Wall clock time and date at job start Tue Mar 31 2020 18:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46504 * 109.46883 * 180.02562 * 3 2 1 5 5 C 1.46499 * 119.99661 * 269.99401 * 4 3 2 6 6 C 1.39007 * 119.99879 * 89.99973 * 4 3 2 7 7 C 1.39236 * 119.92809 * 359.72255 * 6 4 3 8 8 C 1.37110 * 120.07311 * 179.76599 * 7 6 4 9 9 C 1.39865 * 119.92350 * 0.50627 * 8 7 6 10 10 C 1.47376 * 120.07300 * 179.72079 * 9 8 7 11 11 O 1.21516 * 120.00176 * 180.02562 * 10 9 8 12 12 O 1.34765 * 120.00093 * 0.02562 * 10 9 8 13 13 C 1.45196 * 117.00301 * 179.97438 * 12 10 9 14 14 C 1.50699 * 109.47570 * 180.02562 * 13 12 10 15 15 O 1.21278 * 119.99806 * 0.02562 * 14 13 12 16 16 N 1.34772 * 120.00322 * 180.02562 * 14 13 12 17 17 C 1.46498 * 120.00004 * 179.97438 * 16 14 13 18 18 C 1.50700 * 109.46977 * 179.97438 * 17 16 14 19 19 H 1.08006 * 120.00128 * 0.02562 * 18 17 16 20 20 C 1.37883 * 120.00091 * 180.02562 * 18 17 16 21 21 N 1.31514 * 119.99805 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00127 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47352 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47641 * 119.99840 * 22 20 18 25 25 H 1.48505 * 109.46953 * 239.99891 * 22 20 18 26 26 C 1.39851 * 119.85104 * 359.74542 * 9 8 7 27 27 C 1.37105 * 119.92835 * 359.97438 * 26 9 8 28 28 H 1.08996 * 109.46952 * 300.00302 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47502 * 240.00157 * 2 1 3 32 32 H 1.09001 * 109.47289 * 119.99953 * 2 1 3 33 33 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 34 34 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 35 35 H 1.09003 * 109.47033 * 90.00622 * 5 4 3 36 36 H 1.09000 * 109.47241 * 210.00440 * 5 4 3 37 37 H 1.09000 * 109.47127 * 330.00198 * 5 4 3 38 38 H 1.07996 * 119.95967 * 359.97438 * 7 6 4 39 39 H 1.07997 * 120.03961 * 180.22938 * 8 7 6 40 40 H 1.09001 * 109.47335 * 300.00103 * 13 12 10 41 41 H 1.09005 * 109.47117 * 59.99968 * 13 12 10 42 42 H 0.97000 * 119.99982 * 359.97438 * 16 14 13 43 43 H 1.08989 * 109.47157 * 299.99802 * 17 16 14 44 44 H 1.08998 * 109.47092 * 60.00244 * 17 16 14 45 45 H 0.97003 * 120.00039 * 180.02562 * 21 20 18 46 46 H 1.08005 * 120.03417 * 179.97438 * 26 9 8 47 47 H 1.08003 * 119.96537 * 179.97438 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2380 1.4424 1.2678 6 6 4.1995 1.4426 -1.2048 7 6 3.5013 1.4370 -2.4094 8 6 4.1833 1.4420 -3.5988 9 6 5.5820 1.4420 -3.6012 10 6 6.3183 1.4411 -4.8778 11 8 7.5335 1.4407 -4.8783 12 8 5.6441 1.4408 -6.0446 13 6 6.4344 1.4405 -7.2627 14 6 5.5159 1.4408 -8.4575 15 8 4.3137 1.4417 -8.2981 16 7 6.0306 1.4401 -9.7030 17 6 5.1377 1.4398 -10.8645 18 6 5.9580 1.4396 -12.1287 19 1 7.0366 1.4393 -12.0726 20 6 5.3316 1.4399 -13.3570 21 7 4.0182 1.4398 -13.4253 22 14 6.3483 1.4390 -14.9240 23 1 7.7923 1.4386 -14.5772 24 1 6.0298 0.2266 -15.7201 25 1 6.0313 2.6516 -15.7204 26 6 6.2801 1.4424 -2.3894 27 6 5.5920 1.4432 -1.2035 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 4.4198 0.4147 1.5823 36 1 5.1903 1.9563 1.1372 37 1 3.6492 1.9562 2.0277 38 1 2.4214 1.4321 -2.4068 39 1 3.6412 1.4413 -4.5329 40 1 7.0632 2.3305 -7.2880 41 1 7.0632 0.5505 -7.2876 42 1 6.9921 1.4398 -9.8305 43 1 4.5087 0.5501 -10.8390 44 1 4.5092 2.3300 -10.8398 45 1 3.5775 1.4396 -14.2894 46 1 7.3601 1.4420 -2.3877 47 1 6.1305 1.4431 -0.2673 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058390423.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:52 Heat of formation + Delta-G solvation = -116.539445 kcal Electronic energy + Delta-G solvation = -27153.762363 eV Core-core repulsion = 23107.681010 eV Total energy + Delta-G solvation = -4046.081353 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.74358 -40.74197 -40.18575 -37.83751 -37.28502 -36.17987 -34.43829 -34.40363 -32.17106 -31.59213 -30.51854 -28.51196 -28.42688 -26.43483 -24.71043 -23.75454 -23.23178 -22.39597 -21.64569 -21.24724 -19.49043 -18.96234 -18.43646 -17.83784 -17.75412 -17.14432 -17.00731 -16.73056 -16.16661 -16.05605 -15.94089 -15.69077 -15.27144 -14.90130 -14.72577 -14.55192 -14.53373 -14.16248 -13.96463 -13.84525 -13.73070 -13.41852 -13.31126 -13.08129 -12.91284 -12.80811 -12.75465 -12.65394 -12.24140 -12.22470 -11.88048 -11.80775 -11.67982 -11.54598 -11.46929 -10.90768 -10.89100 -10.83124 -10.07246 -9.93166 -8.37792 -8.29798 -6.46312 -0.16523 0.46463 1.30133 1.45000 1.45153 1.51788 1.57277 1.59137 2.07278 2.34852 2.60603 2.85635 3.05451 3.66288 3.73272 3.82019 3.87401 4.01422 4.06640 4.06847 4.08796 4.24781 4.34761 4.39981 4.45125 4.58494 4.63869 4.68500 4.73347 4.90376 4.93835 5.04982 5.06222 5.12739 5.16024 5.19967 5.21808 5.24007 5.36789 5.41963 5.43574 5.45644 5.63309 5.68943 5.81920 6.22646 6.38037 6.62058 6.65331 6.79371 7.20173 7.35386 8.82606 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020442 B = 0.001771 C = 0.001643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.375142 B =15804.742528 C =17040.115865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.139 4.139 3 C 0.113 3.887 4 N -0.618 5.618 5 C 0.080 3.920 6 C 0.256 3.744 7 C -0.217 4.217 8 C -0.015 4.015 9 C -0.218 4.218 10 C 0.513 3.487 11 O -0.539 6.539 12 O -0.346 6.346 13 C 0.061 3.939 14 C 0.501 3.499 15 O -0.582 6.582 16 N -0.698 5.698 17 C 0.266 3.734 18 C -0.557 4.557 19 H 0.086 0.914 20 C 0.004 3.996 21 N -0.930 5.930 22 Si 0.986 3.014 23 H -0.253 1.253 24 H -0.279 1.279 25 H -0.279 1.279 26 C -0.002 4.002 27 C -0.212 4.212 28 H 0.066 0.934 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.049 0.951 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.098 0.902 35 H 0.058 0.942 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.143 0.857 39 H 0.126 0.874 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.412 0.588 43 H -0.007 1.007 44 H -0.007 1.007 45 H 0.269 0.731 46 H 0.140 0.860 47 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.509 -0.314 34.232 34.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.178 4.178 3 C -0.010 4.010 4 N -0.324 5.324 5 C -0.062 4.062 6 C 0.149 3.851 7 C -0.240 4.240 8 C -0.034 4.034 9 C -0.222 4.222 10 C 0.362 3.638 11 O -0.431 6.431 12 O -0.262 6.262 13 C -0.016 4.016 14 C 0.287 3.713 15 O -0.463 6.463 16 N -0.350 5.350 17 C 0.144 3.856 18 C -0.595 4.595 19 H 0.104 0.896 20 C -0.196 4.196 21 N -0.568 5.568 22 Si 0.809 3.191 23 H -0.177 1.177 24 H -0.205 1.205 25 H -0.205 1.205 26 C -0.021 4.021 27 C -0.234 4.234 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.116 0.884 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.107 0.893 38 H 0.161 0.839 39 H 0.144 0.856 40 H 0.140 0.860 41 H 0.140 0.860 42 H 0.249 0.751 43 H 0.011 0.989 44 H 0.011 0.989 45 H 0.078 0.922 46 H 0.158 0.842 47 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.256 -0.304 34.408 34.410 hybrid contribution 0.463 -0.114 -1.444 1.521 sum 0.207 -0.418 32.964 32.968 Atomic orbital electron populations 1.21699 0.94388 1.02226 1.02482 1.21909 0.96712 0.97114 1.02072 1.21793 0.78005 0.97056 1.04131 1.46779 1.05910 1.76317 1.03361 1.21969 0.97928 1.02392 0.83941 1.18237 0.91614 0.88754 0.86497 1.20676 1.00825 1.12066 0.90386 1.21151 0.92597 0.90720 0.98950 1.18833 0.93910 1.19928 0.89518 1.21579 0.86010 0.71795 0.84457 1.90780 1.15318 1.48730 1.88305 1.86603 1.40938 1.84283 1.14389 1.22722 0.92088 1.06993 0.79834 1.20649 0.88912 0.76750 0.85024 1.90673 1.17558 1.51456 1.86604 1.46036 1.11618 1.72555 1.04792 1.18639 0.89689 0.94616 0.82677 1.21652 0.94342 1.52969 0.90504 0.89593 1.26064 0.96206 0.93829 1.03489 1.70141 1.10077 1.49895 1.26729 0.85086 0.78999 0.77656 0.77312 1.17670 1.20467 1.20466 1.20941 1.00560 0.90746 0.89880 1.20710 0.91931 1.11867 0.98890 0.91454 0.92584 0.92592 0.93182 0.91542 0.90440 0.88374 0.92347 0.90246 0.89347 0.83948 0.85556 0.85968 0.85976 0.75132 0.98931 0.98928 0.92195 0.84241 0.82436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.91 71.98 0.71 -0.45 16 2 C -0.14 -1.27 6.26 30.60 0.19 -1.08 16 3 C 0.11 0.93 5.18 86.38 0.45 1.38 16 4 N -0.62 -6.57 2.99 -722.19 -2.16 -8.73 16 5 C 0.08 0.42 10.22 127.77 1.31 1.72 16 6 C 0.26 4.13 6.55 38.49 0.25 4.38 16 7 C -0.22 -4.17 9.16 22.24 0.20 -3.97 16 8 C -0.01 -0.37 9.58 22.40 0.21 -0.15 16 9 C -0.22 -5.77 5.88 -20.09 -0.12 -5.88 16 10 C 0.51 16.13 7.89 70.23 0.55 16.68 16 11 O -0.54 -17.95 16.13 19.78 0.32 -17.64 16 12 O -0.35 -12.02 8.99 -50.37 -0.45 -12.48 16 13 C 0.06 1.93 5.95 71.24 0.42 2.35 16 14 C 0.50 21.07 7.91 87.66 0.69 21.76 16 15 O -0.58 -30.25 16.50 15.77 0.26 -29.99 16 16 N -0.70 -29.88 5.55 -466.82 -2.59 -32.47 16 17 C 0.27 14.65 5.43 85.63 0.46 15.12 16 18 C -0.56 -30.28 9.28 25.60 0.24 -30.04 16 19 H 0.09 4.21 7.60 -2.91 -0.02 4.19 16 20 C 0.00 0.21 5.46 84.66 0.46 0.67 16 21 N -0.93 -56.06 13.29 21.45 0.28 -55.78 16 22 Si 0.99 42.40 29.54 68.60 2.03 44.43 16 23 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 24 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 25 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 26 C 0.00 -0.04 9.56 22.39 0.21 0.17 16 27 C -0.21 -3.36 9.16 22.24 0.20 -3.16 16 28 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.05 0.65 8.14 -2.39 -0.02 0.64 16 32 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.08 0.72 6.18 -2.39 -0.01 0.71 16 34 H 0.10 0.43 7.89 -2.39 -0.02 0.41 16 35 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 36 H 0.08 0.34 6.17 -2.39 -0.01 0.32 16 37 H 0.09 0.16 7.89 -2.39 -0.02 0.14 16 38 H 0.14 2.27 6.12 -2.91 -0.02 2.25 16 39 H 0.13 3.43 7.60 -2.91 -0.02 3.40 16 40 H 0.12 3.29 8.14 -2.39 -0.02 3.27 16 41 H 0.12 3.29 8.14 -2.38 -0.02 3.27 16 42 H 0.41 14.31 8.32 -92.71 -0.77 13.54 16 43 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 44 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 45 H 0.27 15.10 8.31 -92.71 -0.77 14.32 16 46 H 0.14 2.74 7.64 -2.91 -0.02 2.72 16 47 H 0.16 1.56 6.11 -2.91 -0.02 1.54 16 Total: -1.00 -77.20 398.92 4.37 -72.83 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: 0.22 Total: 20.30 kcal Atomic # 6 Polarization: 13.06 SS G_CDS: 6.46 Total: 19.52 kcal Atomic # 7 Polarization: -92.51 SS G_CDS: -4.46 Total: -96.98 kcal Atomic # 8 Polarization: -60.23 SS G_CDS: 0.13 Total: -60.11 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -77.20 4.37 -72.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058390423.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.705 kcal (2) G-P(sol) polarization free energy of solvation -77.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds