Wall clock time and date at job start Tue Mar 31 2020 18:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47365 * 2 1 4 4 N 1.46495 * 109.47315 * 180.02562 * 3 2 1 5 5 C 1.36941 * 119.99751 * 266.49603 * 4 3 2 6 6 H 1.07995 * 120.00004 * 323.23084 * 5 4 3 7 7 C 1.38815 * 120.00026 * 143.24121 * 5 4 3 8 8 N 1.31610 * 120.00104 * 155.40255 * 7 5 4 9 9 Si 1.86802 * 119.99573 * 335.40327 * 7 5 4 10 10 H 1.48498 * 109.47075 * 94.89009 * 9 7 5 11 11 H 1.48501 * 109.46830 * 214.88439 * 9 7 5 12 12 H 1.48500 * 109.47382 * 334.88800 * 9 7 5 13 13 C 1.46498 * 120.00254 * 86.49166 * 4 3 2 14 14 C 1.50705 * 109.47063 * 89.99713 * 13 4 3 15 15 O 1.21288 * 119.99870 * 0.02562 * 14 13 4 16 16 N 1.34773 * 119.99840 * 180.02562 * 14 13 4 17 17 C 1.39960 * 119.99780 * 185.06041 * 16 14 13 18 18 C 1.38623 * 119.99717 * 331.07589 * 17 16 14 19 19 C 1.39507 * 119.77317 * 179.97438 * 18 17 16 20 20 C 1.47752 * 120.11356 * 180.02562 * 19 18 17 21 21 O 1.21463 * 120.00036 * 0.02562 * 20 19 18 22 22 O 1.34706 * 119.99589 * 180.02562 * 20 19 18 23 23 C 1.45200 * 116.99872 * 180.02562 * 22 20 19 24 24 C 1.39665 * 119.77049 * 0.02562 * 19 18 17 25 25 C 1.37965 * 119.99100 * 359.97438 * 24 19 18 26 26 C 1.38272 * 120.22226 * 359.72743 * 25 24 19 27 27 C 1.50697 * 119.87957 * 180.27495 * 26 25 24 28 28 H 1.08998 * 109.47296 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47345 * 299.99816 * 1 2 3 30 30 H 1.09001 * 109.47544 * 59.99685 * 1 2 3 31 31 H 1.08998 * 109.46827 * 239.99931 * 2 1 3 32 32 H 1.09003 * 109.46819 * 120.00188 * 2 1 3 33 33 H 1.09007 * 109.46738 * 59.99813 * 3 2 1 34 34 H 1.09001 * 109.47047 * 300.00620 * 3 2 1 35 35 H 0.97001 * 120.00269 * 180.02562 * 8 7 5 36 36 H 1.08995 * 109.47475 * 210.00077 * 13 4 3 37 37 H 1.09003 * 109.47035 * 330.00177 * 13 4 3 38 38 H 0.96995 * 120.00260 * 5.06092 * 16 14 13 39 39 H 1.08002 * 120.11031 * 359.97438 * 18 17 16 40 40 H 1.08996 * 109.47081 * 300.00294 * 23 22 20 41 41 H 1.08996 * 109.47202 * 59.99814 * 23 22 20 42 42 H 1.09005 * 109.47262 * 179.97438 * 23 22 20 43 43 H 1.07999 * 120.00767 * 180.02562 * 24 19 18 44 44 H 1.07992 * 119.88921 * 180.02562 * 25 24 19 45 45 H 1.09004 * 109.47430 * 270.27739 * 27 26 25 46 46 H 1.09003 * 109.47485 * 30.27592 * 27 26 25 47 47 H 1.08998 * 109.47448 * 150.27832 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1901 1.5147 1.1829 6 1 3.8116 2.1249 1.9895 7 6 5.3713 0.8039 1.3456 8 7 6.2667 1.2072 2.2218 9 14 5.6899 -0.7251 0.3208 10 1 6.4869 -0.3603 -0.8780 11 1 6.4412 -1.7167 1.1316 12 1 4.3951 -1.3137 -0.1059 13 6 4.2370 1.3650 -1.2672 14 6 4.4879 2.7566 -1.7883 15 8 4.0944 3.7185 -1.1629 16 7 5.1495 2.9323 -2.9493 17 6 5.4756 4.2234 -3.3804 18 6 4.6770 5.2972 -3.0188 19 6 5.0067 6.5821 -3.4506 20 6 4.1611 7.7321 -3.0692 21 8 3.1772 7.5597 -2.3781 22 8 4.4813 8.9717 -3.4880 23 6 3.6059 10.0538 -3.0746 24 6 6.1388 6.7776 -4.2448 25 6 6.9269 5.7020 -4.5990 26 6 6.6033 4.4294 -4.1656 27 6 7.4730 3.2610 -4.5520 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9563 -0.8899 35 1 7.0923 0.7107 2.3353 36 1 5.1894 0.8601 -1.1062 37 1 3.6476 0.8057 -1.9939 38 1 5.3997 2.1642 -3.4860 39 1 3.8026 5.1395 -2.4048 40 1 2.5988 9.8694 -3.4485 41 1 3.5849 10.1086 -1.9862 42 1 3.9770 10.9959 -3.4784 43 1 6.3979 7.7707 -4.5809 44 1 7.8021 5.8551 -5.2127 45 1 7.1180 2.8390 -5.4923 46 1 8.5027 3.5980 -4.6708 47 1 7.4273 2.5006 -3.7724 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058909540.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:45 Heat of formation + Delta-G solvation = -89.385559 kcal Electronic energy + Delta-G solvation = -29188.152655 eV Core-core repulsion = 25143.248783 eV Total energy + Delta-G solvation = -4044.903872 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.95300 -41.26001 -39.62661 -37.80614 -37.58784 -35.88602 -34.64557 -33.74796 -33.24270 -31.27920 -29.51573 -28.91336 -27.65410 -27.56409 -24.59936 -23.97080 -23.56109 -22.11300 -21.74437 -21.35062 -19.60179 -18.98384 -18.39612 -18.00645 -17.47060 -17.38331 -17.13380 -16.31470 -16.30861 -16.06610 -15.80584 -15.49105 -14.98826 -14.83783 -14.81250 -14.56821 -14.41271 -14.37673 -14.25498 -14.07954 -13.45001 -13.37699 -13.05139 -12.96921 -12.85249 -12.71759 -12.49959 -12.47136 -12.32123 -12.18538 -12.07760 -11.89901 -11.77111 -11.59593 -11.48220 -11.40275 -10.84262 -10.57596 -9.87935 -9.14751 -8.88366 -8.22294 -5.61457 -0.41887 0.28076 1.25348 1.33224 1.44151 1.55468 1.56241 1.72679 2.08118 2.40017 2.73029 2.99759 3.29041 3.61997 3.77148 3.91775 3.93999 4.13781 4.18780 4.26925 4.27316 4.28439 4.30763 4.32435 4.44213 4.46416 4.62052 4.64738 4.71682 4.73462 4.83156 4.87925 4.90664 5.05187 5.15503 5.22142 5.23495 5.24731 5.28471 5.38108 5.39435 5.45674 5.56257 5.87580 5.91849 6.14856 6.43942 6.59759 6.88301 7.25392 7.54884 7.93999 8.98436 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011339 B = 0.003615 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.709294 B = 7743.698382 C = 8888.769961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.135 4.135 3 C 0.152 3.848 4 N -0.589 5.589 5 C -0.262 4.262 6 H 0.019 0.981 7 C -0.025 4.025 8 N -0.949 5.949 9 Si 0.942 3.058 10 H -0.253 1.253 11 H -0.306 1.306 12 H -0.239 1.239 13 C 0.116 3.884 14 C 0.479 3.521 15 O -0.544 6.544 16 N -0.665 5.665 17 C 0.122 3.878 18 C -0.095 4.095 19 C -0.140 4.140 20 C 0.508 3.492 21 O -0.544 6.544 22 O -0.348 6.348 23 C 0.028 3.972 24 C -0.070 4.070 25 C -0.105 4.105 26 C -0.074 4.074 27 C -0.121 4.121 28 H 0.066 0.934 29 H 0.047 0.953 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.042 0.958 33 H 0.031 0.969 34 H 0.051 0.949 35 H 0.265 0.735 36 H 0.080 0.920 37 H 0.122 0.878 38 H 0.426 0.574 39 H 0.120 0.880 40 H 0.062 0.938 41 H 0.054 0.946 42 H 0.145 0.855 43 H 0.165 0.835 44 H 0.180 0.820 45 H 0.103 0.897 46 H 0.097 0.903 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.041 6.131 -22.714 23.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.175 4.175 3 C 0.027 3.973 4 N -0.309 5.309 5 C -0.392 4.392 6 H 0.037 0.963 7 C -0.221 4.221 8 N -0.592 5.592 9 Si 0.767 3.233 10 H -0.179 1.179 11 H -0.234 1.234 12 H -0.162 1.162 13 C -0.014 4.014 14 C 0.265 3.735 15 O -0.419 6.419 16 N -0.313 5.313 17 C 0.026 3.974 18 C -0.116 4.116 19 C -0.142 4.142 20 C 0.354 3.646 21 O -0.436 6.436 22 O -0.265 6.265 23 C -0.065 4.065 24 C -0.088 4.088 25 C -0.123 4.123 26 C -0.077 4.077 27 C -0.177 4.177 28 H 0.085 0.915 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.061 0.939 33 H 0.050 0.950 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.098 0.902 37 H 0.140 0.860 38 H 0.266 0.734 39 H 0.138 0.862 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.163 0.837 43 H 0.182 0.818 44 H 0.197 0.803 45 H 0.122 0.878 46 H 0.115 0.885 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.531 6.702 -21.879 22.888 hybrid contribution -0.012 -0.437 0.829 0.937 sum 0.519 6.265 -21.050 21.969 Atomic orbital electron populations 1.21667 0.94182 1.02158 1.01824 1.21986 0.96479 0.97633 1.01392 1.21029 0.81516 0.95533 0.99209 1.43800 1.01955 1.84680 1.00441 1.18513 1.05872 1.22330 0.92507 0.96292 1.26216 0.95787 1.01071 0.99048 1.70091 1.08153 1.40113 1.40806 0.85894 0.79331 0.79800 0.78283 1.17877 1.23449 1.16217 1.21578 0.99185 0.91007 0.89630 1.23346 0.76143 0.94783 0.79201 1.90629 1.49927 1.43400 1.57987 1.43756 1.57783 1.07078 1.22711 1.17759 0.95211 0.85210 0.99173 1.21449 1.00047 0.91666 0.98464 1.19005 0.99326 0.90013 1.05837 1.21521 0.82868 0.84058 0.76116 1.90845 1.29160 1.86257 1.37349 1.86506 1.54153 1.15986 1.69809 1.23622 0.94117 0.87667 1.01103 1.21673 0.91492 1.01609 0.94061 1.21309 1.00938 0.89768 1.00308 1.20413 0.92319 0.98167 0.96788 1.20961 0.99593 0.94409 1.02751 0.91495 0.93357 0.91922 0.91717 0.93898 0.95002 0.93095 0.92644 0.90238 0.86024 0.73431 0.86244 0.91934 0.92679 0.83744 0.81762 0.80315 0.87825 0.88452 0.92084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.75 9.91 71.98 0.71 -3.03 16 2 C -0.14 -4.64 6.26 30.59 0.19 -4.45 16 3 C 0.15 6.34 5.67 86.38 0.49 6.83 16 4 N -0.59 -28.58 1.57 -706.35 -1.11 -29.69 16 5 C -0.26 -15.67 9.88 84.03 0.83 -14.83 16 6 H 0.02 1.33 8.06 -2.91 -0.02 1.31 16 7 C -0.03 -1.46 5.27 84.86 0.45 -1.02 16 8 N -0.95 -60.61 13.97 21.65 0.30 -60.31 16 9 Si 0.94 42.46 25.20 68.60 1.73 44.19 16 10 H -0.25 -9.95 6.62 99.48 0.66 -9.30 16 11 H -0.31 -14.24 7.11 99.48 0.71 -13.54 16 12 H -0.24 -9.83 7.11 99.48 0.71 -9.12 16 13 C 0.12 4.64 5.03 85.64 0.43 5.07 16 14 C 0.48 19.92 7.78 87.66 0.68 20.60 16 15 O -0.54 -28.60 13.49 -3.05 -0.04 -28.64 16 16 N -0.66 -20.59 4.87 -303.60 -1.48 -22.07 16 17 C 0.12 3.80 6.38 38.11 0.24 4.04 16 18 C -0.10 -3.58 8.31 22.67 0.19 -3.39 16 19 C -0.14 -4.44 5.87 -20.11 -0.12 -4.55 16 20 C 0.51 17.02 7.90 70.34 0.56 17.58 16 21 O -0.54 -22.78 16.13 19.96 0.32 -22.46 16 22 O -0.35 -8.76 9.81 -56.15 -0.55 -9.31 16 23 C 0.03 0.52 10.56 113.37 1.20 1.71 16 24 C -0.07 -1.51 9.61 22.55 0.22 -1.30 16 25 C -0.11 -1.86 9.67 22.21 0.21 -1.65 16 26 C -0.07 -1.62 5.90 -19.69 -0.12 -1.73 16 27 C -0.12 -1.71 9.44 71.24 0.67 -1.03 16 28 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.05 1.31 8.14 -2.38 -0.02 1.30 16 30 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.06 2.01 8.14 -2.39 -0.02 2.00 16 32 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.03 1.45 8.01 -2.38 -0.02 1.43 16 34 H 0.05 1.97 8.10 -2.39 -0.02 1.95 16 35 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 36 H 0.08 3.27 3.32 -2.39 -0.01 3.26 16 37 H 0.12 3.65 8.07 -2.39 -0.02 3.63 16 38 H 0.43 9.22 7.58 -92.71 -0.70 8.51 16 39 H 0.12 5.60 5.32 -2.91 -0.02 5.58 16 40 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.14 1.39 8.14 -2.38 -0.02 1.37 16 43 H 0.16 2.56 7.61 -2.91 -0.02 2.54 16 44 H 0.18 1.56 8.06 -2.91 -0.02 1.54 16 45 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 46 H 0.10 0.99 8.09 -2.39 -0.02 0.97 16 47 H 0.06 1.02 7.05 -2.39 -0.02 1.01 16 Total: -1.00 -88.46 390.17 6.25 -82.22 By element: Atomic # 1 Polarization: 27.00 SS G_CDS: 0.24 Total: 27.23 kcal Atomic # 6 Polarization: 12.00 SS G_CDS: 6.84 Total: 18.84 kcal Atomic # 7 Polarization: -109.78 SS G_CDS: -2.29 Total: -112.07 kcal Atomic # 8 Polarization: -60.14 SS G_CDS: -0.27 Total: -60.41 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 1.73 Total: 44.19 kcal Total: -88.46 6.25 -82.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058909540.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.170 kcal (2) G-P(sol) polarization free energy of solvation -88.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds