Wall clock time and date at job start Tue Mar 31 2020 18:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46923 * 2 1 4 4 N 1.46896 * 109.47281 * 181.87610 * 3 2 1 5 5 C 1.46895 * 111.00491 * 61.37092 * 4 3 2 6 6 C 1.50705 * 109.47059 * 66.04409 * 5 4 3 7 7 O 1.21295 * 119.99642 * 0.02562 * 6 5 4 8 8 N 1.34775 * 120.00005 * 179.97438 * 6 5 4 9 9 C 1.37102 * 119.99800 * 180.02562 * 8 6 5 10 10 H 1.07997 * 119.99635 * 0.02562 * 9 8 6 11 11 C 1.38951 * 119.99826 * 180.02562 * 9 8 6 12 12 N 1.31414 * 119.99762 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 120.00082 * 0.02562 * 11 9 8 14 14 H 1.48493 * 109.47084 * 89.99671 * 13 11 9 15 15 H 1.48499 * 109.47123 * 209.99785 * 13 11 9 16 16 H 1.48499 * 109.46934 * 329.99440 * 13 11 9 17 17 C 1.46903 * 110.99795 * 297.41617 * 4 3 2 18 18 C 1.52996 * 109.47495 * 290.07351 * 17 4 3 19 19 H 1.09000 * 109.70155 * 56.62518 * 18 17 4 20 20 C 1.53469 * 109.70764 * 177.20533 * 18 17 4 21 21 O 1.43172 * 108.23470 * 179.38179 * 20 18 17 22 22 C 1.36102 * 116.72813 * 313.82297 * 21 20 18 23 23 C 1.38703 * 119.38980 * 197.14762 * 22 21 20 24 24 C 1.38194 * 120.06721 * 180.18434 * 23 22 21 25 25 C 1.38254 * 120.11089 * 359.97438 * 24 23 22 26 26 C 1.38197 * 120.11480 * 359.94400 * 25 24 23 27 27 C 1.38704 * 120.06560 * 0.02562 * 26 25 24 28 28 O 1.36105 * 119.39535 * 180.15137 * 27 26 25 29 29 H 1.09003 * 109.46477 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47212 * 299.99607 * 1 2 3 31 31 H 1.09000 * 109.47215 * 60.00465 * 1 2 3 32 32 H 1.08996 * 109.47694 * 239.99812 * 2 1 3 33 33 H 1.09000 * 109.47215 * 119.99535 * 2 1 3 34 34 H 1.08997 * 109.47243 * 61.86890 * 3 2 1 35 35 H 1.09006 * 109.46640 * 301.87245 * 3 2 1 36 36 H 1.09000 * 109.47908 * 186.04790 * 5 4 3 37 37 H 1.09008 * 109.47368 * 306.05065 * 5 4 3 38 38 H 0.96994 * 120.00167 * 0.02562 * 8 6 5 39 39 H 0.96994 * 119.99571 * 179.97438 * 12 11 9 40 40 H 1.09006 * 109.46941 * 50.07344 * 17 4 3 41 41 H 1.09005 * 109.47342 * 170.06876 * 17 4 3 42 42 H 1.08996 * 109.70937 * 299.12420 * 20 18 17 43 43 H 1.08999 * 109.70852 * 59.75518 * 20 18 17 44 44 H 1.08004 * 119.96748 * 0.16267 * 23 22 21 45 45 H 1.08002 * 119.94782 * 179.97438 * 24 23 22 46 46 H 1.07995 * 119.94622 * 179.97438 * 25 24 23 47 47 H 1.07998 * 119.96582 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5082 1.4429 -0.0453 5 6 3.9973 0.7991 -1.2718 6 6 3.6015 1.6282 -2.4665 7 8 2.9742 2.6546 -2.3113 8 7 3.9455 1.2296 -3.7071 9 6 3.5859 1.9842 -4.7939 10 1 3.0273 2.8981 -4.6557 11 6 3.9401 1.5730 -6.0730 12 7 3.5958 2.2965 -7.1146 13 14 4.9056 -0.0082 -6.3120 14 1 3.9630 -1.1437 -6.4768 15 1 5.7558 0.1093 -7.5239 16 1 5.7658 -0.2471 -5.1253 17 6 4.0719 0.7982 1.1483 18 6 3.8299 1.6867 2.3702 19 1 2.7630 1.8834 2.4759 20 6 4.3546 0.9867 3.6311 21 8 4.1259 1.8495 4.7505 22 6 4.4673 3.1578 4.5948 23 6 4.6129 3.9613 5.7159 24 6 4.9555 5.2926 5.5738 25 6 5.1544 5.8270 4.3144 26 6 5.0126 5.0314 3.1933 27 6 4.6695 3.6944 3.3289 28 8 4.5364 2.9226 2.2158 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.7043 1.9466 0.9062 35 1 1.6494 1.9659 -0.8728 36 1 5.0834 0.7164 -1.2306 37 1 3.5603 -0.1957 -1.3592 38 1 4.4475 0.4090 -3.8312 39 1 3.8434 2.0096 -8.0075 40 1 3.5910 -0.1681 1.3007 41 1 5.1435 0.6531 1.0111 42 1 3.8243 0.0457 3.7768 43 1 5.4227 0.7953 3.5278 44 1 4.4581 3.5463 6.7009 45 1 5.0680 5.9166 6.4481 46 1 5.4217 6.8678 4.2064 47 1 5.1690 5.4513 2.2106 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066492975.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:45 Heat of formation + Delta-G solvation = -65.674952 kcal Electronic energy + Delta-G solvation = -29191.026975 eV Core-core repulsion = 25147.151273 eV Total energy + Delta-G solvation = -4043.875703 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.39709 -39.21292 -37.94091 -37.41995 -36.81137 -33.92651 -33.08400 -31.83030 -31.56832 -30.75569 -29.05756 -27.78316 -26.50710 -24.96499 -23.82015 -22.99972 -22.73614 -21.16646 -20.12727 -19.28107 -18.79474 -18.15336 -17.67433 -16.95725 -16.19079 -15.66767 -15.63573 -15.28935 -15.18990 -14.90776 -14.65148 -14.43118 -14.27162 -13.97131 -13.79644 -13.73262 -13.49957 -13.26256 -13.04857 -12.61265 -12.19313 -12.13770 -12.02182 -11.77376 -11.69168 -11.63506 -11.47651 -11.32754 -11.31749 -11.16861 -10.85969 -10.60356 -10.48216 -10.31545 -9.96637 -9.51506 -8.76244 -8.55464 -8.17006 -8.15373 -7.90583 -6.30030 -3.81212 1.17164 1.20573 2.87912 3.02532 3.06161 3.07668 3.14889 3.61367 3.65911 3.75423 4.10591 4.20912 4.54369 4.57242 4.59068 4.74115 4.85858 4.93068 4.95426 5.02699 5.12679 5.15538 5.20575 5.22575 5.31035 5.36047 5.36738 5.48720 5.54495 5.63476 5.74651 5.77875 5.90111 5.91692 5.95885 6.02274 6.09344 6.18378 6.24433 6.34318 6.50936 6.55542 6.82316 7.11864 7.24983 7.38537 7.59602 8.16023 8.61667 8.96809 9.43766 9.85266 10.83235 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015422 B = 0.002760 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.120540 B =10140.756743 C =10981.067311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.167 4.167 3 C 0.045 3.955 4 N -0.502 5.502 5 C 0.039 3.961 6 C 0.455 3.545 7 O -0.556 6.556 8 N -0.592 5.592 9 C -0.302 4.302 10 H 0.120 0.880 11 C 0.041 3.959 12 N -0.882 5.882 13 Si 0.879 3.121 14 H -0.272 1.272 15 H -0.277 1.277 16 H -0.269 1.269 17 C 0.057 3.943 18 C 0.060 3.940 19 H 0.086 0.914 20 C 0.026 3.974 21 O -0.308 6.308 22 C 0.041 3.959 23 C -0.116 4.116 24 C -0.124 4.124 25 C -0.115 4.115 26 C -0.114 4.114 27 C 0.059 3.941 28 O -0.279 6.279 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.109 0.891 36 H 0.089 0.911 37 H 0.054 0.946 38 H 0.369 0.631 39 H 0.273 0.727 40 H 0.063 0.937 41 H 0.086 0.914 42 H 0.120 0.880 43 H 0.078 0.922 44 H 0.130 0.870 45 H 0.129 0.871 46 H 0.130 0.870 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.264 -4.765 24.299 24.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.206 4.206 3 C -0.083 4.083 4 N -0.224 5.224 5 C -0.092 4.092 6 C 0.241 3.759 7 O -0.437 6.437 8 N -0.232 5.232 9 C -0.431 4.431 10 H 0.137 0.863 11 C -0.162 4.162 12 N -0.522 5.522 13 Si 0.705 3.295 14 H -0.197 1.197 15 H -0.202 1.202 16 H -0.195 1.195 17 C -0.072 4.072 18 C 0.003 3.997 19 H 0.104 0.896 20 C -0.050 4.050 21 O -0.223 6.223 22 C -0.004 4.004 23 C -0.135 4.135 24 C -0.143 4.143 25 C -0.134 4.134 26 C -0.132 4.132 27 C 0.014 3.986 28 O -0.192 6.192 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.127 0.873 36 H 0.107 0.893 37 H 0.072 0.928 38 H 0.202 0.798 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.104 0.896 42 H 0.138 0.862 43 H 0.096 0.904 44 H 0.148 0.852 45 H 0.147 0.853 46 H 0.148 0.852 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.994 -3.589 24.110 24.457 hybrid contribution 0.540 -2.310 -0.493 2.422 sum 2.534 -5.899 23.617 24.474 Atomic orbital electron populations 1.21639 0.95273 1.01277 1.02128 1.22235 0.97122 0.99739 1.01464 1.22532 0.86345 0.94823 1.04574 1.61725 1.08088 1.53095 0.99527 1.21965 1.00879 0.96056 0.90332 1.19576 0.85147 0.87919 0.83269 1.90533 1.42691 1.25639 1.84871 1.42206 1.51335 1.23568 1.06113 1.19419 1.33644 1.07175 0.82878 0.86279 1.25031 0.97906 0.98041 0.95218 1.69621 1.45937 1.38099 0.98592 0.86683 0.80448 0.83715 0.78608 1.19725 1.20205 1.19502 1.22118 1.01521 0.94124 0.89415 1.23175 0.96792 0.84379 0.95369 0.89616 1.23631 1.02490 0.93437 0.85435 1.86278 1.80959 1.16305 1.38731 1.18951 1.03816 0.84478 0.93171 1.20394 1.02739 0.93588 0.96760 1.20871 1.01369 0.94308 0.97703 1.20937 1.00880 0.99867 0.91691 1.20566 1.02275 0.90024 1.00363 1.19092 1.02271 0.92157 0.85120 1.86553 1.71956 1.31140 1.29589 0.93104 0.92945 0.92138 0.91586 0.92634 0.91531 0.87286 0.89288 0.92839 0.79805 0.91657 0.91974 0.89594 0.86209 0.90425 0.85164 0.85333 0.85185 0.84491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 37.16 0.37 -1.29 16 2 C -0.17 -2.04 5.29 -26.73 -0.14 -2.18 16 3 C 0.04 0.68 4.84 -3.83 -0.02 0.66 16 4 N -0.50 -7.78 4.36 -236.07 -1.03 -8.81 16 5 C 0.04 0.63 5.23 -4.98 -0.03 0.61 16 6 C 0.46 10.19 7.50 -10.98 -0.08 10.11 16 7 O -0.56 -14.69 13.89 5.54 0.08 -14.61 16 8 N -0.59 -13.98 5.09 -10.96 -0.06 -14.04 16 9 C -0.30 -8.51 10.16 -14.93 -0.15 -8.66 16 10 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 11 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 12 N -0.88 -25.79 13.96 55.50 0.77 -25.02 16 13 Si 0.88 19.30 27.74 -169.99 -4.71 14.59 16 14 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 15 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 16 H -0.27 -5.39 6.52 56.52 0.37 -5.02 16 17 C 0.06 0.64 4.51 -3.82 -0.02 0.63 16 18 C 0.06 0.71 3.02 -26.49 -0.08 0.63 16 19 H 0.09 1.05 6.52 -51.93 -0.34 0.71 16 20 C 0.03 0.25 6.56 37.40 0.25 0.49 16 21 O -0.31 -3.65 10.42 -32.85 -0.34 -3.99 16 22 C 0.04 0.51 6.49 -39.14 -0.25 0.26 16 23 C -0.12 -1.22 9.96 -39.43 -0.39 -1.61 16 24 C -0.12 -1.15 10.04 -39.59 -0.40 -1.55 16 25 C -0.12 -1.15 10.04 -39.59 -0.40 -1.55 16 26 C -0.11 -1.41 9.96 -39.42 -0.39 -1.81 16 27 C 0.06 0.81 6.49 -39.14 -0.25 0.56 16 28 O -0.28 -4.14 10.01 -32.85 -0.33 -4.46 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.87 6.21 -51.93 -0.32 0.55 16 33 H 0.06 0.56 6.35 -51.93 -0.33 0.23 16 34 H 0.07 0.95 6.46 -51.93 -0.34 0.61 16 35 H 0.11 2.10 5.86 -51.93 -0.30 1.79 16 36 H 0.09 1.29 7.88 -51.93 -0.41 0.88 16 37 H 0.05 0.75 6.00 -51.92 -0.31 0.44 16 38 H 0.37 7.65 5.76 -40.82 -0.24 7.41 16 39 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 40 H 0.06 0.56 5.97 -51.93 -0.31 0.25 16 41 H 0.09 0.92 7.85 -51.93 -0.41 0.51 16 42 H 0.12 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 45 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 46 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 47 H 0.14 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 375.21 15.07 5.65 5.65 Total: -1.00 -33.87 375.21 -8.72 -42.59 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: -6.67 Total: 11.79 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: -2.09 Total: -3.69 kcal Atomic # 7 Polarization: -47.55 SS G_CDS: -0.31 Total: -47.86 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.59 Total: -23.07 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -4.71 Total: 14.59 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.87 -8.72 -42.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066492975.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.085 kcal (2) G-P(sol) polarization free energy of solvation -33.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds