Wall clock time and date at job start Tue Mar 31 2020 18:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47149 * 2 1 4 4 N 1.46495 * 109.47207 * 179.97438 * 3 2 1 5 5 C 1.46504 * 120.00038 * 270.00085 * 4 3 2 6 6 C 1.34779 * 120.00094 * 89.99729 * 4 3 2 7 7 O 1.21360 * 119.99675 * 354.35029 * 6 4 3 8 8 C 1.49344 * 120.00162 * 174.34694 * 6 4 3 9 9 O 1.21375 * 120.00187 * 359.87164 * 8 6 4 10 10 N 1.34776 * 120.00108 * 179.87200 * 8 6 4 11 11 C 1.39721 * 120.00110 * 185.11343 * 10 8 6 12 12 C 1.38991 * 120.05056 * 144.57420 * 11 10 8 13 13 C 1.38098 * 120.03585 * 180.02562 * 12 11 10 14 14 C 1.38228 * 120.13568 * 359.72280 * 13 12 11 15 15 C 1.38778 * 120.08782 * 0.55022 * 14 13 12 16 16 O 1.35895 * 120.01670 * 179.71908 * 15 14 13 17 17 C 1.42901 * 117.00012 * 359.72953 * 16 15 14 18 18 C 1.53001 * 109.47428 * 179.97438 * 17 16 15 19 19 C 1.50693 * 109.47514 * 180.02562 * 18 17 16 20 20 H 1.08008 * 119.99678 * 0.02562 * 19 18 17 21 21 C 1.37877 * 120.00348 * 180.02562 * 19 18 17 22 22 N 1.31513 * 119.99974 * 180.02562 * 21 19 18 23 23 Si 1.86796 * 119.99668 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.47116 * 90.00311 * 23 21 19 25 25 H 1.48508 * 109.46944 * 210.00063 * 23 21 19 26 26 H 1.48504 * 109.47416 * 329.99687 * 23 21 19 27 27 C 1.38608 * 119.96508 * 359.45198 * 15 14 13 28 28 H 1.08997 * 109.47592 * 300.00262 * 1 2 3 29 29 H 1.09005 * 109.46937 * 60.00588 * 1 2 3 30 30 H 1.08999 * 109.47307 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47074 * 239.99779 * 2 1 3 32 32 H 1.09005 * 109.46524 * 120.00068 * 2 1 3 33 33 H 1.08997 * 109.47087 * 59.99429 * 3 2 1 34 34 H 1.08999 * 109.46752 * 300.00001 * 3 2 1 35 35 H 1.08996 * 109.46636 * 264.05635 * 5 4 3 36 36 H 1.08997 * 109.46831 * 24.06090 * 5 4 3 37 37 H 1.08999 * 109.46858 * 144.06066 * 5 4 3 38 38 H 0.97003 * 120.00086 * 5.11018 * 10 8 6 39 39 H 1.08008 * 119.98043 * 359.97438 * 12 11 10 40 40 H 1.08006 * 119.93413 * 179.97438 * 13 12 11 41 41 H 1.07999 * 119.95735 * 180.29816 * 14 13 12 42 42 H 1.08998 * 109.47181 * 300.00066 * 17 16 15 43 43 H 1.09006 * 109.47139 * 60.00185 * 17 16 15 44 44 H 1.08998 * 109.47402 * 300.00431 * 18 17 16 45 45 H 1.09006 * 109.46400 * 60.00234 * 18 17 16 46 46 H 0.97003 * 119.99503 * 179.97438 * 22 21 19 47 47 H 1.08008 * 120.06358 * 180.24768 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.2370 1.4426 1.2697 6 6 4.1794 1.4422 -1.1663 7 8 3.5774 1.3386 -2.2150 8 6 5.6674 1.5697 -1.1689 9 8 6.2692 1.6758 -0.1202 10 7 6.3420 1.5668 -2.3356 11 6 7.7391 1.5783 -2.3349 12 6 8.4414 0.8796 -3.3098 13 6 9.8224 0.8907 -3.3084 14 6 10.5097 1.6006 -2.3418 15 6 9.8140 2.2954 -1.3625 16 8 10.4913 2.9881 -0.4095 17 6 11.9184 2.9527 -0.4729 18 6 12.5007 3.7840 0.6720 19 6 14.0057 3.7472 0.6048 20 1 14.4977 3.1872 -0.1767 21 6 14.7545 4.4284 1.5409 22 7 16.0679 4.3967 1.4818 23 14 13.9034 5.3964 2.8929 24 1 13.6872 4.5173 4.0700 25 1 14.7525 6.5497 3.2856 26 1 12.5939 5.8918 2.3978 27 6 8.4280 2.2870 -1.3601 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6767 1.9562 -0.8900 35 1 4.5106 2.4648 1.5310 36 1 3.6056 1.0238 2.0533 37 1 5.1392 0.8395 1.1687 38 1 5.8575 1.5568 -3.1760 39 1 7.9068 0.3271 -4.0684 40 1 10.3665 0.3469 -4.0666 41 1 11.5896 1.6112 -2.3463 42 1 12.2606 1.9216 -0.3842 43 1 12.2502 3.3649 -1.4259 44 1 12.1585 4.8151 0.5829 45 1 12.1690 3.3722 1.6252 46 1 16.5947 4.8762 2.1402 47 1 7.8849 2.8305 -0.6010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057693488.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:23 Heat of formation + Delta-G solvation = -95.982154 kcal Electronic energy + Delta-G solvation = -27767.989595 eV Core-core repulsion = 23722.799673 eV Total energy + Delta-G solvation = -4045.189922 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.35058 -41.10201 -40.02206 -38.54683 -37.50918 -35.81608 -35.33197 -34.16702 -32.94492 -31.30454 -30.45084 -28.50609 -27.89789 -27.10586 -25.33022 -23.85245 -23.33944 -22.63534 -21.86705 -21.02079 -19.81063 -19.03424 -18.65209 -18.11238 -17.47703 -17.08324 -16.99088 -16.88412 -16.81450 -16.45991 -16.11698 -15.79153 -15.47875 -15.17002 -14.81552 -14.58388 -14.52922 -14.31286 -14.25782 -13.91015 -13.69688 -13.40500 -13.31760 -13.01511 -12.87421 -12.79887 -12.64460 -12.56109 -12.33592 -12.23576 -12.13289 -11.79463 -11.72368 -11.64392 -11.46283 -11.29283 -10.82241 -10.55095 -9.94593 -9.52021 -9.09961 -8.35649 -6.42050 -0.13461 0.42814 0.48448 1.09621 1.34998 1.36317 1.49085 1.93025 2.14421 2.32312 2.42854 2.75878 2.99333 3.11360 3.87484 3.94195 3.98575 4.11570 4.15965 4.17682 4.20393 4.22619 4.35949 4.39250 4.49742 4.49864 4.54334 4.63361 4.67274 4.68452 4.88081 4.98463 5.08358 5.10366 5.15342 5.17408 5.19498 5.25171 5.29020 5.35121 5.43044 5.45494 5.51580 5.74817 5.83833 6.04695 6.15524 6.48953 6.51842 6.63372 6.74664 7.23128 8.79849 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016154 B = 0.002140 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.886973 B =13081.822551 C =14587.177672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.136 4.136 3 C 0.108 3.892 4 N -0.580 5.580 5 C 0.071 3.929 6 C 0.510 3.490 7 O -0.536 6.536 8 C 0.501 3.499 9 O -0.509 6.509 10 N -0.632 5.632 11 C 0.168 3.832 12 C -0.168 4.168 13 C -0.053 4.053 14 C -0.228 4.228 15 C 0.127 3.873 16 O -0.336 6.336 17 C 0.086 3.914 18 C -0.007 4.007 19 C -0.536 4.536 20 H 0.045 0.955 21 C 0.015 3.985 22 N -0.940 5.940 23 Si 0.946 3.054 24 H -0.265 1.265 25 H -0.278 1.278 26 H -0.253 1.253 27 C -0.175 4.175 28 H 0.069 0.931 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.047 0.953 32 H 0.071 0.929 33 H 0.111 0.889 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.099 0.901 37 H 0.080 0.920 38 H 0.434 0.566 39 H 0.164 0.836 40 H 0.164 0.836 41 H 0.132 0.868 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.026 0.974 45 H 0.024 0.976 46 H 0.270 0.730 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.286 -9.543 -6.720 34.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C -0.012 4.012 4 N -0.312 5.312 5 C -0.070 4.070 6 C 0.292 3.708 7 O -0.414 6.414 8 C 0.284 3.716 9 O -0.383 6.383 10 N -0.279 5.279 11 C 0.074 3.926 12 C -0.188 4.188 13 C -0.072 4.072 14 C -0.247 4.247 15 C 0.081 3.919 16 O -0.250 6.250 17 C 0.012 3.988 18 C -0.045 4.045 19 C -0.574 4.574 20 H 0.063 0.937 21 C -0.183 4.183 22 N -0.580 5.580 23 Si 0.769 3.231 24 H -0.190 1.190 25 H -0.203 1.203 26 H -0.177 1.177 27 C -0.195 4.195 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.129 0.871 34 H 0.098 0.902 35 H 0.081 0.919 36 H 0.117 0.883 37 H 0.098 0.902 38 H 0.274 0.726 39 H 0.181 0.819 40 H 0.182 0.818 41 H 0.150 0.850 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.044 0.956 45 H 0.043 0.957 46 H 0.079 0.921 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -32.166 -9.348 -6.236 34.072 hybrid contribution 0.466 0.484 0.276 0.726 sum -31.700 -8.864 -5.959 33.451 Atomic orbital electron populations 1.21669 0.93529 1.02565 1.02616 1.21841 0.97481 0.96026 1.02125 1.21943 0.76191 0.98361 1.04750 1.47895 1.08152 1.68999 1.06143 1.22315 0.97629 1.03491 0.83599 1.19777 0.87268 0.78887 0.84905 1.90757 1.69613 1.49519 1.31498 1.20511 0.89164 0.77744 0.84205 1.90803 1.70076 1.46114 1.31331 1.43000 1.04419 1.70473 1.10050 1.17383 0.81858 0.96598 0.96725 1.21135 0.94364 1.02177 1.01149 1.21114 0.93555 0.95711 0.96801 1.21590 1.01225 1.03771 0.98150 1.19145 0.91742 0.92146 0.88871 1.86043 1.21826 1.67838 1.49336 1.22719 0.75427 1.00509 1.00180 1.19452 0.94197 0.96180 0.94658 1.21102 0.90269 1.32096 1.13918 0.93682 1.25839 0.95317 0.97005 1.00145 1.70019 1.06316 1.44109 1.37556 0.85719 0.79321 0.78747 0.79294 1.18990 1.20328 1.17682 1.20350 0.91136 1.04901 1.03162 0.91179 0.92572 0.92028 0.93382 0.91042 0.87113 0.90239 0.91859 0.88273 0.90167 0.72554 0.81871 0.81812 0.85007 0.92104 0.91938 0.95552 0.95728 0.92089 0.85479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 71.98 0.71 -0.35 16 2 C -0.14 -1.43 6.26 30.59 0.19 -1.23 16 3 C 0.11 1.22 5.34 86.38 0.46 1.68 16 4 N -0.58 -9.26 2.87 -848.50 -2.44 -11.69 16 5 C 0.07 1.01 9.27 127.77 1.18 2.20 16 6 C 0.51 10.42 7.72 87.24 0.67 11.09 16 7 O -0.54 -12.28 16.12 -3.28 -0.05 -12.33 16 8 C 0.50 11.45 7.61 87.24 0.66 12.12 16 9 O -0.51 -13.99 10.71 -3.32 -0.04 -14.02 16 10 N -0.63 -12.86 5.32 -304.89 -1.62 -14.48 16 11 C 0.17 4.10 6.29 38.20 0.24 4.34 16 12 C -0.17 -3.27 9.96 22.42 0.22 -3.04 16 13 C -0.05 -1.13 10.03 22.23 0.22 -0.91 16 14 C -0.23 -6.58 9.04 22.40 0.20 -6.37 16 15 C 0.13 4.38 6.68 22.49 0.15 4.54 16 16 O -0.34 -13.68 10.13 -92.37 -0.94 -14.61 16 17 C 0.09 3.61 4.68 71.98 0.34 3.94 16 18 C -0.01 -0.36 4.41 29.85 0.13 -0.23 16 19 C -0.54 -30.89 9.66 25.60 0.25 -30.64 16 20 H 0.04 2.78 7.99 -2.91 -0.02 2.76 16 21 C 0.02 0.89 5.47 84.65 0.46 1.36 16 22 N -0.94 -58.16 13.96 21.45 0.30 -57.86 16 23 Si 0.95 44.67 27.47 68.60 1.88 46.56 16 24 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 25 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 26 H -0.25 -11.45 6.54 99.48 0.65 -10.80 16 27 C -0.17 -5.52 8.63 22.50 0.19 -5.32 16 28 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.06 0.44 8.14 -2.38 -0.02 0.42 16 30 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 33 H 0.11 0.69 8.07 -2.39 -0.02 0.67 16 34 H 0.08 1.05 7.51 -2.39 -0.02 1.03 16 35 H 0.06 0.96 8.13 -2.39 -0.02 0.94 16 36 H 0.10 0.81 8.03 -2.39 -0.02 0.79 16 37 H 0.08 1.49 5.84 -2.39 -0.01 1.47 16 38 H 0.43 6.61 8.30 -92.71 -0.77 5.84 16 39 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 40 H 0.16 2.31 8.06 -2.91 -0.02 2.29 16 41 H 0.13 3.80 6.29 -2.91 -0.02 3.78 16 42 H 0.06 2.46 7.67 -2.39 -0.02 2.44 16 43 H 0.06 2.51 7.65 -2.38 -0.02 2.49 16 44 H 0.03 1.29 7.20 -2.39 -0.02 1.27 16 45 H 0.02 1.19 7.57 -2.38 -0.02 1.17 16 46 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 47 H 0.13 4.39 6.23 -2.91 -0.02 4.37 16 Total: -1.00 -72.46 389.90 3.56 -68.90 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: 0.16 Total: 16.39 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: 6.30 Total: -6.84 kcal Atomic # 7 Polarization: -80.28 SS G_CDS: -3.76 Total: -84.04 kcal Atomic # 8 Polarization: -39.94 SS G_CDS: -1.02 Total: -40.97 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.88 Total: 46.56 kcal Total: -72.46 3.56 -68.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057693488.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.078 kcal (2) G-P(sol) polarization free energy of solvation -72.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds