Wall clock time and date at job start Tue Mar 31 2020 17:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47048 * 2 1 4 4 C 1.53004 * 109.46689 * 240.00244 * 2 1 3 5 5 O 1.45197 * 109.47443 * 120.00345 * 2 1 3 6 6 C 1.34633 * 117.00248 * 59.99655 * 5 2 1 7 7 O 1.21509 * 119.99936 * 0.02562 * 6 5 2 8 8 N 1.34772 * 120.00260 * 179.97438 * 6 5 2 9 9 C 1.46501 * 120.00556 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47644 * 180.02562 * 9 8 6 11 11 H 1.08993 * 109.46773 * 305.00159 * 10 9 8 12 12 C 1.50698 * 109.47004 * 184.99474 * 10 9 8 13 13 O 1.21293 * 120.00006 * 0.02562 * 12 10 9 14 14 N 1.34777 * 119.99538 * 179.97438 * 12 10 9 15 15 C 1.37104 * 119.99773 * 179.72591 * 14 12 10 16 16 H 1.08002 * 119.99671 * 0.27660 * 15 14 12 17 17 C 1.38950 * 120.00030 * 180.27703 * 15 14 12 18 18 N 1.31414 * 119.99926 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99969 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47234 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47403 * 120.00325 * 19 17 15 22 22 H 1.48503 * 109.47163 * 240.00122 * 19 17 15 23 23 C 1.50707 * 109.47007 * 64.99815 * 10 9 8 24 24 C 1.38233 * 120.00125 * 59.72685 * 23 10 9 25 25 C 1.38232 * 120.00010 * 179.78958 * 24 23 10 26 26 C 1.38241 * 119.99754 * 0.44124 * 25 24 23 27 27 C 1.38230 * 120.00207 * 359.81314 * 26 25 24 28 28 C 1.38236 * 119.99936 * 359.97438 * 27 26 25 29 29 H 1.09001 * 109.46903 * 299.99779 * 1 2 3 30 30 H 1.08999 * 109.47319 * 59.99789 * 1 2 3 31 31 H 1.08998 * 109.46822 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47175 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47233 * 300.00264 * 3 2 1 34 34 H 1.08993 * 109.47281 * 60.00617 * 3 2 1 35 35 H 1.08998 * 109.47200 * 299.99416 * 4 2 1 36 36 H 1.08999 * 109.47267 * 59.99935 * 4 2 1 37 37 H 1.09007 * 109.46983 * 179.97438 * 4 2 1 38 38 H 0.97002 * 120.00082 * 359.97438 * 8 6 5 39 39 H 1.09000 * 109.47042 * 59.99127 * 9 8 6 40 40 H 1.09003 * 109.46305 * 300.00079 * 9 8 6 41 41 H 0.97001 * 120.00485 * 0.02562 * 14 12 10 42 42 H 0.96999 * 119.99863 * 180.02562 * 18 17 15 43 43 H 1.07997 * 119.99901 * 359.97438 * 24 23 10 44 44 H 1.07998 * 120.00372 * 180.27357 * 25 24 23 45 45 H 1.08005 * 119.99819 * 179.83640 * 26 25 24 46 46 H 1.07997 * 120.00376 * 180.02562 * 27 26 25 47 47 H 1.07997 * 120.00406 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9516 -2.5097 0.5035 8 7 2.0682 -2.6657 2.4165 9 6 1.6751 -4.0672 2.5825 10 6 2.2751 -4.6152 3.8788 11 1 3.3546 -4.4646 3.8716 12 6 1.9740 -6.0877 3.9886 13 8 1.3420 -6.6442 3.1157 14 7 2.4078 -6.7864 5.0564 15 6 2.1290 -8.1249 5.1591 16 1 1.5656 -8.6202 4.3821 17 6 2.5713 -8.8440 6.2627 18 7 3.2565 -8.2411 7.2082 19 14 2.1921 -10.6677 6.4022 20 1 1.4134 -11.1037 5.2152 21 1 3.4624 -11.4339 6.4688 22 1 1.3994 -10.9157 7.6332 23 6 1.6747 -3.8906 5.0560 24 6 0.3098 -3.9325 5.2705 25 6 -0.2404 -3.2714 6.3527 26 6 0.5734 -2.5609 7.2152 27 6 1.9377 -2.5146 6.9977 28 6 2.4884 -3.1793 5.9180 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6767 1.9562 0.8900 35 1 1.6766 -1.7489 -1.2493 36 1 1.6765 -0.2074 -2.1393 37 1 3.1300 -0.7209 -1.2496 38 1 2.6285 -2.2371 3.0823 39 1 2.0413 -4.6499 1.7373 40 1 0.5882 -4.1366 2.6279 41 1 2.9136 -6.3415 5.7543 42 1 3.5655 -8.7432 7.9784 43 1 -0.3264 -4.4842 4.5943 44 1 -1.3063 -3.3078 6.5228 45 1 0.1432 -2.0422 8.0592 46 1 2.5735 -1.9599 7.6718 47 1 3.5542 -3.1429 5.7478 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079860805.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:36 Heat of formation + Delta-G solvation = -124.918995 kcal Electronic energy + Delta-G solvation = -29187.553793 eV Core-core repulsion = 25141.109075 eV Total energy + Delta-G solvation = -4046.444717 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.88604 -41.05444 -39.45191 -38.47029 -36.50152 -35.93181 -35.04757 -33.71021 -32.94616 -31.76595 -29.76938 -28.34497 -28.26362 -27.36486 -25.29155 -23.66734 -23.08320 -22.55009 -21.30643 -20.61308 -19.93231 -19.14968 -18.23556 -17.81416 -17.39818 -17.20951 -16.64365 -16.50295 -16.00137 -15.81524 -15.65898 -15.44826 -15.31639 -15.18826 -14.67507 -14.46591 -14.37110 -14.17561 -13.59021 -13.53688 -13.34651 -13.29364 -13.06321 -12.97280 -12.88875 -12.84128 -12.76617 -12.44309 -12.41280 -12.30822 -12.13267 -11.89940 -11.84577 -11.54733 -11.37646 -11.14195 -10.57304 -10.28567 -10.04022 -9.76857 -9.55843 -8.48787 -5.97302 0.43317 0.54856 1.09416 1.34479 1.41428 1.55119 1.75394 1.95896 2.28128 2.84539 3.00048 3.16160 3.34336 3.68894 3.77151 3.78483 3.82324 3.91655 3.97355 4.18522 4.23379 4.33282 4.40492 4.51752 4.59224 4.63529 4.65770 4.71741 4.78461 4.78707 4.85342 4.90777 4.91016 5.07327 5.10720 5.18883 5.23060 5.30849 5.37742 5.40196 5.56584 5.59735 5.65541 5.69352 5.95820 6.14754 6.39093 6.54023 7.08319 7.33439 7.50104 8.03985 8.68128 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014847 B = 0.003006 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.395388 B = 9313.174613 C =10498.208610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.123 3.877 3 C -0.133 4.133 4 C -0.181 4.181 5 O -0.365 6.365 6 C 0.648 3.352 7 O -0.595 6.595 8 N -0.692 5.692 9 C 0.182 3.818 10 C -0.056 4.056 11 H 0.126 0.874 12 C 0.451 3.549 13 O -0.631 6.631 14 N -0.555 5.555 15 C -0.335 4.335 16 H 0.079 0.921 17 C -0.008 4.008 18 N -0.913 5.913 19 Si 0.990 3.010 20 H -0.274 1.274 21 H -0.269 1.269 22 H -0.271 1.271 23 C -0.086 4.086 24 C -0.124 4.124 25 C -0.128 4.128 26 C -0.121 4.121 27 C -0.116 4.116 28 C -0.115 4.115 29 H 0.062 0.938 30 H 0.093 0.907 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.103 0.897 34 H 0.070 0.930 35 H 0.056 0.944 36 H 0.093 0.907 37 H 0.063 0.937 38 H 0.417 0.583 39 H 0.063 0.937 40 H 0.056 0.944 41 H 0.397 0.603 42 H 0.279 0.721 43 H 0.095 0.905 44 H 0.131 0.869 45 H 0.147 0.853 46 H 0.153 0.847 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.453 21.623 -4.132 22.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.087 3.913 3 C -0.190 4.190 4 C -0.238 4.238 5 O -0.279 6.279 6 C 0.401 3.599 7 O -0.486 6.486 8 N -0.353 5.353 9 C 0.058 3.942 10 C -0.078 4.078 11 H 0.144 0.856 12 C 0.237 3.763 13 O -0.519 6.519 14 N -0.189 5.189 15 C -0.464 4.464 16 H 0.097 0.903 17 C -0.208 4.208 18 N -0.553 5.553 19 Si 0.814 3.186 20 H -0.199 1.199 21 H -0.194 1.194 22 H -0.196 1.196 23 C -0.086 4.086 24 C -0.143 4.143 25 C -0.146 4.146 26 C -0.139 4.139 27 C -0.134 4.134 28 C -0.132 4.132 29 H 0.081 0.919 30 H 0.112 0.888 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.122 0.878 34 H 0.089 0.911 35 H 0.075 0.925 36 H 0.111 0.889 37 H 0.082 0.918 38 H 0.254 0.746 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.232 0.768 42 H 0.088 0.912 43 H 0.113 0.887 44 H 0.149 0.851 45 H 0.165 0.835 46 H 0.170 0.830 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -0.217 20.980 -4.976 21.563 hybrid contribution 0.014 -1.134 0.579 1.273 sum -0.203 19.846 -4.397 20.328 Atomic orbital electron populations 1.22481 0.94225 1.03436 1.03665 1.22460 0.94516 0.92924 0.81436 1.21875 1.02528 0.90192 1.04418 1.22486 1.01746 1.02067 0.97526 1.86306 1.71557 1.22514 1.47558 1.18143 0.78709 0.80975 0.82084 1.90910 1.42263 1.71129 1.44288 1.44487 1.55248 1.11924 1.23594 1.20656 0.99198 0.78487 0.95828 1.20218 1.02903 0.91123 0.93572 0.85647 1.20124 0.84144 0.88639 0.83383 1.90534 1.46373 1.72420 1.42574 1.41799 1.48358 1.08917 1.19840 1.19710 1.34497 0.85421 1.06785 0.90271 1.26007 0.95897 1.04401 0.94519 1.69675 1.36696 1.38634 1.10279 0.84916 0.78373 0.77111 0.78235 1.19885 1.19409 1.19644 1.19476 0.93860 0.98784 0.96489 1.21025 0.95112 0.99541 0.98603 1.21313 1.00865 0.97745 0.94702 1.21486 0.94198 0.98814 0.99395 1.21473 0.95458 0.99169 0.97308 1.21353 1.00462 0.96792 0.94633 0.91913 0.88840 0.92528 0.91004 0.87816 0.91097 0.92486 0.88871 0.91755 0.74639 0.91902 0.92582 0.76844 0.91189 0.88696 0.85076 0.83521 0.82955 0.83461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.77 8.37 71.98 0.60 -3.16 16 2 C 0.12 2.51 1.13 -10.79 -0.01 2.50 16 3 C -0.13 -1.69 8.85 71.98 0.64 -1.05 16 4 C -0.18 -3.73 8.37 71.98 0.60 -3.13 16 5 O -0.36 -9.32 9.94 -55.42 -0.55 -9.87 16 6 C 0.65 19.94 8.06 129.79 1.05 20.99 16 7 O -0.59 -21.90 11.88 19.81 0.24 -21.66 16 8 N -0.69 -19.58 5.35 -590.86 -3.16 -22.74 16 9 C 0.18 6.34 4.31 86.38 0.37 6.71 16 10 C -0.06 -1.94 2.42 -12.28 -0.03 -1.97 16 11 H 0.13 3.59 7.88 -2.39 -0.02 3.57 16 12 C 0.45 21.36 6.75 87.66 0.59 21.95 16 13 O -0.63 -35.15 15.50 -3.07 -0.05 -35.19 16 14 N -0.55 -28.19 5.19 -306.98 -1.59 -29.78 16 15 C -0.33 -18.88 9.68 84.04 0.81 -18.07 16 16 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 17 C -0.01 -0.40 5.50 84.93 0.47 0.07 16 18 N -0.91 -48.44 13.05 21.66 0.28 -48.15 16 19 Si 0.99 42.70 29.55 68.60 2.03 44.73 16 20 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 21 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 22 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 23 C -0.09 -2.67 4.10 -19.86 -0.08 -2.75 16 24 C -0.12 -4.19 8.76 22.27 0.20 -4.00 16 25 C -0.13 -3.60 10.05 22.27 0.22 -3.37 16 26 C -0.12 -2.81 10.05 22.27 0.22 -2.59 16 27 C -0.12 -2.57 10.05 22.27 0.22 -2.35 16 28 C -0.11 -2.86 9.67 22.27 0.22 -2.65 16 29 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.06 1.58 5.88 -2.39 -0.01 1.57 16 32 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 33 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.06 1.58 5.88 -2.39 -0.01 1.57 16 36 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 38 H 0.42 9.44 8.34 -92.71 -0.77 8.67 16 39 H 0.06 2.45 7.95 -2.39 -0.02 2.43 16 40 H 0.06 2.21 7.21 -2.39 -0.02 2.19 16 41 H 0.40 19.33 7.78 -92.71 -0.72 18.61 16 42 H 0.28 13.79 8.31 -92.71 -0.77 13.02 16 43 H 0.09 3.62 7.53 -2.91 -0.02 3.59 16 44 H 0.13 3.18 8.06 -2.91 -0.02 3.16 16 45 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 46 H 0.15 2.38 8.06 -2.91 -0.02 2.35 16 47 H 0.15 2.88 7.95 -2.91 -0.02 2.86 16 Total: -1.00 -71.99 390.92 2.78 -69.21 By element: Atomic # 1 Polarization: 46.86 SS G_CDS: -0.50 Total: 46.36 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: 6.09 Total: 7.12 kcal Atomic # 7 Polarization: -96.21 SS G_CDS: -4.47 Total: -100.68 kcal Atomic # 8 Polarization: -66.37 SS G_CDS: -0.36 Total: -66.73 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -71.99 2.78 -69.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079860805.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.711 kcal (2) G-P(sol) polarization free energy of solvation -71.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds