Wall clock time and date at job start Tue Mar 31 2020 18:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46923 * 2 1 4 4 N 1.46896 * 109.47281 * 181.87610 * 3 2 1 5 5 C 1.46895 * 111.00491 * 61.37092 * 4 3 2 6 6 C 1.50705 * 109.47059 * 66.04409 * 5 4 3 7 7 O 1.21295 * 119.99642 * 0.02562 * 6 5 4 8 8 N 1.34775 * 120.00005 * 179.97438 * 6 5 4 9 9 C 1.37102 * 119.99800 * 180.02562 * 8 6 5 10 10 H 1.07997 * 119.99635 * 0.02562 * 9 8 6 11 11 C 1.38951 * 119.99826 * 180.02562 * 9 8 6 12 12 N 1.31414 * 119.99762 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 120.00082 * 0.02562 * 11 9 8 14 14 H 1.48493 * 109.47084 * 89.99671 * 13 11 9 15 15 H 1.48499 * 109.47123 * 209.99785 * 13 11 9 16 16 H 1.48499 * 109.46934 * 329.99440 * 13 11 9 17 17 C 1.46903 * 110.99795 * 297.41617 * 4 3 2 18 18 C 1.52996 * 109.47495 * 290.07351 * 17 4 3 19 19 H 1.09000 * 109.70155 * 56.62518 * 18 17 4 20 20 C 1.53469 * 109.70764 * 177.20533 * 18 17 4 21 21 O 1.43172 * 108.23470 * 179.38179 * 20 18 17 22 22 C 1.36102 * 116.72813 * 313.82297 * 21 20 18 23 23 C 1.38703 * 119.38980 * 197.14762 * 22 21 20 24 24 C 1.38194 * 120.06721 * 180.18434 * 23 22 21 25 25 C 1.38254 * 120.11089 * 359.97438 * 24 23 22 26 26 C 1.38197 * 120.11480 * 359.94400 * 25 24 23 27 27 C 1.38704 * 120.06560 * 0.02562 * 26 25 24 28 28 O 1.36105 * 119.39535 * 180.15137 * 27 26 25 29 29 H 1.09003 * 109.46477 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47212 * 299.99607 * 1 2 3 31 31 H 1.09000 * 109.47215 * 60.00465 * 1 2 3 32 32 H 1.08996 * 109.47694 * 239.99812 * 2 1 3 33 33 H 1.09000 * 109.47215 * 119.99535 * 2 1 3 34 34 H 1.08997 * 109.47243 * 61.86890 * 3 2 1 35 35 H 1.09006 * 109.46640 * 301.87245 * 3 2 1 36 36 H 1.09000 * 109.47908 * 186.04790 * 5 4 3 37 37 H 1.09008 * 109.47368 * 306.05065 * 5 4 3 38 38 H 0.96994 * 120.00167 * 0.02562 * 8 6 5 39 39 H 0.96994 * 119.99571 * 179.97438 * 12 11 9 40 40 H 1.09006 * 109.46941 * 50.07344 * 17 4 3 41 41 H 1.09005 * 109.47342 * 170.06876 * 17 4 3 42 42 H 1.08996 * 109.70937 * 299.12420 * 20 18 17 43 43 H 1.08999 * 109.70852 * 59.75518 * 20 18 17 44 44 H 1.08004 * 119.96748 * 0.16267 * 23 22 21 45 45 H 1.08002 * 119.94782 * 179.97438 * 24 23 22 46 46 H 1.07995 * 119.94622 * 179.97438 * 25 24 23 47 47 H 1.07998 * 119.96582 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5082 1.4429 -0.0453 5 6 3.9973 0.7991 -1.2718 6 6 3.6015 1.6282 -2.4665 7 8 2.9742 2.6546 -2.3113 8 7 3.9455 1.2296 -3.7071 9 6 3.5859 1.9842 -4.7939 10 1 3.0273 2.8981 -4.6557 11 6 3.9401 1.5730 -6.0730 12 7 3.5958 2.2965 -7.1146 13 14 4.9056 -0.0082 -6.3120 14 1 3.9630 -1.1437 -6.4768 15 1 5.7558 0.1093 -7.5239 16 1 5.7658 -0.2471 -5.1253 17 6 4.0719 0.7982 1.1483 18 6 3.8299 1.6867 2.3702 19 1 2.7630 1.8834 2.4759 20 6 4.3546 0.9867 3.6311 21 8 4.1259 1.8495 4.7505 22 6 4.4673 3.1578 4.5948 23 6 4.6129 3.9613 5.7159 24 6 4.9555 5.2926 5.5738 25 6 5.1544 5.8270 4.3144 26 6 5.0126 5.0314 3.1933 27 6 4.6695 3.6944 3.3289 28 8 4.5364 2.9226 2.2158 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.7043 1.9466 0.9062 35 1 1.6494 1.9659 -0.8728 36 1 5.0834 0.7164 -1.2306 37 1 3.5603 -0.1957 -1.3592 38 1 4.4475 0.4090 -3.8312 39 1 3.8434 2.0096 -8.0075 40 1 3.5910 -0.1681 1.3007 41 1 5.1435 0.6531 1.0111 42 1 3.8243 0.0457 3.7768 43 1 5.4227 0.7953 3.5278 44 1 4.4581 3.5463 6.7009 45 1 5.0680 5.9166 6.4481 46 1 5.4217 6.8678 4.2064 47 1 5.1690 5.4513 2.2106 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066492975.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:44 Heat of formation + Delta-G solvation = -90.549328 kcal Electronic energy + Delta-G solvation = -29192.105609 eV Core-core repulsion = 25147.151273 eV Total energy + Delta-G solvation = -4044.954337 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.25615 -40.69853 -39.08279 -38.36469 -37.95041 -35.93349 -34.05198 -33.73795 -32.72534 -31.58417 -30.01540 -29.08673 -27.44169 -26.58284 -25.02539 -23.98395 -23.61267 -22.20848 -21.26789 -21.02843 -20.03202 -19.65879 -18.52012 -17.96007 -17.54711 -16.99677 -16.84939 -16.59055 -16.19526 -16.07340 -15.64078 -15.41183 -15.31547 -15.19182 -15.02396 -14.84303 -14.80206 -14.61722 -14.38693 -13.99950 -13.78730 -13.18994 -12.99176 -12.85848 -12.75267 -12.69839 -12.63788 -12.54214 -12.40825 -12.30423 -12.08755 -11.98271 -11.80909 -11.54623 -11.34757 -11.28870 -10.34578 -10.21794 -9.60862 -9.08892 -9.01996 -8.40506 -6.01012 0.32778 0.36651 1.29653 1.35267 1.44239 1.98387 2.06688 2.23315 2.28038 2.53839 2.77743 3.14413 3.15955 3.37342 3.68528 3.71571 3.80735 3.99728 4.00606 4.11921 4.15385 4.24644 4.32045 4.34733 4.36105 4.40854 4.42764 4.49165 4.50727 4.61759 4.64491 4.74298 4.89286 4.95076 4.98644 5.18936 5.21468 5.23447 5.25975 5.39782 5.54055 5.54296 5.75107 5.89582 5.97629 6.02295 6.20463 6.50107 6.61360 6.90324 7.41588 8.00305 8.77483 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015422 B = 0.002760 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.120540 B =10140.756743 C =10981.067311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.157 4.157 3 C 0.052 3.948 4 N -0.532 5.532 5 C 0.052 3.948 6 C 0.453 3.547 7 O -0.605 6.605 8 N -0.594 5.594 9 C -0.325 4.325 10 H 0.052 0.948 11 C -0.017 4.017 12 N -0.937 5.937 13 Si 0.965 3.035 14 H -0.256 1.256 15 H -0.276 1.276 16 H -0.231 1.231 17 C 0.062 3.938 18 C 0.056 3.944 19 H 0.073 0.927 20 C 0.029 3.971 21 O -0.317 6.317 22 C 0.027 3.973 23 C -0.121 4.121 24 C -0.116 4.116 25 C -0.114 4.114 26 C -0.139 4.139 27 C 0.031 3.969 28 O -0.311 6.311 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.034 0.966 32 H 0.059 0.941 33 H 0.089 0.911 34 H 0.068 0.932 35 H 0.056 0.944 36 H 0.117 0.883 37 H 0.088 0.912 38 H 0.389 0.611 39 H 0.278 0.722 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.156 0.844 43 H 0.086 0.914 44 H 0.151 0.849 45 H 0.164 0.836 46 H 0.155 0.845 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.053 -8.342 27.403 28.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.196 4.196 3 C -0.076 4.076 4 N -0.255 5.255 5 C -0.079 4.079 6 C 0.240 3.760 7 O -0.489 6.489 8 N -0.236 5.236 9 C -0.454 4.454 10 H 0.071 0.929 11 C -0.215 4.215 12 N -0.578 5.578 13 Si 0.785 3.215 14 H -0.180 1.180 15 H -0.201 1.201 16 H -0.154 1.154 17 C -0.066 4.066 18 C -0.001 4.001 19 H 0.091 0.909 20 C -0.046 4.046 21 O -0.232 6.232 22 C -0.018 4.018 23 C -0.139 4.139 24 C -0.134 4.134 25 C -0.132 4.132 26 C -0.157 4.157 27 C -0.014 4.014 28 O -0.226 6.226 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.053 0.947 32 H 0.077 0.923 33 H 0.108 0.892 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.135 0.865 37 H 0.106 0.894 38 H 0.224 0.776 39 H 0.088 0.912 40 H 0.116 0.884 41 H 0.116 0.884 42 H 0.173 0.827 43 H 0.104 0.896 44 H 0.169 0.831 45 H 0.181 0.819 46 H 0.172 0.828 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 3.785 -7.177 27.255 28.437 hybrid contribution -0.108 -0.993 -1.371 1.697 sum 3.677 -8.171 25.883 27.390 Atomic orbital electron populations 1.21642 0.94996 1.02292 1.01386 1.22157 0.97366 0.97462 1.02634 1.22288 0.86674 0.96517 1.02141 1.61570 1.08215 1.55015 1.00730 1.21877 1.02604 0.95790 0.87585 1.20903 0.82940 0.87589 0.84521 1.90527 1.44318 1.28211 1.85855 1.42026 1.52160 1.23967 1.05424 1.18969 1.34688 1.06372 0.85371 0.92934 1.26125 0.98699 1.02855 0.93860 1.69813 1.47540 1.40968 0.99474 0.85359 0.78958 0.77336 0.79828 1.18049 1.20145 1.15379 1.22230 1.02264 0.94955 0.87114 1.23311 0.96065 0.83874 0.96854 0.90881 1.23835 1.03442 0.93796 0.83532 1.86252 1.81094 1.16158 1.39669 1.19184 1.04269 0.85152 0.93199 1.20789 1.01999 0.93998 0.97119 1.21300 0.99425 0.94219 0.98446 1.21268 0.99876 1.00758 0.91330 1.20739 1.03682 0.90443 1.00873 1.19355 1.03862 0.92639 0.85545 1.86494 1.72636 1.32599 1.30835 0.91103 0.92005 0.94703 0.92264 0.89215 0.91326 0.92571 0.86514 0.89397 0.77562 0.91220 0.88409 0.88404 0.82661 0.89627 0.83114 0.81859 0.82784 0.85801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 9.91 71.98 0.71 -2.44 16 2 C -0.16 -3.51 5.29 30.60 0.16 -3.35 16 3 C 0.05 1.58 4.84 86.30 0.42 1.99 16 4 N -0.53 -15.99 4.36 -900.77 -3.93 -19.92 16 5 C 0.05 1.59 5.23 85.56 0.45 2.04 16 6 C 0.45 20.73 7.50 87.66 0.66 21.39 16 7 O -0.61 -34.27 13.89 -3.08 -0.04 -34.32 16 8 N -0.59 -28.27 5.09 -306.97 -1.56 -29.83 16 9 C -0.32 -19.28 10.16 84.04 0.85 -18.42 16 10 H 0.05 3.73 7.39 -2.91 -0.02 3.71 16 11 C -0.02 -0.97 5.50 84.93 0.47 -0.50 16 12 N -0.94 -57.26 13.96 21.66 0.30 -56.96 16 13 Si 0.97 39.00 27.74 68.60 1.90 40.91 16 14 H -0.26 -9.73 7.11 99.48 0.71 -9.03 16 15 H -0.28 -11.13 7.11 99.48 0.71 -10.43 16 16 H -0.23 -7.80 6.52 99.48 0.65 -7.15 16 17 C 0.06 1.22 4.51 86.30 0.39 1.61 16 18 C 0.06 1.24 3.02 30.75 0.09 1.33 16 19 H 0.07 1.76 6.52 -2.39 -0.02 1.74 16 20 C 0.03 0.47 6.56 72.14 0.47 0.95 16 21 O -0.32 -6.93 10.42 -82.49 -0.86 -7.78 16 22 C 0.03 0.65 6.49 22.56 0.15 0.79 16 23 C -0.12 -2.30 9.96 22.37 0.22 -2.08 16 24 C -0.12 -1.87 10.04 22.26 0.22 -1.64 16 25 C -0.11 -2.16 10.04 22.26 0.22 -1.94 16 26 C -0.14 -3.57 9.96 22.37 0.22 -3.35 16 27 C 0.03 0.87 6.49 22.56 0.15 1.02 16 28 O -0.31 -9.40 10.01 -82.52 -0.83 -10.23 16 29 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.06 1.41 6.21 -2.39 -0.01 1.40 16 33 H 0.09 1.41 6.35 -2.39 -0.02 1.40 16 34 H 0.07 2.01 6.46 -2.39 -0.02 1.99 16 35 H 0.06 2.32 5.86 -2.38 -0.01 2.31 16 36 H 0.12 2.97 7.88 -2.39 -0.02 2.95 16 37 H 0.09 2.13 6.00 -2.38 -0.01 2.12 16 38 H 0.39 15.23 5.76 -92.71 -0.53 14.69 16 39 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 40 H 0.10 1.25 5.97 -2.38 -0.01 1.23 16 41 H 0.10 1.73 7.85 -2.38 -0.02 1.71 16 42 H 0.16 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.15 2.17 8.06 -2.91 -0.02 2.14 16 45 H 0.16 1.46 8.06 -2.91 -0.02 1.43 16 46 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 47 H 0.12 3.34 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -83.82 375.21 1.25 -82.57 By element: Atomic # 1 Polarization: 37.77 SS G_CDS: 0.40 Total: 38.17 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: 5.86 Total: -2.60 kcal Atomic # 7 Polarization: -101.52 SS G_CDS: -5.19 Total: -106.71 kcal Atomic # 8 Polarization: -50.60 SS G_CDS: -1.73 Total: -52.33 kcal Atomic # 14 Polarization: 39.00 SS G_CDS: 1.90 Total: 40.91 kcal Total: -83.82 1.25 -82.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066492975.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.984 kcal (2) G-P(sol) polarization free energy of solvation -83.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds