Wall clock time and date at job start Tue Mar 31 2020 17:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47048 * 2 1 4 4 C 1.53004 * 109.46689 * 240.00244 * 2 1 3 5 5 O 1.45197 * 109.47443 * 120.00345 * 2 1 3 6 6 C 1.34633 * 117.00248 * 59.99655 * 5 2 1 7 7 O 1.21509 * 119.99936 * 0.02562 * 6 5 2 8 8 N 1.34772 * 120.00260 * 179.97438 * 6 5 2 9 9 C 1.46501 * 120.00556 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47644 * 180.02562 * 9 8 6 11 11 H 1.08993 * 109.46773 * 305.00159 * 10 9 8 12 12 C 1.50698 * 109.47004 * 184.99474 * 10 9 8 13 13 O 1.21293 * 120.00006 * 0.02562 * 12 10 9 14 14 N 1.34777 * 119.99538 * 179.97438 * 12 10 9 15 15 C 1.37104 * 119.99773 * 179.72591 * 14 12 10 16 16 H 1.08002 * 119.99671 * 0.27660 * 15 14 12 17 17 C 1.38950 * 120.00030 * 180.27703 * 15 14 12 18 18 N 1.31414 * 119.99926 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99969 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47234 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47403 * 120.00325 * 19 17 15 22 22 H 1.48503 * 109.47163 * 240.00122 * 19 17 15 23 23 C 1.50707 * 109.47007 * 64.99815 * 10 9 8 24 24 C 1.38233 * 120.00125 * 59.72685 * 23 10 9 25 25 C 1.38232 * 120.00010 * 179.78958 * 24 23 10 26 26 C 1.38241 * 119.99754 * 0.44124 * 25 24 23 27 27 C 1.38230 * 120.00207 * 359.81314 * 26 25 24 28 28 C 1.38236 * 119.99936 * 359.97438 * 27 26 25 29 29 H 1.09001 * 109.46903 * 299.99779 * 1 2 3 30 30 H 1.08999 * 109.47319 * 59.99789 * 1 2 3 31 31 H 1.08998 * 109.46822 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47175 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47233 * 300.00264 * 3 2 1 34 34 H 1.08993 * 109.47281 * 60.00617 * 3 2 1 35 35 H 1.08998 * 109.47200 * 299.99416 * 4 2 1 36 36 H 1.08999 * 109.47267 * 59.99935 * 4 2 1 37 37 H 1.09007 * 109.46983 * 179.97438 * 4 2 1 38 38 H 0.97002 * 120.00082 * 359.97438 * 8 6 5 39 39 H 1.09000 * 109.47042 * 59.99127 * 9 8 6 40 40 H 1.09003 * 109.46305 * 300.00079 * 9 8 6 41 41 H 0.97001 * 120.00485 * 0.02562 * 14 12 10 42 42 H 0.96999 * 119.99863 * 180.02562 * 18 17 15 43 43 H 1.07997 * 119.99901 * 359.97438 * 24 23 10 44 44 H 1.07998 * 120.00372 * 180.27357 * 25 24 23 45 45 H 1.08005 * 119.99819 * 179.83640 * 26 25 24 46 46 H 1.07997 * 120.00376 * 180.02562 * 27 26 25 47 47 H 1.07997 * 120.00406 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9516 -2.5097 0.5035 8 7 2.0682 -2.6657 2.4165 9 6 1.6751 -4.0672 2.5825 10 6 2.2751 -4.6152 3.8788 11 1 3.3546 -4.4646 3.8716 12 6 1.9740 -6.0877 3.9886 13 8 1.3420 -6.6442 3.1157 14 7 2.4078 -6.7864 5.0564 15 6 2.1290 -8.1249 5.1591 16 1 1.5656 -8.6202 4.3821 17 6 2.5713 -8.8440 6.2627 18 7 3.2565 -8.2411 7.2082 19 14 2.1921 -10.6677 6.4022 20 1 1.4134 -11.1037 5.2152 21 1 3.4624 -11.4339 6.4688 22 1 1.3994 -10.9157 7.6332 23 6 1.6747 -3.8906 5.0560 24 6 0.3098 -3.9325 5.2705 25 6 -0.2404 -3.2714 6.3527 26 6 0.5734 -2.5609 7.2152 27 6 1.9377 -2.5146 6.9977 28 6 2.4884 -3.1793 5.9180 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6767 1.9562 0.8900 35 1 1.6766 -1.7489 -1.2493 36 1 1.6765 -0.2074 -2.1393 37 1 3.1300 -0.7209 -1.2496 38 1 2.6285 -2.2371 3.0823 39 1 2.0413 -4.6499 1.7373 40 1 0.5882 -4.1366 2.6279 41 1 2.9136 -6.3415 5.7543 42 1 3.5655 -8.7432 7.9784 43 1 -0.3264 -4.4842 4.5943 44 1 -1.3063 -3.3078 6.5228 45 1 0.1432 -2.0422 8.0592 46 1 2.5735 -1.9599 7.6718 47 1 3.5542 -3.1429 5.7478 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079860805.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:37 Heat of formation + Delta-G solvation = -104.375805 kcal Electronic energy + Delta-G solvation = -29186.662973 eV Core-core repulsion = 25141.109075 eV Total energy + Delta-G solvation = -4045.553898 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.73279 -39.66575 -37.92407 -37.32955 -35.10761 -34.16299 -33.90534 -32.30954 -31.11189 -30.66962 -28.51023 -27.56458 -27.48958 -25.52306 -23.81813 -22.53284 -21.97144 -21.17153 -20.15863 -19.04843 -18.20914 -17.73409 -16.89130 -16.63298 -16.17775 -15.97062 -15.31329 -14.84931 -14.65906 -14.51023 -14.47012 -14.20875 -13.93662 -13.87509 -13.44978 -13.13306 -13.10094 -12.76671 -12.64040 -12.35863 -12.20969 -12.05687 -12.02180 -11.98118 -11.63172 -11.54002 -11.38674 -11.36064 -11.13706 -10.72531 -10.70714 -10.40883 -10.37616 -10.26969 -10.00504 -9.58831 -9.00727 -8.87392 -8.66272 -8.20516 -8.02921 -6.47457 -3.88179 1.56476 1.65507 2.22335 2.96274 3.12416 3.24481 3.31587 3.75252 3.99541 4.09393 4.22743 4.58530 4.62291 4.76907 4.80926 4.91030 5.12846 5.19141 5.22494 5.27022 5.29560 5.36598 5.38179 5.49667 5.52471 5.53104 5.61653 5.70918 5.73163 5.79884 5.81935 6.03866 6.10129 6.18251 6.20404 6.23344 6.25615 6.29770 6.47110 6.58293 6.67944 6.74376 6.86417 7.22502 7.50238 7.54156 7.98474 8.49133 8.51939 9.10190 9.46049 9.95403 10.69502 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014847 B = 0.003006 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.395388 B = 9313.174613 C =10498.208610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.136 3.864 3 C -0.140 4.140 4 C -0.184 4.184 5 O -0.368 6.368 6 C 0.649 3.351 7 O -0.567 6.567 8 N -0.706 5.706 9 C 0.166 3.834 10 C -0.074 4.074 11 H 0.097 0.903 12 C 0.449 3.551 13 O -0.590 6.590 14 N -0.548 5.548 15 C -0.301 4.301 16 H 0.105 0.895 17 C 0.025 3.975 18 N -0.895 5.895 19 Si 0.929 3.071 20 H -0.267 1.267 21 H -0.281 1.281 22 H -0.281 1.281 23 C -0.071 4.071 24 C -0.098 4.098 25 C -0.118 4.118 26 C -0.124 4.124 27 C -0.119 4.119 28 C -0.115 4.115 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.089 0.911 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.403 0.597 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.394 0.606 42 H 0.272 0.728 43 H 0.122 0.878 44 H 0.118 0.882 45 H 0.117 0.883 46 H 0.119 0.881 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.753 19.167 -5.511 19.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.197 4.197 4 C -0.241 4.241 5 O -0.283 6.283 6 C 0.402 3.598 7 O -0.456 6.456 8 N -0.365 5.365 9 C 0.044 3.956 10 C -0.096 4.096 11 H 0.115 0.885 12 C 0.234 3.766 13 O -0.475 6.475 14 N -0.182 5.182 15 C -0.431 4.431 16 H 0.123 0.877 17 C -0.177 4.177 18 N -0.535 5.535 19 Si 0.756 3.244 20 H -0.191 1.191 21 H -0.207 1.207 22 H -0.207 1.207 23 C -0.071 4.071 24 C -0.116 4.116 25 C -0.136 4.136 26 C -0.142 4.142 27 C -0.137 4.137 28 C -0.133 4.133 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.108 0.892 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.108 0.892 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.238 0.762 39 H 0.103 0.897 40 H 0.097 0.903 41 H 0.228 0.772 42 H 0.082 0.918 43 H 0.140 0.860 44 H 0.136 0.864 45 H 0.135 0.865 46 H 0.137 0.863 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.450 18.477 -6.378 19.600 hybrid contribution 0.440 -0.472 1.041 1.225 sum -1.010 18.004 -5.337 18.806 Atomic orbital electron populations 1.22518 0.94081 1.05244 1.02254 1.22014 0.94347 0.91399 0.82295 1.21850 1.02181 0.92713 1.02964 1.22523 1.01501 1.03727 0.96363 1.86286 1.71739 1.23950 1.46318 1.18023 0.79107 0.80314 0.82404 1.90907 1.41100 1.70331 1.43277 1.44796 1.55287 1.13040 1.23340 1.21077 1.00694 0.77213 0.96649 1.20444 1.01204 0.95338 0.92659 0.88471 1.19194 0.86106 0.86420 0.84883 1.90565 1.45014 1.70662 1.41308 1.41811 1.47742 1.09473 1.19144 1.19787 1.32996 0.83891 1.06394 0.87684 1.25289 0.96500 1.00642 0.95292 1.69628 1.36656 1.37217 1.10046 0.85805 0.78222 0.81914 0.78458 1.19109 1.20678 1.20694 1.19600 0.93899 0.97387 0.96231 1.21042 0.94716 0.98188 0.97635 1.21084 0.99713 0.97729 0.95047 1.21081 0.93983 0.99864 0.99309 1.21033 0.95100 0.99954 0.97577 1.21048 0.99407 0.97705 0.95151 0.92248 0.91325 0.89201 0.91536 0.90296 0.91536 0.89177 0.91326 0.92232 0.76235 0.89749 0.90298 0.77234 0.91805 0.85953 0.86361 0.86543 0.86295 0.86001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.98 8.37 37.16 0.31 -1.67 16 2 C 0.14 1.48 1.13 -90.62 -0.10 1.38 16 3 C -0.14 -1.09 8.85 37.16 0.33 -0.76 16 4 C -0.18 -1.97 8.37 37.16 0.31 -1.66 16 5 O -0.37 -4.84 9.94 -40.30 -0.40 -5.24 16 6 C 0.65 9.80 8.06 54.05 0.44 10.24 16 7 O -0.57 -9.91 11.88 -19.28 -0.23 -10.14 16 8 N -0.71 -9.88 5.35 -65.28 -0.35 -10.23 16 9 C 0.17 2.74 4.31 -4.04 -0.02 2.73 16 10 C -0.07 -1.25 2.42 -92.92 -0.22 -1.48 16 11 H 0.10 1.44 7.88 -51.93 -0.41 1.03 16 12 C 0.45 10.19 6.75 -10.99 -0.07 10.12 16 13 O -0.59 -15.44 15.50 5.55 0.09 -15.36 16 14 N -0.55 -13.50 5.19 -10.96 -0.06 -13.56 16 15 C -0.30 -8.21 9.68 -14.93 -0.14 -8.36 16 16 H 0.11 3.01 7.16 -52.49 -0.38 2.63 16 17 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 18 N -0.89 -23.92 13.05 55.50 0.72 -23.19 16 19 Si 0.93 20.74 29.55 -169.99 -5.02 15.72 16 20 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 21 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 22 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 23 C -0.07 -1.11 4.10 -104.62 -0.43 -1.54 16 24 C -0.10 -1.60 8.76 -39.59 -0.35 -1.95 16 25 C -0.12 -1.69 10.05 -39.58 -0.40 -2.09 16 26 C -0.12 -1.62 10.05 -39.58 -0.40 -2.02 16 27 C -0.12 -1.52 10.05 -39.59 -0.40 -1.92 16 28 C -0.12 -1.58 9.67 -39.58 -0.38 -1.96 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.09 1.21 5.88 -51.93 -0.31 0.91 16 32 H 0.07 0.50 8.14 -51.92 -0.42 0.07 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.09 1.21 5.88 -51.93 -0.31 0.91 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 38 H 0.40 4.79 8.34 -40.82 -0.34 4.45 16 39 H 0.08 1.54 7.95 -51.93 -0.41 1.12 16 40 H 0.08 1.42 7.21 -51.93 -0.37 1.05 16 41 H 0.39 9.46 7.78 -40.82 -0.32 9.15 16 42 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 43 H 0.12 2.13 7.53 -52.49 -0.40 1.73 16 44 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 45 H 0.12 1.23 8.06 -52.48 -0.42 0.80 16 46 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 47 H 0.12 1.42 7.95 -52.49 -0.42 1.00 16 LS Contribution 390.92 15.07 5.89 5.89 Total: -1.00 -31.55 390.92 -8.00 -39.54 By element: Atomic # 1 Polarization: 23.94 SS G_CDS: -7.02 Total: 16.92 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -1.62 Total: -0.36 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: 0.32 Total: -46.98 kcal Atomic # 8 Polarization: -30.18 SS G_CDS: -0.54 Total: -30.73 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.55 -8.00 -39.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079860805.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.832 kcal (2) G-P(sol) polarization free energy of solvation -31.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds