Wall clock time and date at job start Tue Mar 31 2020 17:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47103 * 2 1 4 4 C 1.53002 * 109.47497 * 240.00350 * 2 1 3 5 5 O 1.45195 * 109.47224 * 120.00099 * 2 1 3 6 6 C 1.34638 * 117.00135 * 60.00489 * 5 2 1 7 7 O 1.21513 * 119.99867 * 359.97438 * 6 5 2 8 8 N 1.34777 * 120.00235 * 180.02562 * 6 5 2 9 9 C 1.46498 * 119.99828 * 180.27525 * 8 6 5 10 10 C 1.52996 * 109.47059 * 179.72339 * 9 8 6 11 11 H 1.08999 * 109.47456 * 54.99631 * 10 9 8 12 12 C 1.50703 * 109.47496 * 174.99895 * 10 9 8 13 13 O 1.21290 * 119.99447 * 359.97438 * 12 10 9 14 14 N 1.34775 * 120.00232 * 179.97438 * 12 10 9 15 15 C 1.37099 * 119.99851 * 180.02562 * 14 12 10 16 16 H 1.07995 * 119.99849 * 359.97438 * 15 14 12 17 17 C 1.38947 * 119.99710 * 179.97438 * 15 14 12 18 18 N 1.31407 * 120.00228 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99668 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46909 * 90.00363 * 19 17 15 21 21 H 1.48500 * 109.47087 * 209.99721 * 19 17 15 22 22 H 1.48500 * 109.47228 * 330.00203 * 19 17 15 23 23 C 1.50703 * 109.47086 * 294.99941 * 10 9 8 24 24 C 1.38242 * 119.99856 * 299.72271 * 23 10 9 25 25 C 1.38237 * 119.99992 * 179.78429 * 24 23 10 26 26 C 1.38236 * 119.99842 * 0.44829 * 25 24 23 27 27 C 1.38228 * 119.99919 * 359.81136 * 26 25 24 28 28 C 1.38236 * 120.00295 * 119.99857 * 23 10 9 29 29 H 1.08996 * 109.47509 * 299.99293 * 1 2 3 30 30 H 1.09006 * 109.47298 * 59.99979 * 1 2 3 31 31 H 1.09003 * 109.46856 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47042 * 179.97438 * 3 2 1 33 33 H 1.08992 * 109.47205 * 300.00164 * 3 2 1 34 34 H 1.09001 * 109.46587 * 60.00389 * 3 2 1 35 35 H 1.09003 * 109.46840 * 300.00288 * 4 2 1 36 36 H 1.09006 * 109.47115 * 59.99560 * 4 2 1 37 37 H 1.08995 * 109.47291 * 179.97438 * 4 2 1 38 38 H 0.97001 * 119.99727 * 359.97438 * 8 6 5 39 39 H 1.09004 * 109.46963 * 299.72135 * 9 8 6 40 40 H 1.08994 * 109.47567 * 59.72287 * 9 8 6 41 41 H 0.96996 * 120.00052 * 359.97438 * 14 12 10 42 42 H 0.97006 * 120.00134 * 179.97438 * 18 17 15 43 43 H 1.08003 * 119.99660 * 0.02562 * 24 23 10 44 44 H 1.08000 * 119.99882 * 180.27357 * 25 24 23 45 45 H 1.07999 * 119.99406 * 179.83188 * 26 25 24 46 46 H 1.08003 * 120.00012 * 179.97438 * 27 26 25 47 47 H 1.07997 * 119.99658 * 359.97438 * 28 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3382 7 8 0.9510 -2.5095 0.5039 8 7 2.0673 -2.6655 2.4170 9 6 1.6788 -4.0686 2.5801 10 6 2.2829 -4.6180 3.8739 11 1 1.9871 -3.9850 4.7105 12 6 1.7844 -6.0213 4.1049 13 8 1.0205 -6.5315 3.3128 14 7 2.1872 -6.7093 5.1916 15 6 1.7340 -7.9861 5.4014 16 1 1.0540 -8.4404 4.6961 17 6 2.1498 -8.6955 6.5214 18 7 2.9769 -8.1425 7.3798 19 14 1.5318 -10.4350 6.8076 20 1 2.4550 -11.4011 6.1600 21 1 1.4751 -10.7063 8.2665 22 1 0.1740 -10.5802 6.2239 23 6 3.7856 -4.6310 3.7607 24 6 4.3976 -5.3753 2.7695 25 6 5.7759 -5.3838 2.6628 26 6 6.5424 -4.6553 3.5531 27 6 5.9307 -3.9154 4.5475 28 6 4.5523 -3.9033 4.6515 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.6767 -1.7488 -1.2493 36 1 1.6767 -0.2073 -2.1393 37 1 3.1300 -0.7207 -1.2495 38 1 2.6269 -2.2366 3.0832 39 1 0.5922 -4.1415 2.6268 40 1 2.0457 -4.6481 1.7330 41 1 2.7983 -6.3013 5.8248 42 1 3.2669 -8.6377 8.1619 43 1 3.7988 -5.9471 2.0760 44 1 6.2538 -5.9618 1.8857 45 1 7.6193 -4.6642 3.4714 46 1 6.5296 -3.3466 5.2434 47 1 4.0743 -3.3251 5.4283 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079860808.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:39 Heat of formation + Delta-G solvation = -124.883686 kcal Electronic energy + Delta-G solvation = -29188.005157 eV Core-core repulsion = 25141.561971 eV Total energy + Delta-G solvation = -4046.443186 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.88495 -41.05463 -39.45077 -38.47022 -36.50135 -35.93167 -35.04662 -33.71083 -32.94612 -31.76563 -29.77065 -28.34490 -28.26369 -27.36325 -25.28960 -23.66770 -23.08320 -22.54982 -21.30639 -20.61237 -19.93208 -19.14897 -18.23498 -17.81288 -17.39688 -17.21047 -16.64094 -16.50347 -16.00139 -15.81678 -15.65967 -15.44807 -15.31731 -15.18831 -14.67254 -14.46399 -14.37037 -14.17737 -13.59132 -13.52975 -13.34683 -13.29430 -13.06262 -12.97281 -12.88835 -12.84023 -12.76276 -12.44622 -12.42361 -12.30859 -12.13534 -11.89784 -11.84771 -11.54214 -11.37647 -11.14180 -10.57239 -10.28590 -10.04204 -9.76873 -9.55895 -8.48617 -5.97230 0.43235 0.54812 1.09425 1.35881 1.41315 1.53599 1.75365 1.96099 2.28138 2.84459 3.00092 3.16333 3.34349 3.68923 3.77188 3.78487 3.82357 3.91634 3.97334 4.18567 4.23304 4.33288 4.40512 4.51779 4.59271 4.63451 4.65820 4.71807 4.78456 4.78741 4.85334 4.90757 4.90970 5.07314 5.10698 5.18843 5.23077 5.30834 5.37705 5.39977 5.56604 5.59705 5.65485 5.69321 5.95705 6.14709 6.39085 6.54124 7.08236 7.33426 7.50133 8.04046 8.68070 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014852 B = 0.003006 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.846401 B = 9312.769682 C =10497.816301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.123 3.877 3 C -0.133 4.133 4 C -0.181 4.181 5 O -0.365 6.365 6 C 0.648 3.352 7 O -0.595 6.595 8 N -0.692 5.692 9 C 0.182 3.818 10 C -0.056 4.056 11 H 0.126 0.874 12 C 0.450 3.550 13 O -0.631 6.631 14 N -0.554 5.554 15 C -0.336 4.336 16 H 0.080 0.920 17 C -0.007 4.007 18 N -0.913 5.913 19 Si 0.990 3.010 20 H -0.272 1.272 21 H -0.269 1.269 22 H -0.273 1.273 23 C -0.086 4.086 24 C -0.124 4.124 25 C -0.128 4.128 26 C -0.121 4.121 27 C -0.116 4.116 28 C -0.114 4.114 29 H 0.063 0.937 30 H 0.093 0.907 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.103 0.897 34 H 0.071 0.929 35 H 0.056 0.944 36 H 0.093 0.907 37 H 0.062 0.938 38 H 0.417 0.583 39 H 0.063 0.937 40 H 0.056 0.944 41 H 0.397 0.603 42 H 0.279 0.721 43 H 0.095 0.905 44 H 0.131 0.869 45 H 0.147 0.853 46 H 0.153 0.847 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.623 19.448 -7.910 22.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.087 3.913 3 C -0.190 4.190 4 C -0.238 4.238 5 O -0.279 6.279 6 C 0.401 3.599 7 O -0.486 6.486 8 N -0.352 5.352 9 C 0.058 3.942 10 C -0.078 4.078 11 H 0.143 0.857 12 C 0.237 3.763 13 O -0.519 6.519 14 N -0.189 5.189 15 C -0.465 4.465 16 H 0.098 0.902 17 C -0.208 4.208 18 N -0.553 5.553 19 Si 0.813 3.187 20 H -0.198 1.198 21 H -0.193 1.193 22 H -0.198 1.198 23 C -0.086 4.086 24 C -0.143 4.143 25 C -0.146 4.146 26 C -0.139 4.139 27 C -0.134 4.134 28 C -0.132 4.132 29 H 0.082 0.918 30 H 0.111 0.889 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.122 0.878 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.112 0.888 37 H 0.081 0.919 38 H 0.254 0.746 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.232 0.768 42 H 0.088 0.912 43 H 0.113 0.887 44 H 0.149 0.851 45 H 0.165 0.835 46 H 0.170 0.830 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 5.852 18.841 -8.686 21.557 hybrid contribution -0.061 -1.112 0.616 1.273 sum 5.792 17.729 -8.071 20.322 Atomic orbital electron populations 1.22484 0.94114 1.03487 1.03738 1.22462 0.94582 0.92901 0.81395 1.21875 1.02474 0.90198 1.04462 1.22482 1.01651 1.02064 0.97612 1.86307 1.71558 1.22528 1.47542 1.18147 0.78720 0.80984 0.82063 1.90911 1.42275 1.71158 1.44245 1.44488 1.55339 1.11725 1.23698 1.20652 0.99021 0.78483 0.96000 1.20220 0.93304 0.94692 0.99602 0.85652 1.20123 0.84755 0.88399 0.83034 1.90533 1.41233 1.72121 1.48019 1.41789 1.41856 1.13683 1.21553 1.19677 1.27308 0.91172 1.08362 0.90245 1.26003 0.96310 1.03632 0.94844 1.69668 1.32933 1.39634 1.13045 0.84978 0.78575 0.77263 0.77849 1.19773 1.19340 1.19765 1.19479 0.92744 0.99185 0.97215 1.21029 0.95825 0.98872 0.98550 1.21312 0.93028 0.99907 1.00388 1.21483 1.00991 0.96513 0.94889 1.21473 0.94380 0.99160 0.98402 1.21353 0.94578 0.99115 0.98184 0.91751 0.88870 0.92488 0.91102 0.87812 0.91007 0.92526 0.88845 0.91909 0.74637 0.91898 0.92592 0.76848 0.91175 0.88714 0.85080 0.83516 0.82951 0.83457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.73 8.37 71.98 0.60 -3.13 16 2 C 0.12 2.51 1.13 -10.79 -0.01 2.50 16 3 C -0.13 -1.69 8.85 71.98 0.64 -1.05 16 4 C -0.18 -3.77 8.37 71.98 0.60 -3.17 16 5 O -0.36 -9.32 9.94 -55.48 -0.55 -9.87 16 6 C 0.65 19.95 8.06 129.79 1.05 20.99 16 7 O -0.59 -21.90 11.88 19.80 0.24 -21.67 16 8 N -0.69 -19.59 5.35 -590.86 -3.16 -22.75 16 9 C 0.18 6.34 4.31 86.38 0.37 6.72 16 10 C -0.06 -1.94 2.42 -12.29 -0.03 -1.97 16 11 H 0.13 3.60 7.88 -2.39 -0.02 3.58 16 12 C 0.45 21.35 6.73 87.66 0.59 21.94 16 13 O -0.63 -35.13 15.49 -3.06 -0.05 -35.18 16 14 N -0.55 -28.18 5.19 -306.99 -1.59 -29.77 16 15 C -0.34 -18.94 9.68 84.04 0.81 -18.13 16 16 H 0.08 4.80 7.16 -2.91 -0.02 4.77 16 17 C -0.01 -0.38 5.50 84.93 0.47 0.09 16 18 N -0.91 -48.46 13.05 21.66 0.28 -48.18 16 19 Si 0.99 42.68 29.55 68.60 2.03 44.71 16 20 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 21 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 22 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 23 C -0.09 -2.68 4.10 -19.86 -0.08 -2.76 16 24 C -0.12 -4.20 8.76 22.27 0.20 -4.00 16 25 C -0.13 -3.60 10.05 22.27 0.22 -3.37 16 26 C -0.12 -2.80 10.05 22.27 0.22 -2.58 16 27 C -0.12 -2.57 10.05 22.27 0.22 -2.35 16 28 C -0.11 -2.86 9.67 22.27 0.22 -2.65 16 29 H 0.06 1.23 8.14 -2.39 -0.02 1.22 16 30 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 31 H 0.06 1.58 5.88 -2.39 -0.01 1.57 16 32 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.06 1.59 5.88 -2.39 -0.01 1.57 16 36 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 37 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.42 9.45 8.34 -92.71 -0.77 8.67 16 39 H 0.06 2.45 7.95 -2.38 -0.02 2.43 16 40 H 0.06 2.20 7.24 -2.39 -0.02 2.19 16 41 H 0.40 19.34 7.78 -92.71 -0.72 18.62 16 42 H 0.28 13.84 8.31 -92.70 -0.77 13.07 16 43 H 0.09 3.62 7.56 -2.91 -0.02 3.60 16 44 H 0.13 3.19 8.06 -2.91 -0.02 3.16 16 45 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 46 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 47 H 0.15 2.88 7.95 -2.91 -0.02 2.86 16 Total: -1.00 -71.93 390.96 2.78 -69.15 By element: Atomic # 1 Polarization: 47.00 SS G_CDS: -0.50 Total: 46.50 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: 6.09 Total: 7.08 kcal Atomic # 7 Polarization: -96.23 SS G_CDS: -4.47 Total: -100.71 kcal Atomic # 8 Polarization: -66.36 SS G_CDS: -0.36 Total: -66.72 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -71.93 2.78 -69.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079860808.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.735 kcal (2) G-P(sol) polarization free energy of solvation -71.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds