Wall clock time and date at job start Tue Mar 31 2020 17:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47215 * 2 1 4 4 H 1.08997 * 109.51447 * 55.09556 * 3 2 1 5 5 C 1.53712 * 109.48540 * 175.36516 * 3 2 1 6 6 N 1.47152 * 108.16277 * 172.39749 * 5 3 2 7 7 C 1.34772 * 120.98212 * 129.42608 * 6 5 3 8 8 O 1.21587 * 120.00308 * 354.38353 * 7 6 5 9 9 N 1.34783 * 119.99925 * 174.38185 * 7 6 5 10 10 C 1.46495 * 119.99962 * 184.96591 * 9 7 6 11 11 C 1.50706 * 109.47119 * 180.02562 * 10 9 7 12 12 C 1.38300 * 119.92666 * 269.72969 * 11 10 9 13 13 C 1.38101 * 120.06593 * 179.72863 * 12 11 10 14 14 C 1.38882 * 119.92679 * 0.53897 * 13 12 11 15 15 O 1.35759 * 120.06617 * 179.75450 * 14 13 12 16 16 C 1.34824 * 117.00135 * 174.62835 * 15 14 13 17 17 H 1.08007 * 119.99482 * 5.03259 * 16 15 14 18 18 C 1.38652 * 120.00412 * 185.03696 * 16 15 14 19 19 N 1.31558 * 119.99460 * 359.97438 * 18 16 15 20 20 Si 1.86791 * 120.00082 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47600 * 59.99914 * 20 18 16 22 22 H 1.48508 * 109.47012 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47212 * 299.99523 * 20 18 16 24 24 C 1.38875 * 119.86379 * 359.73326 * 14 13 12 25 25 C 1.38093 * 119.93108 * 359.97438 * 24 14 13 26 26 C 1.47154 * 118.03505 * 309.15760 * 6 5 3 27 27 C 1.53295 * 108.38301 * 50.78338 * 26 6 5 28 28 O 1.42960 * 109.22346 * 307.69843 * 27 26 6 29 29 H 1.09002 * 109.46874 * 300.00166 * 1 2 3 30 30 H 1.09006 * 109.46968 * 59.99998 * 1 2 3 31 31 H 1.08994 * 109.46812 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47288 * 240.00091 * 2 1 3 33 33 H 1.08999 * 109.47548 * 119.99698 * 2 1 3 34 34 H 1.08998 * 109.84152 * 52.71676 * 5 3 2 35 35 H 1.09006 * 109.74210 * 292.02253 * 5 3 2 36 36 H 0.96998 * 119.99873 * 4.96599 * 9 7 6 37 37 H 1.08996 * 109.47122 * 59.99894 * 10 9 7 38 38 H 1.09007 * 109.47423 * 300.00075 * 10 9 7 39 39 H 1.07998 * 119.96962 * 359.97438 * 12 11 10 40 40 H 1.07999 * 120.03773 * 180.27430 * 13 12 11 41 41 H 0.97004 * 119.99318 * 180.02562 * 19 18 16 42 42 H 1.07999 * 120.03060 * 179.97438 * 24 14 13 43 43 H 1.08003 * 119.96444 * 179.97438 * 25 24 14 44 44 H 1.08996 * 109.68020 * 170.50991 * 26 6 5 45 45 H 1.09000 * 109.67671 * 291.06569 * 26 6 5 46 46 H 1.08994 * 109.51661 * 67.62697 * 27 26 6 47 47 H 1.09006 * 109.51142 * 187.72826 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6072 1.9818 0.8425 5 6 3.5727 1.4445 0.1171 6 7 4.0453 2.8255 -0.0697 7 6 4.8935 3.3935 0.8102 8 8 5.1995 2.8026 1.8278 9 7 5.4026 4.6166 0.5621 10 6 6.4071 5.1882 1.4622 11 6 6.8083 6.5532 0.9652 12 6 7.8666 6.6832 0.0845 13 6 8.2332 7.9321 -0.3772 14 6 7.5448 9.0592 0.0527 15 8 7.9059 10.2888 -0.3954 16 6 7.1284 11.3270 -0.0276 17 1 6.3113 11.1721 0.6614 18 6 7.3778 12.5935 -0.5339 19 7 8.3735 12.7821 -1.3728 20 14 6.3010 14.0320 -0.0237 21 1 6.3802 14.2121 1.4483 22 1 6.7729 15.2675 -0.6991 23 1 4.8943 13.7602 -0.4142 24 6 6.4861 8.9258 0.9415 25 6 6.1206 7.6736 1.3948 26 6 3.5690 3.5659 -1.2489 27 6 2.0408 3.4587 -1.3023 28 8 1.6623 2.0825 -1.2213 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 4.0032 0.8021 -0.6511 35 1 3.8671 1.0860 1.1035 36 1 5.1038 5.1183 -0.2124 37 1 7.2823 4.5392 1.4890 38 1 5.9888 5.2756 2.4651 39 1 8.4045 5.8069 -0.2457 40 1 9.0569 8.0327 -1.0683 41 1 8.5482 13.6682 -1.7267 42 1 5.9493 9.8004 1.2779 43 1 5.2976 7.5692 2.0863 44 1 3.8611 4.6129 -1.1674 45 1 3.9992 3.1334 -2.1522 46 1 1.6079 4.0053 -0.4645 47 1 1.6787 3.8821 -2.2392 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069316531.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:56 Heat of formation + Delta-G solvation = -93.347148 kcal Electronic energy + Delta-G solvation = -28057.425549 eV Core-core repulsion = 24012.349890 eV Total energy + Delta-G solvation = -4045.075659 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.64805 -40.82102 -39.74250 -38.50304 -36.03810 -35.68693 -34.89639 -34.26780 -31.86117 -31.55268 -30.94089 -28.80160 -27.58145 -26.22237 -25.06839 -23.76894 -23.65217 -22.20606 -22.02372 -20.88824 -19.88740 -19.44843 -18.80472 -17.82283 -17.30016 -16.98767 -16.56464 -16.41786 -16.12449 -15.94996 -15.81294 -15.62294 -15.44364 -15.20441 -15.02147 -14.67237 -14.58023 -14.38561 -14.20237 -14.07978 -13.66222 -13.30540 -13.12096 -13.00987 -12.83825 -12.52843 -12.46755 -12.39218 -12.23213 -12.14867 -12.03334 -11.88191 -11.67896 -11.27757 -11.21087 -11.10071 -10.80163 -10.22621 -9.82338 -9.47312 -9.03168 -8.48305 -6.16584 0.50674 0.56889 1.35988 1.44526 1.51665 1.58561 2.04104 2.17130 2.70655 2.73094 2.96383 3.20119 3.47726 3.62056 3.82141 3.89703 3.95243 4.02087 4.03161 4.12741 4.16851 4.26477 4.38073 4.45130 4.53807 4.56327 4.60382 4.69358 4.73821 4.75614 4.80118 4.86118 4.97546 5.03179 5.12399 5.13821 5.23250 5.25595 5.32135 5.42995 5.44627 5.51569 5.68259 5.74435 5.82818 6.00988 6.14787 6.14868 6.86003 6.96370 7.45214 7.75240 8.74079 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019077 B = 0.002057 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.398869 B =13610.982145 C =14398.663553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.113 4.113 3 C 0.081 3.919 4 H 0.054 0.946 5 C 0.100 3.900 6 N -0.634 5.634 7 C 0.704 3.296 8 O -0.631 6.631 9 N -0.730 5.730 10 C 0.203 3.797 11 C -0.183 4.183 12 C -0.042 4.042 13 C -0.204 4.204 14 C 0.124 3.876 15 O -0.228 6.228 16 C -0.414 4.414 17 H 0.104 0.896 18 C -0.021 4.021 19 N -0.918 5.918 20 Si 1.017 2.983 21 H -0.258 1.258 22 H -0.273 1.273 23 H -0.256 1.256 24 C -0.243 4.243 25 C -0.045 4.045 26 C 0.073 3.927 27 C 0.048 3.952 28 O -0.384 6.384 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.405 0.595 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.147 0.853 40 H 0.116 0.884 41 H 0.273 0.727 42 H 0.121 0.879 43 H 0.138 0.862 44 H 0.098 0.902 45 H 0.089 0.911 46 H 0.052 0.948 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.879 -22.092 0.760 26.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.150 4.150 3 C 0.023 3.977 4 H 0.072 0.928 5 C -0.023 4.023 6 N -0.372 5.372 7 C 0.406 3.594 8 O -0.512 6.512 9 N -0.388 5.388 10 C 0.080 3.920 11 C -0.184 4.184 12 C -0.060 4.060 13 C -0.223 4.223 14 C 0.073 3.927 15 O -0.134 6.134 16 C -0.490 4.490 17 H 0.121 0.879 18 C -0.219 4.219 19 N -0.556 5.556 20 Si 0.836 3.164 21 H -0.183 1.183 22 H -0.198 1.198 23 H -0.180 1.180 24 C -0.262 4.262 25 C -0.063 4.063 26 C -0.050 4.050 27 C -0.029 4.029 28 O -0.302 6.302 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.108 0.892 34 H 0.101 0.899 35 H 0.107 0.893 36 H 0.243 0.757 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.164 0.836 40 H 0.134 0.866 41 H 0.082 0.918 42 H 0.139 0.861 43 H 0.156 0.844 44 H 0.116 0.884 45 H 0.108 0.892 46 H 0.070 0.930 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -14.434 -22.362 1.092 26.638 hybrid contribution 0.061 1.545 -0.077 1.548 sum -14.373 -20.817 1.015 25.317 Atomic orbital electron populations 1.21679 0.94702 1.02260 1.01775 1.21531 0.97127 0.92536 1.03836 1.22651 0.92389 0.95674 0.87017 0.92812 1.22343 0.94715 0.81463 1.03758 1.47369 1.48613 1.15498 1.25746 1.15983 0.79181 0.81540 0.82701 1.90875 1.66493 1.65308 1.28560 1.45427 1.44872 1.16991 1.31486 1.19744 0.90574 0.89506 0.92205 1.19464 1.00414 0.94117 1.04387 1.20870 0.95317 0.95628 0.94234 1.20448 1.04239 0.90982 1.06655 1.19992 0.93617 0.86333 0.92791 1.83950 1.49993 1.12793 1.66688 1.21786 1.12964 0.85856 1.28378 0.87889 1.26575 0.98712 1.00907 0.95747 1.70176 1.30165 1.24360 1.30850 0.84665 0.77623 0.75113 0.78964 1.18271 1.19791 1.18028 1.21237 1.01725 0.99157 1.04125 1.20926 0.97837 0.90579 0.96961 1.22545 0.96285 0.97850 0.88291 1.23073 0.92775 0.82860 1.04180 1.87952 1.79765 1.24229 1.38302 0.93061 0.92847 0.91432 0.90407 0.89151 0.89939 0.89256 0.75693 0.91088 0.91441 0.83551 0.86618 0.91806 0.86117 0.84435 0.88388 0.89246 0.92955 0.85246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.81 71.98 0.71 -0.92 16 2 C -0.11 -1.28 5.65 30.60 0.17 -1.11 16 3 C 0.08 1.24 2.79 30.84 0.09 1.33 16 4 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 5 C 0.10 1.77 5.97 86.49 0.52 2.29 16 6 N -0.63 -12.55 3.01 -834.52 -2.52 -15.06 16 7 C 0.70 18.07 8.31 179.05 1.49 19.56 16 8 O -0.63 -20.95 15.82 -3.99 -0.06 -21.02 16 9 N -0.73 -16.54 5.46 -482.29 -2.63 -19.17 16 10 C 0.20 5.01 5.80 85.64 0.50 5.51 16 11 C -0.18 -5.18 5.25 -19.83 -0.10 -5.28 16 12 C -0.04 -1.28 9.69 22.25 0.22 -1.06 16 13 C -0.20 -8.04 9.99 22.39 0.22 -7.81 16 14 C 0.12 5.80 6.65 22.58 0.15 5.95 16 15 O -0.23 -13.19 9.76 -22.78 -0.22 -13.41 16 16 C -0.41 -23.20 9.49 67.92 0.64 -22.55 16 17 H 0.10 5.25 5.20 -2.91 -0.02 5.23 16 18 C -0.02 -1.18 5.49 84.83 0.47 -0.71 16 19 N -0.92 -54.91 13.67 21.61 0.30 -54.62 16 20 Si 1.02 41.44 29.55 68.60 2.03 43.47 16 21 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 22 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 23 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 24 C -0.24 -9.82 9.17 22.39 0.21 -9.62 16 25 C -0.04 -1.40 9.69 22.25 0.22 -1.18 16 26 C 0.07 1.02 6.57 86.35 0.57 1.58 16 27 C 0.05 0.62 6.98 72.08 0.50 1.13 16 28 O -0.38 -6.21 9.92 -148.98 -1.48 -7.68 16 29 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.05 0.69 7.83 -2.38 -0.02 0.68 16 31 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.09 0.83 8.14 -2.39 -0.02 0.82 16 34 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.09 1.83 7.06 -2.38 -0.02 1.81 16 36 H 0.41 7.85 6.02 -92.71 -0.56 7.29 16 37 H 0.07 1.75 8.08 -2.39 -0.02 1.73 16 38 H 0.07 1.72 8.08 -2.38 -0.02 1.70 16 39 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 40 H 0.12 4.54 8.06 -2.91 -0.02 4.52 16 41 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 42 H 0.12 4.99 5.64 -2.91 -0.02 4.97 16 43 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 44 H 0.10 1.19 5.78 -2.39 -0.01 1.18 16 45 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.13 1.10 8.14 -2.38 -0.02 1.08 16 Total: -1.00 -72.95 385.28 2.39 -70.56 By element: Atomic # 1 Polarization: 29.42 SS G_CDS: 0.43 Total: 29.85 kcal Atomic # 6 Polarization: -19.46 SS G_CDS: 6.55 Total: -12.91 kcal Atomic # 7 Polarization: -84.00 SS G_CDS: -4.85 Total: -88.85 kcal Atomic # 8 Polarization: -40.35 SS G_CDS: -1.76 Total: -42.11 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Total: -72.95 2.39 -70.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069316531.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.790 kcal (2) G-P(sol) polarization free energy of solvation -72.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds