Wall clock time and date at job start Tue Mar 31 2020 18:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46504 * 109.46883 * 180.02562 * 3 2 1 5 5 C 1.46499 * 119.99661 * 269.99401 * 4 3 2 6 6 C 1.39007 * 119.99879 * 89.99973 * 4 3 2 7 7 C 1.39236 * 119.92809 * 359.72255 * 6 4 3 8 8 C 1.37110 * 120.07311 * 179.76599 * 7 6 4 9 9 C 1.39865 * 119.92350 * 0.50627 * 8 7 6 10 10 C 1.47376 * 120.07300 * 179.72079 * 9 8 7 11 11 O 1.21516 * 120.00176 * 180.02562 * 10 9 8 12 12 O 1.34765 * 120.00093 * 0.02562 * 10 9 8 13 13 C 1.45196 * 117.00301 * 179.97438 * 12 10 9 14 14 C 1.50699 * 109.47570 * 180.02562 * 13 12 10 15 15 O 1.21278 * 119.99806 * 0.02562 * 14 13 12 16 16 N 1.34772 * 120.00322 * 180.02562 * 14 13 12 17 17 C 1.46498 * 120.00004 * 179.97438 * 16 14 13 18 18 C 1.50700 * 109.46977 * 179.97438 * 17 16 14 19 19 H 1.08006 * 120.00128 * 0.02562 * 18 17 16 20 20 C 1.37883 * 120.00091 * 180.02562 * 18 17 16 21 21 N 1.31514 * 119.99805 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00127 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47352 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47641 * 119.99840 * 22 20 18 25 25 H 1.48505 * 109.46953 * 239.99891 * 22 20 18 26 26 C 1.39851 * 119.85104 * 359.74542 * 9 8 7 27 27 C 1.37105 * 119.92835 * 359.97438 * 26 9 8 28 28 H 1.08996 * 109.46952 * 300.00302 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47502 * 240.00157 * 2 1 3 32 32 H 1.09001 * 109.47289 * 119.99953 * 2 1 3 33 33 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 34 34 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 35 35 H 1.09003 * 109.47033 * 90.00622 * 5 4 3 36 36 H 1.09000 * 109.47241 * 210.00440 * 5 4 3 37 37 H 1.09000 * 109.47127 * 330.00198 * 5 4 3 38 38 H 1.07996 * 119.95967 * 359.97438 * 7 6 4 39 39 H 1.07997 * 120.03961 * 180.22938 * 8 7 6 40 40 H 1.09001 * 109.47335 * 300.00103 * 13 12 10 41 41 H 1.09005 * 109.47117 * 59.99968 * 13 12 10 42 42 H 0.97000 * 119.99982 * 359.97438 * 16 14 13 43 43 H 1.08989 * 109.47157 * 299.99802 * 17 16 14 44 44 H 1.08998 * 109.47092 * 60.00244 * 17 16 14 45 45 H 0.97003 * 120.00039 * 180.02562 * 21 20 18 46 46 H 1.08005 * 120.03417 * 179.97438 * 26 9 8 47 47 H 1.08003 * 119.96537 * 179.97438 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2380 1.4424 1.2678 6 6 4.1995 1.4426 -1.2048 7 6 3.5013 1.4370 -2.4094 8 6 4.1833 1.4420 -3.5988 9 6 5.5820 1.4420 -3.6012 10 6 6.3183 1.4411 -4.8778 11 8 7.5335 1.4407 -4.8783 12 8 5.6441 1.4408 -6.0446 13 6 6.4344 1.4405 -7.2627 14 6 5.5159 1.4408 -8.4575 15 8 4.3137 1.4417 -8.2981 16 7 6.0306 1.4401 -9.7030 17 6 5.1377 1.4398 -10.8645 18 6 5.9580 1.4396 -12.1287 19 1 7.0366 1.4393 -12.0726 20 6 5.3316 1.4399 -13.3570 21 7 4.0182 1.4398 -13.4253 22 14 6.3483 1.4390 -14.9240 23 1 7.7923 1.4386 -14.5772 24 1 6.0298 0.2266 -15.7201 25 1 6.0313 2.6516 -15.7204 26 6 6.2801 1.4424 -2.3894 27 6 5.5920 1.4432 -1.2035 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 4.4198 0.4147 1.5823 36 1 5.1903 1.9563 1.1372 37 1 3.6492 1.9562 2.0277 38 1 2.4214 1.4321 -2.4068 39 1 3.6412 1.4413 -4.5329 40 1 7.0632 2.3305 -7.2880 41 1 7.0632 0.5505 -7.2876 42 1 6.9921 1.4398 -9.8305 43 1 4.5087 0.5501 -10.8390 44 1 4.5092 2.3300 -10.8398 45 1 3.5775 1.4396 -14.2894 46 1 7.3601 1.4420 -2.3877 47 1 6.1305 1.4431 -0.2673 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058390423.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:52 Heat of formation + Delta-G solvation = -96.047719 kcal Electronic energy + Delta-G solvation = -27152.873775 eV Core-core repulsion = 23107.681010 eV Total energy + Delta-G solvation = -4045.192765 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.62956 -39.77439 -38.61683 -37.06833 -36.09232 -34.20859 -33.92668 -32.38365 -31.40951 -30.69812 -28.99758 -28.00353 -26.74451 -25.65301 -23.25316 -22.52335 -22.42332 -21.69319 -20.40743 -19.88176 -18.39341 -17.50187 -17.39179 -16.45108 -16.43362 -16.16538 -15.49135 -15.35791 -15.24187 -15.08223 -14.65701 -14.52696 -14.25488 -14.17507 -13.83138 -13.51375 -13.22009 -13.12035 -12.74563 -12.70459 -12.61463 -12.41386 -12.22170 -12.14574 -11.97208 -11.82701 -11.71536 -11.23521 -10.99068 -10.96968 -10.92457 -10.57992 -10.49202 -10.32800 -10.20354 -9.40146 -9.27130 -9.12531 -8.76601 -7.95332 -7.72804 -6.18076 -4.25136 0.74756 1.24942 2.55717 2.57955 2.61873 3.23164 3.24062 3.30995 3.34210 3.71102 4.06887 4.31448 4.35643 4.40766 4.52373 4.66291 4.70800 4.82794 4.85122 4.92126 4.98372 5.09140 5.16240 5.18241 5.20850 5.21327 5.29809 5.32683 5.33003 5.35790 5.40741 5.56461 5.63768 5.78197 5.83914 5.92279 6.03922 6.26929 6.45875 6.49699 6.77731 7.03252 7.25763 7.35040 7.48497 7.62973 7.85532 7.94050 8.53875 8.74081 9.00419 9.41248 10.92134 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020442 B = 0.001771 C = 0.001643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.375142 B =15804.742528 C =17040.115865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.145 4.145 3 C 0.118 3.882 4 N -0.624 5.624 5 C 0.088 3.912 6 C 0.250 3.750 7 C -0.213 4.213 8 C -0.006 4.006 9 C -0.189 4.189 10 C 0.513 3.487 11 O -0.521 6.521 12 O -0.327 6.327 13 C 0.050 3.950 14 C 0.500 3.500 15 O -0.535 6.535 16 N -0.707 5.707 17 C 0.251 3.749 18 C -0.544 4.544 19 H 0.065 0.935 20 C 0.063 3.937 21 N -0.885 5.885 22 Si 0.905 3.095 23 H -0.271 1.271 24 H -0.282 1.282 25 H -0.282 1.282 26 C -0.002 4.002 27 C -0.216 4.216 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.051 0.949 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.131 0.869 39 H 0.143 0.857 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.393 0.607 43 H 0.029 0.971 44 H 0.029 0.971 45 H 0.266 0.734 46 H 0.136 0.864 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.088 -0.484 32.117 32.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.184 4.184 3 C -0.005 4.005 4 N -0.332 5.332 5 C -0.055 4.055 6 C 0.145 3.855 7 C -0.236 4.236 8 C -0.025 4.025 9 C -0.192 4.192 10 C 0.359 3.641 11 O -0.411 6.411 12 O -0.242 6.242 13 C -0.027 4.027 14 C 0.283 3.717 15 O -0.412 6.412 16 N -0.357 5.357 17 C 0.131 3.869 18 C -0.583 4.583 19 H 0.083 0.917 20 C -0.140 4.140 21 N -0.522 5.522 22 Si 0.732 3.268 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.021 4.021 27 C -0.238 4.238 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.069 0.931 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.148 0.852 39 H 0.161 0.839 40 H 0.114 0.886 41 H 0.114 0.886 42 H 0.226 0.774 43 H 0.047 0.953 44 H 0.047 0.953 45 H 0.075 0.925 46 H 0.153 0.847 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.884 -0.472 32.231 32.289 hybrid contribution 1.094 -0.053 -1.012 1.491 sum -0.790 -0.525 31.219 31.233 Atomic orbital electron populations 1.21711 0.94984 1.02226 1.02010 1.21982 0.96230 0.97283 1.02883 1.21639 0.78775 0.96963 1.03166 1.46493 1.05176 1.78157 1.03331 1.21728 0.97422 1.01510 0.84809 1.18113 0.91320 0.90141 0.85881 1.20568 1.00162 1.12211 0.90611 1.21243 0.92792 0.89742 0.98683 1.18810 0.93559 1.16796 0.90019 1.21155 0.86024 0.72466 0.84453 1.90811 1.14769 1.47334 1.88223 1.86602 1.40051 1.83836 1.13742 1.22830 0.93532 1.04540 0.81845 1.19904 0.88949 0.78647 0.84170 1.90696 1.15074 1.49603 1.85867 1.46356 1.11217 1.72521 1.05649 1.19170 0.89457 0.98012 0.80302 1.21261 0.93316 1.53286 0.90390 0.91697 1.24958 0.95054 0.94645 0.99383 1.69985 1.07836 1.48853 1.25543 0.86335 0.80120 0.77749 0.82547 1.19600 1.20784 1.20788 1.20837 1.00282 0.90968 0.90039 1.20454 0.91859 1.12989 0.98531 0.92687 0.92294 0.92311 0.91277 0.91873 0.90111 0.90590 0.93055 0.90942 0.91326 0.85165 0.83935 0.88567 0.88561 0.77427 0.95262 0.95264 0.92453 0.84658 0.85215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.91 37.16 0.37 -0.32 16 2 C -0.14 -0.78 6.26 -26.73 -0.17 -0.94 16 3 C 0.12 0.62 5.18 -4.04 -0.02 0.60 16 4 N -0.62 -4.13 2.99 -179.62 -0.54 -4.67 16 5 C 0.09 0.38 10.22 59.85 0.61 1.00 16 6 C 0.25 2.23 6.55 -83.86 -0.55 1.68 16 7 C -0.21 -2.08 9.16 -39.62 -0.36 -2.44 16 8 C -0.01 -0.07 9.58 -39.38 -0.38 -0.44 16 9 C -0.19 -2.45 5.88 -104.97 -0.62 -3.06 16 10 C 0.51 7.94 7.89 34.45 0.27 8.21 16 11 O -0.52 -8.74 16.13 -19.28 -0.31 -9.05 16 12 O -0.33 -5.55 8.99 -47.35 -0.43 -5.97 16 13 C 0.05 0.81 5.95 36.01 0.21 1.02 16 14 C 0.50 10.27 7.91 -10.99 -0.09 10.19 16 15 O -0.53 -13.22 16.50 -14.10 -0.23 -13.46 16 16 N -0.71 -14.90 5.55 -61.48 -0.34 -15.25 16 17 C 0.25 6.63 5.43 -5.19 -0.03 6.60 16 18 C -0.54 -14.72 9.28 -34.44 -0.32 -15.04 16 19 H 0.06 1.64 7.60 -52.48 -0.40 1.24 16 20 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 21 N -0.88 -25.98 13.29 55.43 0.74 -25.25 16 22 Si 0.91 20.83 29.54 -169.99 -5.02 15.81 16 23 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 C 0.00 -0.02 9.56 -39.39 -0.38 -0.40 16 27 C -0.22 -1.93 9.16 -39.62 -0.36 -2.29 16 28 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 0.44 6.18 -51.93 -0.32 0.12 16 34 H 0.08 0.30 7.89 -51.93 -0.41 -0.11 16 35 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 36 H 0.07 0.29 6.17 -51.93 -0.32 -0.03 16 37 H 0.07 0.20 7.89 -51.93 -0.41 -0.21 16 38 H 0.13 1.06 6.12 -52.49 -0.32 0.74 16 39 H 0.14 1.76 7.60 -52.49 -0.40 1.37 16 40 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 41 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.39 6.99 8.32 -40.82 -0.34 6.65 16 43 H 0.03 0.85 8.14 -51.94 -0.42 0.43 16 44 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 46 H 0.14 1.39 7.64 -52.48 -0.40 0.99 16 47 H 0.13 0.86 6.11 -52.48 -0.32 0.54 16 LS Contribution 398.92 15.07 6.01 6.01 Total: -1.00 -34.32 398.92 -9.02 -43.35 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -7.00 Total: 2.47 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: -1.90 Total: 6.00 kcal Atomic # 7 Polarization: -45.02 SS G_CDS: -0.14 Total: -45.16 kcal Atomic # 8 Polarization: -27.51 SS G_CDS: -0.97 Total: -28.48 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.32 -9.02 -43.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058390423.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.700 kcal (2) G-P(sol) polarization free energy of solvation -34.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds