Wall clock time and date at job start Tue Mar 31 2020 17:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47103 * 2 1 4 4 C 1.53002 * 109.47497 * 240.00350 * 2 1 3 5 5 O 1.45195 * 109.47224 * 120.00099 * 2 1 3 6 6 C 1.34638 * 117.00135 * 60.00489 * 5 2 1 7 7 O 1.21513 * 119.99867 * 359.97438 * 6 5 2 8 8 N 1.34777 * 120.00235 * 180.02562 * 6 5 2 9 9 C 1.46498 * 119.99828 * 180.27525 * 8 6 5 10 10 C 1.52996 * 109.47059 * 179.72339 * 9 8 6 11 11 H 1.08999 * 109.47456 * 54.99631 * 10 9 8 12 12 C 1.50703 * 109.47496 * 174.99895 * 10 9 8 13 13 O 1.21290 * 119.99447 * 359.97438 * 12 10 9 14 14 N 1.34775 * 120.00232 * 179.97438 * 12 10 9 15 15 C 1.37099 * 119.99851 * 180.02562 * 14 12 10 16 16 H 1.07995 * 119.99849 * 359.97438 * 15 14 12 17 17 C 1.38947 * 119.99710 * 179.97438 * 15 14 12 18 18 N 1.31407 * 120.00228 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99668 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46909 * 90.00363 * 19 17 15 21 21 H 1.48500 * 109.47087 * 209.99721 * 19 17 15 22 22 H 1.48500 * 109.47228 * 330.00203 * 19 17 15 23 23 C 1.50703 * 109.47086 * 294.99941 * 10 9 8 24 24 C 1.38242 * 119.99856 * 299.72271 * 23 10 9 25 25 C 1.38237 * 119.99992 * 179.78429 * 24 23 10 26 26 C 1.38236 * 119.99842 * 0.44829 * 25 24 23 27 27 C 1.38228 * 119.99919 * 359.81136 * 26 25 24 28 28 C 1.38236 * 120.00295 * 119.99857 * 23 10 9 29 29 H 1.08996 * 109.47509 * 299.99293 * 1 2 3 30 30 H 1.09006 * 109.47298 * 59.99979 * 1 2 3 31 31 H 1.09003 * 109.46856 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47042 * 179.97438 * 3 2 1 33 33 H 1.08992 * 109.47205 * 300.00164 * 3 2 1 34 34 H 1.09001 * 109.46587 * 60.00389 * 3 2 1 35 35 H 1.09003 * 109.46840 * 300.00288 * 4 2 1 36 36 H 1.09006 * 109.47115 * 59.99560 * 4 2 1 37 37 H 1.08995 * 109.47291 * 179.97438 * 4 2 1 38 38 H 0.97001 * 119.99727 * 359.97438 * 8 6 5 39 39 H 1.09004 * 109.46963 * 299.72135 * 9 8 6 40 40 H 1.08994 * 109.47567 * 59.72287 * 9 8 6 41 41 H 0.96996 * 120.00052 * 359.97438 * 14 12 10 42 42 H 0.97006 * 120.00134 * 179.97438 * 18 17 15 43 43 H 1.08003 * 119.99660 * 0.02562 * 24 23 10 44 44 H 1.08000 * 119.99882 * 180.27357 * 25 24 23 45 45 H 1.07999 * 119.99406 * 179.83188 * 26 25 24 46 46 H 1.08003 * 120.00012 * 179.97438 * 27 26 25 47 47 H 1.07997 * 119.99658 * 359.97438 * 28 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3382 7 8 0.9510 -2.5095 0.5039 8 7 2.0673 -2.6655 2.4170 9 6 1.6788 -4.0686 2.5801 10 6 2.2829 -4.6180 3.8739 11 1 1.9871 -3.9850 4.7105 12 6 1.7844 -6.0213 4.1049 13 8 1.0205 -6.5315 3.3128 14 7 2.1872 -6.7093 5.1916 15 6 1.7340 -7.9861 5.4014 16 1 1.0540 -8.4404 4.6961 17 6 2.1498 -8.6955 6.5214 18 7 2.9769 -8.1425 7.3798 19 14 1.5318 -10.4350 6.8076 20 1 2.4550 -11.4011 6.1600 21 1 1.4751 -10.7063 8.2665 22 1 0.1740 -10.5802 6.2239 23 6 3.7856 -4.6310 3.7607 24 6 4.3976 -5.3753 2.7695 25 6 5.7759 -5.3838 2.6628 26 6 6.5424 -4.6553 3.5531 27 6 5.9307 -3.9154 4.5475 28 6 4.5523 -3.9033 4.6515 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.6767 -1.7488 -1.2493 36 1 1.6767 -0.2073 -2.1393 37 1 3.1300 -0.7207 -1.2495 38 1 2.6269 -2.2366 3.0832 39 1 0.5922 -4.1415 2.6268 40 1 2.0457 -4.6481 1.7330 41 1 2.7983 -6.3013 5.8248 42 1 3.2669 -8.6377 8.1619 43 1 3.7988 -5.9471 2.0760 44 1 6.2538 -5.9618 1.8857 45 1 7.6193 -4.6642 3.4714 46 1 6.5296 -3.3466 5.2434 47 1 4.0743 -3.3251 5.4283 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079860808.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:40 Heat of formation + Delta-G solvation = -104.364886 kcal Electronic energy + Delta-G solvation = -29187.115396 eV Core-core repulsion = 25141.561971 eV Total energy + Delta-G solvation = -4045.553424 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.73108 -39.66525 -37.92310 -37.32876 -35.10667 -34.16209 -33.90494 -32.30953 -31.11201 -30.66886 -28.51109 -27.56429 -27.48917 -25.52119 -23.81624 -22.53228 -21.97115 -21.17088 -20.15799 -19.04743 -18.20861 -17.73344 -16.89029 -16.63170 -16.17595 -15.97103 -15.31367 -14.84828 -14.65738 -14.50964 -14.46893 -14.20758 -13.94095 -13.87427 -13.45018 -13.12979 -13.10186 -12.76565 -12.64076 -12.35740 -12.20885 -12.05633 -12.02042 -11.98090 -11.63102 -11.53823 -11.38650 -11.35767 -11.11896 -10.72410 -10.70748 -10.42726 -10.40789 -10.26317 -10.00435 -9.57688 -9.00674 -8.87386 -8.66233 -8.20521 -8.02875 -6.47314 -3.88114 1.56414 1.65531 2.22412 2.96307 3.14030 3.24082 3.29825 3.75430 3.99484 4.09445 4.22773 4.58533 4.62353 4.76941 4.80997 4.91101 5.12862 5.19071 5.22648 5.27072 5.29668 5.36706 5.38159 5.49779 5.52516 5.53124 5.61699 5.71000 5.73253 5.79944 5.81979 6.03996 6.10172 6.18276 6.20443 6.23390 6.25625 6.29822 6.47192 6.58367 6.67950 6.74363 6.86458 7.22504 7.50070 7.54217 7.98281 8.49192 8.52060 9.10143 9.46060 9.95509 10.69560 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014852 B = 0.003006 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.846401 B = 9312.769682 C =10497.816301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.136 3.864 3 C -0.140 4.140 4 C -0.184 4.184 5 O -0.368 6.368 6 C 0.649 3.351 7 O -0.567 6.567 8 N -0.706 5.706 9 C 0.166 3.834 10 C -0.074 4.074 11 H 0.097 0.903 12 C 0.449 3.551 13 O -0.590 6.590 14 N -0.547 5.547 15 C -0.302 4.302 16 H 0.105 0.895 17 C 0.026 3.974 18 N -0.895 5.895 19 Si 0.930 3.070 20 H -0.277 1.277 21 H -0.283 1.283 22 H -0.268 1.268 23 C -0.071 4.071 24 C -0.097 4.097 25 C -0.118 4.118 26 C -0.124 4.124 27 C -0.119 4.119 28 C -0.115 4.115 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.089 0.911 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.403 0.597 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.394 0.606 42 H 0.273 0.727 43 H 0.123 0.877 44 H 0.118 0.882 45 H 0.117 0.883 46 H 0.119 0.881 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.746 17.227 -8.850 19.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.197 4.197 4 C -0.241 4.241 5 O -0.283 6.283 6 C 0.401 3.599 7 O -0.456 6.456 8 N -0.365 5.365 9 C 0.044 3.956 10 C -0.096 4.096 11 H 0.115 0.885 12 C 0.234 3.766 13 O -0.476 6.476 14 N -0.181 5.181 15 C -0.431 4.431 16 H 0.123 0.877 17 C -0.177 4.177 18 N -0.536 5.536 19 Si 0.757 3.243 20 H -0.203 1.203 21 H -0.209 1.209 22 H -0.193 1.193 23 C -0.072 4.072 24 C -0.116 4.116 25 C -0.136 4.136 26 C -0.142 4.142 27 C -0.137 4.137 28 C -0.133 4.133 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.108 0.892 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.108 0.892 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.238 0.762 39 H 0.103 0.897 40 H 0.097 0.903 41 H 0.228 0.772 42 H 0.083 0.917 43 H 0.141 0.859 44 H 0.136 0.864 45 H 0.135 0.865 46 H 0.137 0.863 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.943 16.575 -9.644 19.578 hybrid contribution 0.485 -0.494 0.997 1.214 sum 4.428 16.081 -8.647 18.788 Atomic orbital electron populations 1.22522 0.94061 1.05264 1.02267 1.22015 0.94342 0.91398 0.82302 1.21851 1.02189 0.92708 1.02960 1.22519 1.01499 1.03710 0.96368 1.86287 1.71738 1.23959 1.46309 1.18027 0.79109 0.80322 0.82393 1.90908 1.41092 1.70359 1.43257 1.44797 1.55352 1.12883 1.23428 1.21073 1.00566 0.77201 0.96780 1.20445 0.92015 0.98431 0.98750 0.88469 1.19194 0.86294 0.86579 0.84561 1.90564 1.39630 1.70420 1.46956 1.41800 1.41402 1.14088 1.20841 1.19734 1.26181 0.89493 1.07736 0.87737 1.25284 0.96490 1.00315 0.95589 1.69618 1.32714 1.38383 1.12841 0.85862 0.79414 0.81672 0.77397 1.20334 1.20864 1.19298 1.19605 0.93907 0.97568 0.96074 1.21047 0.94726 0.97782 0.97997 1.21085 0.93821 0.99304 0.99387 1.21078 0.99473 0.97828 0.95842 1.21032 0.94575 0.99727 0.98345 1.21048 0.93941 0.99712 0.98596 0.92227 0.91326 0.89181 0.91539 0.90291 0.91539 0.89200 0.91331 0.92244 0.76233 0.89746 0.90307 0.77232 0.91749 0.85947 0.86363 0.86542 0.86296 0.85998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.97 8.37 37.16 0.31 -1.66 16 2 C 0.14 1.48 1.13 -90.62 -0.10 1.38 16 3 C -0.14 -1.09 8.85 37.16 0.33 -0.76 16 4 C -0.18 -1.98 8.37 37.16 0.31 -1.67 16 5 O -0.37 -4.84 9.94 -40.32 -0.40 -5.24 16 6 C 0.65 9.81 8.06 54.06 0.44 10.24 16 7 O -0.57 -9.91 11.88 -19.28 -0.23 -10.14 16 8 N -0.71 -9.89 5.35 -65.28 -0.35 -10.24 16 9 C 0.17 2.75 4.31 -4.04 -0.02 2.73 16 10 C -0.07 -1.25 2.42 -92.92 -0.22 -1.48 16 11 H 0.10 1.44 7.88 -51.93 -0.41 1.03 16 12 C 0.45 10.19 6.73 -10.98 -0.07 10.12 16 13 O -0.59 -15.44 15.49 5.55 0.09 -15.36 16 14 N -0.55 -13.50 5.19 -10.96 -0.06 -13.55 16 15 C -0.30 -8.23 9.68 -14.93 -0.14 -8.38 16 16 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 17 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 18 N -0.90 -23.92 13.05 55.50 0.72 -23.20 16 19 Si 0.93 20.75 29.55 -169.99 -5.02 15.73 16 20 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 22 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 23 C -0.07 -1.12 4.10 -104.62 -0.43 -1.55 16 24 C -0.10 -1.60 8.76 -39.58 -0.35 -1.94 16 25 C -0.12 -1.69 10.05 -39.58 -0.40 -2.09 16 26 C -0.12 -1.62 10.05 -39.59 -0.40 -2.01 16 27 C -0.12 -1.52 10.05 -39.59 -0.40 -1.92 16 28 C -0.11 -1.58 9.67 -39.58 -0.38 -1.96 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.09 1.21 5.88 -51.93 -0.31 0.91 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.09 1.22 5.88 -51.93 -0.31 0.91 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.40 4.80 8.34 -40.82 -0.34 4.46 16 39 H 0.08 1.54 7.95 -51.93 -0.41 1.13 16 40 H 0.08 1.42 7.24 -51.93 -0.38 1.05 16 41 H 0.39 9.47 7.78 -40.82 -0.32 9.15 16 42 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 43 H 0.12 2.13 7.56 -52.48 -0.40 1.74 16 44 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 45 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 46 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 47 H 0.12 1.42 7.95 -52.49 -0.42 1.00 16 LS Contribution 390.96 15.07 5.89 5.89 Total: -1.00 -31.52 390.96 -8.00 -39.52 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: -7.02 Total: 16.96 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: -1.62 Total: -0.37 kcal Atomic # 7 Polarization: -47.31 SS G_CDS: 0.32 Total: -46.99 kcal Atomic # 8 Polarization: -30.20 SS G_CDS: -0.54 Total: -30.74 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.52 -8.00 -39.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079860808.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.845 kcal (2) G-P(sol) polarization free energy of solvation -31.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds