Wall clock time and date at job start Tue Mar 31 2020 18:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47365 * 2 1 4 4 N 1.46495 * 109.47315 * 180.02562 * 3 2 1 5 5 C 1.36941 * 119.99751 * 266.49603 * 4 3 2 6 6 H 1.07995 * 120.00004 * 323.23084 * 5 4 3 7 7 C 1.38815 * 120.00026 * 143.24121 * 5 4 3 8 8 N 1.31610 * 120.00104 * 155.40255 * 7 5 4 9 9 Si 1.86802 * 119.99573 * 335.40327 * 7 5 4 10 10 H 1.48498 * 109.47075 * 94.89009 * 9 7 5 11 11 H 1.48501 * 109.46830 * 214.88439 * 9 7 5 12 12 H 1.48500 * 109.47382 * 334.88800 * 9 7 5 13 13 C 1.46498 * 120.00254 * 86.49166 * 4 3 2 14 14 C 1.50705 * 109.47063 * 89.99713 * 13 4 3 15 15 O 1.21288 * 119.99870 * 0.02562 * 14 13 4 16 16 N 1.34773 * 119.99840 * 180.02562 * 14 13 4 17 17 C 1.39960 * 119.99780 * 185.06041 * 16 14 13 18 18 C 1.38623 * 119.99717 * 331.07589 * 17 16 14 19 19 C 1.39507 * 119.77317 * 179.97438 * 18 17 16 20 20 C 1.47752 * 120.11356 * 180.02562 * 19 18 17 21 21 O 1.21463 * 120.00036 * 0.02562 * 20 19 18 22 22 O 1.34706 * 119.99589 * 180.02562 * 20 19 18 23 23 C 1.45200 * 116.99872 * 180.02562 * 22 20 19 24 24 C 1.39665 * 119.77049 * 0.02562 * 19 18 17 25 25 C 1.37965 * 119.99100 * 359.97438 * 24 19 18 26 26 C 1.38272 * 120.22226 * 359.72743 * 25 24 19 27 27 C 1.50697 * 119.87957 * 180.27495 * 26 25 24 28 28 H 1.08998 * 109.47296 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47345 * 299.99816 * 1 2 3 30 30 H 1.09001 * 109.47544 * 59.99685 * 1 2 3 31 31 H 1.08998 * 109.46827 * 239.99931 * 2 1 3 32 32 H 1.09003 * 109.46819 * 120.00188 * 2 1 3 33 33 H 1.09007 * 109.46738 * 59.99813 * 3 2 1 34 34 H 1.09001 * 109.47047 * 300.00620 * 3 2 1 35 35 H 0.97001 * 120.00269 * 180.02562 * 8 7 5 36 36 H 1.08995 * 109.47475 * 210.00077 * 13 4 3 37 37 H 1.09003 * 109.47035 * 330.00177 * 13 4 3 38 38 H 0.96995 * 120.00260 * 5.06092 * 16 14 13 39 39 H 1.08002 * 120.11031 * 359.97438 * 18 17 16 40 40 H 1.08996 * 109.47081 * 300.00294 * 23 22 20 41 41 H 1.08996 * 109.47202 * 59.99814 * 23 22 20 42 42 H 1.09005 * 109.47262 * 179.97438 * 23 22 20 43 43 H 1.07999 * 120.00767 * 180.02562 * 24 19 18 44 44 H 1.07992 * 119.88921 * 180.02562 * 25 24 19 45 45 H 1.09004 * 109.47430 * 270.27739 * 27 26 25 46 46 H 1.09003 * 109.47485 * 30.27592 * 27 26 25 47 47 H 1.08998 * 109.47448 * 150.27832 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1901 1.5147 1.1829 6 1 3.8116 2.1249 1.9895 7 6 5.3713 0.8039 1.3456 8 7 6.2667 1.2072 2.2218 9 14 5.6899 -0.7251 0.3208 10 1 6.4869 -0.3603 -0.8780 11 1 6.4412 -1.7167 1.1316 12 1 4.3951 -1.3137 -0.1059 13 6 4.2370 1.3650 -1.2672 14 6 4.4879 2.7566 -1.7883 15 8 4.0944 3.7185 -1.1629 16 7 5.1495 2.9323 -2.9493 17 6 5.4756 4.2234 -3.3804 18 6 4.6770 5.2972 -3.0188 19 6 5.0067 6.5821 -3.4506 20 6 4.1611 7.7321 -3.0692 21 8 3.1772 7.5597 -2.3781 22 8 4.4813 8.9717 -3.4880 23 6 3.6059 10.0538 -3.0746 24 6 6.1388 6.7776 -4.2448 25 6 6.9269 5.7020 -4.5990 26 6 6.6033 4.4294 -4.1656 27 6 7.4730 3.2610 -4.5520 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9563 -0.8899 35 1 7.0923 0.7107 2.3353 36 1 5.1894 0.8601 -1.1062 37 1 3.6476 0.8057 -1.9939 38 1 5.3997 2.1642 -3.4860 39 1 3.8026 5.1395 -2.4048 40 1 2.5988 9.8694 -3.4485 41 1 3.5849 10.1086 -1.9862 42 1 3.9770 10.9959 -3.4784 43 1 6.3979 7.7707 -4.5809 44 1 7.8021 5.8551 -5.2127 45 1 7.1180 2.8390 -5.4923 46 1 8.5027 3.5980 -4.6708 47 1 7.4273 2.5006 -3.7724 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058909540.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:46 Heat of formation + Delta-G solvation = -66.081887 kcal Electronic energy + Delta-G solvation = -29187.142132 eV Core-core repulsion = 25143.248783 eV Total energy + Delta-G solvation = -4043.893349 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.72472 -39.95048 -38.28996 -36.41213 -36.11457 -34.50977 -32.93501 -32.68219 -31.36531 -29.99602 -28.59106 -27.48871 -26.64788 -25.77215 -23.26621 -22.77841 -22.12236 -20.79604 -20.45596 -19.75509 -18.28124 -17.42117 -16.93624 -16.48815 -16.34533 -15.97817 -15.60289 -15.23542 -14.86463 -14.54742 -14.34222 -14.06053 -13.79644 -13.66741 -13.46949 -13.34508 -13.29605 -12.77553 -12.62707 -12.56191 -12.45715 -12.18205 -12.03297 -11.74573 -11.67656 -11.43693 -11.26236 -10.86451 -10.85565 -10.77208 -10.60491 -10.51718 -10.33580 -10.11280 -9.89935 -9.64183 -9.20253 -8.80777 -8.55818 -7.93700 -6.96599 -6.05739 -3.44418 0.70603 1.40978 2.52912 2.62440 3.13611 3.18742 3.36909 3.41289 3.42586 3.85717 4.41560 4.64411 4.73481 4.85875 4.92065 4.99276 5.07795 5.09148 5.19743 5.27054 5.36222 5.37745 5.46296 5.49284 5.58918 5.65313 5.71868 5.83408 5.88396 5.94675 5.99397 6.06005 6.14747 6.15463 6.33900 6.36087 6.37067 6.46780 6.49834 6.52634 6.56471 6.85263 7.04224 7.09478 7.68661 7.78126 7.96635 8.36103 8.69184 8.91271 9.62284 9.99795 11.09843 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011339 B = 0.003615 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.709294 B = 7743.698382 C = 8888.769961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.146 4.146 3 C 0.154 3.846 4 N -0.576 5.576 5 C -0.261 4.261 6 H 0.081 0.919 7 C 0.035 3.965 8 N -0.889 5.889 9 Si 0.863 3.137 10 H -0.286 1.286 11 H -0.297 1.297 12 H -0.262 1.262 13 C 0.120 3.880 14 C 0.481 3.519 15 O -0.489 6.489 16 N -0.685 5.685 17 C 0.151 3.849 18 C -0.065 4.065 19 C -0.116 4.116 20 C 0.508 3.492 21 O -0.496 6.496 22 O -0.358 6.358 23 C 0.037 3.963 24 C -0.088 4.088 25 C -0.116 4.116 26 C -0.089 4.089 27 C -0.120 4.120 28 H 0.044 0.956 29 H 0.052 0.948 30 H 0.047 0.953 31 H 0.048 0.952 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.038 0.962 35 H 0.264 0.736 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.406 0.594 39 H 0.166 0.834 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.100 0.900 43 H 0.134 0.866 44 H 0.131 0.869 45 H 0.074 0.926 46 H 0.073 0.927 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.809 7.262 -17.751 19.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.028 3.972 4 N -0.294 5.294 5 C -0.389 4.389 6 H 0.099 0.901 7 C -0.166 4.166 8 N -0.530 5.530 9 Si 0.692 3.308 10 H -0.215 1.215 11 H -0.224 1.224 12 H -0.186 1.186 13 C -0.012 4.012 14 C 0.267 3.733 15 O -0.360 6.360 16 N -0.332 5.332 17 C 0.055 3.945 18 C -0.085 4.085 19 C -0.118 4.118 20 C 0.353 3.647 21 O -0.384 6.384 22 O -0.275 6.275 23 C -0.057 4.057 24 C -0.107 4.107 25 C -0.134 4.134 26 C -0.092 4.092 27 C -0.176 4.176 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.056 0.944 35 H 0.074 0.926 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.242 0.758 39 H 0.183 0.817 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.119 0.881 43 H 0.152 0.848 44 H 0.149 0.851 45 H 0.092 0.908 46 H 0.092 0.908 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.324 7.827 -16.813 18.593 hybrid contribution 0.545 -1.044 -0.658 1.349 sum -0.779 6.783 -17.471 18.758 Atomic orbital electron populations 1.21720 0.96966 1.00574 1.01222 1.22137 0.94091 1.00463 1.01849 1.20956 0.82960 0.93424 0.99844 1.43778 1.00848 1.84086 1.00704 1.18807 1.05352 1.23158 0.91632 0.90104 1.25468 0.96510 0.97905 0.96723 1.69922 1.07243 1.38434 1.37358 0.87154 0.78241 0.86074 0.79339 1.21496 1.22430 1.18641 1.21434 0.98995 0.90613 0.90115 1.23527 0.76080 0.95437 0.78278 1.90609 1.47461 1.41996 1.55941 1.44231 1.59103 1.05878 1.23968 1.17597 0.93596 0.86140 0.97200 1.21709 1.00164 0.89483 0.97161 1.18899 0.97644 0.91087 1.04131 1.21232 0.83552 0.82904 0.77041 1.90873 1.27039 1.85488 1.35012 1.86523 1.53839 1.16632 1.70491 1.23255 0.93993 0.87251 1.01218 1.21284 0.93499 0.99566 0.96364 1.20747 1.00311 0.91151 1.01211 1.19966 0.93892 0.96074 0.99279 1.20815 0.98979 0.96000 1.01841 0.93644 0.92930 0.93431 0.93307 0.91584 0.92331 0.94394 0.92634 0.89685 0.90810 0.75810 0.81723 0.91906 0.91764 0.88115 0.84764 0.85091 0.90762 0.90788 0.91116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.91 37.16 0.37 -1.72 16 2 C -0.15 -2.57 6.26 -26.73 -0.17 -2.74 16 3 C 0.15 3.11 5.67 -4.05 -0.02 3.08 16 4 N -0.58 -13.55 1.57 -174.61 -0.27 -13.82 16 5 C -0.26 -7.30 9.88 -15.06 -0.15 -7.45 16 6 H 0.08 2.52 8.06 -52.49 -0.42 2.09 16 7 C 0.03 0.98 5.27 -17.43 -0.09 0.89 16 8 N -0.89 -27.00 13.97 55.49 0.78 -26.23 16 9 Si 0.86 20.56 25.20 -169.99 -4.28 16.28 16 10 H -0.29 -6.37 6.62 56.52 0.37 -6.00 16 11 H -0.30 -7.29 7.11 56.52 0.40 -6.89 16 12 H -0.26 -5.97 7.11 56.52 0.40 -5.57 16 13 C 0.12 2.45 5.03 -5.19 -0.03 2.42 16 14 C 0.48 9.80 7.78 -10.98 -0.09 9.72 16 15 O -0.49 -11.96 13.49 5.55 0.07 -11.89 16 16 N -0.68 -10.89 4.87 -9.89 -0.05 -10.94 16 17 C 0.15 2.40 6.38 -83.74 -0.53 1.86 16 18 C -0.06 -1.15 8.31 -38.97 -0.32 -1.48 16 19 C -0.12 -1.81 5.87 -105.00 -0.62 -2.43 16 20 C 0.51 8.17 7.90 34.62 0.27 8.44 16 21 O -0.50 -9.55 16.13 -19.24 -0.31 -9.86 16 22 O -0.36 -4.61 9.81 -40.51 -0.40 -5.00 16 23 C 0.04 0.35 10.56 101.05 1.07 1.42 16 24 C -0.09 -1.08 9.61 -39.15 -0.38 -1.46 16 25 C -0.12 -1.29 9.67 -39.67 -0.38 -1.68 16 26 C -0.09 -1.12 5.90 -104.35 -0.62 -1.74 16 27 C -0.12 -1.15 9.44 36.00 0.34 -0.81 16 28 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 33 H 0.06 1.23 8.01 -51.93 -0.42 0.82 16 34 H 0.04 0.72 8.10 -51.93 -0.42 0.30 16 35 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 36 H 0.09 1.84 3.32 -51.93 -0.17 1.67 16 37 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 38 H 0.41 4.94 7.58 -40.82 -0.31 4.63 16 39 H 0.17 3.47 5.32 -52.49 -0.28 3.19 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.13 1.34 7.61 -52.49 -0.40 0.94 16 44 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 45 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.07 0.60 8.09 -51.93 -0.42 0.19 16 47 H 0.07 0.74 7.05 -51.93 -0.37 0.37 16 LS Contribution 390.17 15.07 5.88 5.88 Total: -1.00 -35.29 390.17 -6.94 -42.23 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -7.01 Total: 7.01 kcal Atomic # 6 Polarization: 7.69 SS G_CDS: -1.34 Total: 6.35 kcal Atomic # 7 Polarization: -51.44 SS G_CDS: 0.45 Total: -50.99 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: -0.63 Total: -26.75 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.28 Total: 16.28 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.29 -6.94 -42.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058909540.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.851 kcal (2) G-P(sol) polarization free energy of solvation -35.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds