Wall clock time and date at job start Tue Mar 31 2020 17:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47215 * 2 1 4 4 H 1.08997 * 109.51447 * 55.09556 * 3 2 1 5 5 C 1.53712 * 109.48540 * 175.36516 * 3 2 1 6 6 N 1.47152 * 108.16277 * 172.39749 * 5 3 2 7 7 C 1.34772 * 120.98212 * 129.42608 * 6 5 3 8 8 O 1.21587 * 120.00308 * 354.38353 * 7 6 5 9 9 N 1.34783 * 119.99925 * 174.38185 * 7 6 5 10 10 C 1.46495 * 119.99962 * 184.96591 * 9 7 6 11 11 C 1.50706 * 109.47119 * 180.02562 * 10 9 7 12 12 C 1.38300 * 119.92666 * 269.72969 * 11 10 9 13 13 C 1.38101 * 120.06593 * 179.72863 * 12 11 10 14 14 C 1.38882 * 119.92679 * 0.53897 * 13 12 11 15 15 O 1.35759 * 120.06617 * 179.75450 * 14 13 12 16 16 C 1.34824 * 117.00135 * 174.62835 * 15 14 13 17 17 H 1.08007 * 119.99482 * 5.03259 * 16 15 14 18 18 C 1.38652 * 120.00412 * 185.03696 * 16 15 14 19 19 N 1.31558 * 119.99460 * 359.97438 * 18 16 15 20 20 Si 1.86791 * 120.00082 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47600 * 59.99914 * 20 18 16 22 22 H 1.48508 * 109.47012 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47212 * 299.99523 * 20 18 16 24 24 C 1.38875 * 119.86379 * 359.73326 * 14 13 12 25 25 C 1.38093 * 119.93108 * 359.97438 * 24 14 13 26 26 C 1.47154 * 118.03505 * 309.15760 * 6 5 3 27 27 C 1.53295 * 108.38301 * 50.78338 * 26 6 5 28 28 O 1.42960 * 109.22346 * 307.69843 * 27 26 6 29 29 H 1.09002 * 109.46874 * 300.00166 * 1 2 3 30 30 H 1.09006 * 109.46968 * 59.99998 * 1 2 3 31 31 H 1.08994 * 109.46812 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47288 * 240.00091 * 2 1 3 33 33 H 1.08999 * 109.47548 * 119.99698 * 2 1 3 34 34 H 1.08998 * 109.84152 * 52.71676 * 5 3 2 35 35 H 1.09006 * 109.74210 * 292.02253 * 5 3 2 36 36 H 0.96998 * 119.99873 * 4.96599 * 9 7 6 37 37 H 1.08996 * 109.47122 * 59.99894 * 10 9 7 38 38 H 1.09007 * 109.47423 * 300.00075 * 10 9 7 39 39 H 1.07998 * 119.96962 * 359.97438 * 12 11 10 40 40 H 1.07999 * 120.03773 * 180.27430 * 13 12 11 41 41 H 0.97004 * 119.99318 * 180.02562 * 19 18 16 42 42 H 1.07999 * 120.03060 * 179.97438 * 24 14 13 43 43 H 1.08003 * 119.96444 * 179.97438 * 25 24 14 44 44 H 1.08996 * 109.68020 * 170.50991 * 26 6 5 45 45 H 1.09000 * 109.67671 * 291.06569 * 26 6 5 46 46 H 1.08994 * 109.51661 * 67.62697 * 27 26 6 47 47 H 1.09006 * 109.51142 * 187.72826 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6072 1.9818 0.8425 5 6 3.5727 1.4445 0.1171 6 7 4.0453 2.8255 -0.0697 7 6 4.8935 3.3935 0.8102 8 8 5.1995 2.8026 1.8278 9 7 5.4026 4.6166 0.5621 10 6 6.4071 5.1882 1.4622 11 6 6.8083 6.5532 0.9652 12 6 7.8666 6.6832 0.0845 13 6 8.2332 7.9321 -0.3772 14 6 7.5448 9.0592 0.0527 15 8 7.9059 10.2888 -0.3954 16 6 7.1284 11.3270 -0.0276 17 1 6.3113 11.1721 0.6614 18 6 7.3778 12.5935 -0.5339 19 7 8.3735 12.7821 -1.3728 20 14 6.3010 14.0320 -0.0237 21 1 6.3802 14.2121 1.4483 22 1 6.7729 15.2675 -0.6991 23 1 4.8943 13.7602 -0.4142 24 6 6.4861 8.9258 0.9415 25 6 6.1206 7.6736 1.3948 26 6 3.5690 3.5659 -1.2489 27 6 2.0408 3.4587 -1.3023 28 8 1.6623 2.0825 -1.2213 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 4.0032 0.8021 -0.6511 35 1 3.8671 1.0860 1.1035 36 1 5.1038 5.1183 -0.2124 37 1 7.2823 4.5392 1.4890 38 1 5.9888 5.2756 2.4651 39 1 8.4045 5.8069 -0.2457 40 1 9.0569 8.0327 -1.0683 41 1 8.5482 13.6682 -1.7267 42 1 5.9493 9.8004 1.2779 43 1 5.2976 7.5692 2.0863 44 1 3.8611 4.6129 -1.1674 45 1 3.9992 3.1334 -2.1522 46 1 1.6079 4.0053 -0.4645 47 1 1.6787 3.8821 -2.2392 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069316531.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:57 Heat of formation + Delta-G solvation = -73.060069 kcal Electronic energy + Delta-G solvation = -28056.545835 eV Core-core repulsion = 24012.349890 eV Total energy + Delta-G solvation = -4044.195945 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.70841 -39.27971 -38.76681 -36.91417 -35.12138 -34.57026 -34.18025 -32.39587 -30.56180 -30.31021 -29.90756 -27.89579 -25.89279 -24.94491 -24.22542 -22.99332 -22.08458 -21.38679 -20.69522 -19.90169 -18.50987 -18.09535 -17.13099 -16.99819 -16.38446 -16.06451 -15.47793 -15.25650 -14.79550 -14.72407 -14.59431 -14.51106 -14.13309 -13.91676 -13.82174 -13.72048 -13.58141 -13.38029 -12.82019 -12.74033 -12.39873 -12.25669 -12.12921 -11.82516 -11.71144 -11.45834 -11.40200 -11.35649 -10.97841 -10.91895 -10.82041 -10.72204 -10.52869 -10.43466 -10.14341 -9.46280 -9.12193 -8.93781 -8.60862 -8.31947 -7.36666 -6.55631 -4.14652 1.96510 2.09735 2.56530 3.07104 3.07529 3.10883 3.11521 3.34161 3.83276 3.88192 4.28220 4.47957 4.51125 4.62454 4.67667 4.74867 4.85878 4.95036 4.99131 5.12888 5.18022 5.20814 5.26609 5.30023 5.39569 5.40976 5.45388 5.58770 5.60539 5.63752 5.76517 5.78855 5.87502 5.95257 6.08671 6.15073 6.32129 6.52035 6.57573 6.74703 6.77871 6.79748 6.93833 7.11842 7.24425 7.32038 7.68002 7.87119 7.88861 8.51257 8.89489 9.57334 10.61685 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019077 B = 0.002057 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.398869 B =13610.982145 C =14398.663553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C 0.077 3.923 4 H 0.064 0.936 5 C 0.102 3.898 6 N -0.637 5.637 7 C 0.707 3.293 8 O -0.593 6.593 9 N -0.737 5.737 10 C 0.197 3.803 11 C -0.215 4.215 12 C -0.053 4.053 13 C -0.196 4.196 14 C 0.161 3.839 15 O -0.173 6.173 16 C -0.394 4.394 17 H 0.093 0.907 18 C 0.041 3.959 19 N -0.859 5.859 20 Si 0.942 3.058 21 H -0.269 1.269 22 H -0.277 1.277 23 H -0.269 1.269 24 C -0.237 4.237 25 C -0.050 4.050 26 C 0.076 3.924 27 C 0.050 3.950 28 O -0.375 6.375 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.102 0.898 36 H 0.396 0.604 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.112 0.888 40 H 0.118 0.882 41 H 0.272 0.728 42 H 0.128 0.872 43 H 0.108 0.892 44 H 0.090 0.910 45 H 0.078 0.922 46 H 0.056 0.944 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.933 -20.020 0.255 23.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C 0.018 3.982 4 H 0.082 0.918 5 C -0.022 4.022 6 N -0.376 5.376 7 C 0.408 3.592 8 O -0.472 6.472 9 N -0.394 5.394 10 C 0.074 3.926 11 C -0.217 4.217 12 C -0.072 4.072 13 C -0.215 4.215 14 C 0.106 3.894 15 O -0.075 6.075 16 C -0.470 4.470 17 H 0.110 0.890 18 C -0.165 4.165 19 N -0.493 5.493 20 Si 0.767 3.233 21 H -0.194 1.194 22 H -0.202 1.202 23 H -0.194 1.194 24 C -0.257 4.257 25 C -0.069 4.069 26 C -0.048 4.048 27 C -0.028 4.028 28 O -0.293 6.293 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.120 0.880 36 H 0.233 0.767 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.130 0.870 40 H 0.136 0.864 41 H 0.082 0.918 42 H 0.146 0.854 43 H 0.126 0.874 44 H 0.108 0.892 45 H 0.096 0.904 46 H 0.074 0.926 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -12.448 -20.231 0.600 23.762 hybrid contribution -0.493 1.320 0.018 1.409 sum -12.941 -18.912 0.618 22.924 Atomic orbital electron populations 1.21701 0.94936 1.01644 1.02350 1.21506 0.96986 0.93668 1.03096 1.22671 0.93390 0.94707 0.87446 0.91836 1.22245 0.93821 0.81998 1.04099 1.47289 1.49605 1.14980 1.25708 1.15892 0.78905 0.81609 0.82756 1.90896 1.65049 1.64402 1.26830 1.45682 1.45182 1.17068 1.31436 1.19854 0.89889 0.90850 0.92002 1.19213 1.02182 0.93414 1.06883 1.20538 0.95489 0.95971 0.95233 1.20219 1.04357 0.90481 1.06429 1.19442 0.91843 0.86705 0.91426 1.83979 1.48126 1.11309 1.64086 1.21306 1.12503 0.85244 1.27962 0.88969 1.25321 0.97250 0.98057 0.95828 1.70029 1.27403 1.23654 1.28194 0.85762 0.79345 0.79253 0.78985 1.19415 1.20192 1.19430 1.21155 1.02311 0.97840 1.04359 1.20645 0.97285 0.91790 0.97161 1.22346 0.95779 0.97615 0.89077 1.22947 0.93331 0.83402 1.03128 1.87950 1.79688 1.23529 1.38161 0.92897 0.91895 0.92612 0.90813 0.90224 0.90993 0.87989 0.76735 0.91735 0.91674 0.86958 0.86359 0.91803 0.85412 0.87404 0.89210 0.90364 0.92573 0.87437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.81 37.16 0.36 -0.59 16 2 C -0.11 -0.76 5.65 -26.73 -0.15 -0.91 16 3 C 0.08 0.65 2.79 -26.36 -0.07 0.58 16 4 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 5 C 0.10 0.99 5.97 -3.32 -0.02 0.97 16 6 N -0.64 -7.02 3.01 -177.74 -0.54 -7.56 16 7 C 0.71 9.91 8.31 -86.92 -0.72 9.19 16 8 O -0.59 -10.37 15.82 5.29 0.08 -10.28 16 9 N -0.74 -9.54 5.46 -66.41 -0.36 -9.90 16 10 C 0.20 2.79 5.80 -5.19 -0.03 2.76 16 11 C -0.22 -3.41 5.25 -104.57 -0.55 -3.96 16 12 C -0.05 -0.89 9.69 -39.61 -0.38 -1.27 16 13 C -0.20 -3.88 9.99 -39.39 -0.39 -4.27 16 14 C 0.16 3.67 6.65 -39.11 -0.26 3.41 16 15 O -0.17 -4.73 9.76 0.04 0.00 -4.73 16 16 C -0.39 -10.59 9.49 30.89 0.29 -10.30 16 17 H 0.09 2.27 5.20 -52.48 -0.27 2.00 16 18 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 19 N -0.86 -24.42 13.67 55.48 0.76 -23.66 16 20 Si 0.94 19.80 29.55 -169.99 -5.02 14.78 16 21 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 22 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 23 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 24 C -0.24 -4.83 9.17 -39.40 -0.36 -5.20 16 25 C -0.05 -0.85 9.69 -39.61 -0.38 -1.24 16 26 C 0.08 0.63 6.57 -3.53 -0.02 0.61 16 27 C 0.05 0.38 6.98 37.31 0.26 0.64 16 28 O -0.37 -3.44 9.92 -35.23 -0.35 -3.78 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.46 7.83 -51.93 -0.41 0.05 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.10 1.10 7.06 -51.93 -0.37 0.73 16 36 H 0.40 4.54 6.02 -40.82 -0.25 4.30 16 37 H 0.06 0.92 8.08 -51.93 -0.42 0.50 16 38 H 0.06 0.95 8.08 -51.93 -0.42 0.53 16 39 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 40 H 0.12 2.28 8.06 -52.49 -0.42 1.85 16 41 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 42 H 0.13 2.62 5.64 -52.49 -0.30 2.32 16 43 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 44 H 0.09 0.69 5.78 -51.93 -0.30 0.39 16 45 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 385.28 15.07 5.81 5.81 Total: -1.00 -31.86 385.28 -9.09 -40.95 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -6.94 Total: 6.97 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: -2.53 Total: -8.59 kcal Atomic # 7 Polarization: -40.98 SS G_CDS: -0.14 Total: -41.12 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: -0.27 Total: -18.80 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.86 -9.09 -40.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069316531.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.110 kcal (2) G-P(sol) polarization free energy of solvation -31.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds