Wall clock time and date at job start Tue Mar 31 2020 18:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46879 * 2 1 4 4 H 1.08994 * 109.47169 * 54.99965 * 3 2 1 5 5 C 1.53000 * 109.46888 * 174.99930 * 3 2 1 6 6 N 1.46495 * 109.47264 * 294.99813 * 3 2 1 7 7 C 1.34773 * 120.00113 * 155.00484 * 6 3 2 8 8 O 1.21361 * 120.00061 * 359.97438 * 7 6 3 9 9 C 1.49356 * 120.00296 * 180.02562 * 7 6 3 10 10 O 1.21385 * 119.99673 * 359.97438 * 9 7 6 11 11 N 1.34773 * 120.00296 * 180.02562 * 9 7 6 12 12 C 1.39721 * 119.99975 * 175.38739 * 11 9 7 13 13 C 1.38992 * 120.04757 * 214.82805 * 12 11 9 14 14 C 1.38103 * 120.03658 * 179.71727 * 13 12 11 15 15 C 1.38224 * 120.12696 * 0.55700 * 14 13 12 16 16 C 1.38772 * 120.09840 * 359.72059 * 15 14 13 17 17 O 1.35896 * 120.01983 * 179.97438 * 16 15 14 18 18 C 1.42903 * 116.99976 * 0.02562 * 17 16 15 19 19 C 1.53003 * 109.46988 * 179.97438 * 18 17 16 20 20 C 1.50707 * 109.46616 * 180.02562 * 19 18 17 21 21 H 1.07997 * 120.00377 * 359.97438 * 20 19 18 22 22 C 1.37882 * 119.99706 * 180.02562 * 20 19 18 23 23 N 1.31517 * 120.00001 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00012 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46810 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47014 * 119.99970 * 24 22 20 27 27 H 1.48499 * 109.46884 * 240.00101 * 24 22 20 28 28 C 1.38607 * 119.96578 * 359.97438 * 16 15 14 29 29 H 1.09001 * 109.47335 * 299.99984 * 1 2 3 30 30 H 1.08998 * 109.46961 * 60.00200 * 1 2 3 31 31 H 1.09007 * 109.46771 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47335 * 240.00016 * 2 1 3 33 33 H 1.08998 * 109.46961 * 119.99800 * 2 1 3 34 34 H 1.09005 * 109.47535 * 180.02562 * 5 3 2 35 35 H 1.09004 * 109.47516 * 299.99831 * 5 3 2 36 36 H 1.09003 * 109.47727 * 59.99783 * 5 3 2 37 37 H 0.97005 * 119.99895 * 334.99960 * 6 3 2 38 38 H 0.97005 * 119.99835 * 355.37726 * 11 9 7 39 39 H 1.07997 * 119.97880 * 359.97263 * 13 12 11 40 40 H 1.07993 * 119.93557 * 180.25126 * 14 13 12 41 41 H 1.08000 * 119.95086 * 179.74594 * 15 14 13 42 42 H 1.08995 * 109.47346 * 300.00042 * 18 17 16 43 43 H 1.09008 * 109.47035 * 60.00417 * 18 17 16 44 44 H 1.08990 * 109.47549 * 299.99963 * 19 18 17 45 45 H 1.08999 * 109.47004 * 60.00334 * 19 18 17 46 46 H 0.97001 * 119.99983 * 180.02562 * 23 22 20 47 47 H 1.08003 * 120.06810 * 180.02562 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5648 1.4443 0.1257 6 7 1.6524 2.0975 -1.2518 7 6 1.5257 3.4384 -1.2996 8 8 1.7321 4.1032 -0.3055 9 6 1.1300 4.1061 -2.5756 10 8 0.9231 3.4411 -3.5698 11 7 1.0037 5.4470 -2.6236 12 6 0.7283 6.0798 -3.8385 13 6 1.2703 7.3305 -4.1103 14 6 1.0027 7.9531 -5.3136 15 6 0.1865 7.3401 -6.2456 16 6 -0.3622 6.0940 -5.9774 17 8 -1.1649 5.4929 -6.8946 18 6 -1.4008 6.2008 -8.1134 19 6 -2.3194 5.3730 -9.0144 20 6 -2.5676 6.1194 -10.2999 21 1 -2.1157 7.0874 -10.4582 22 6 -3.3725 5.5667 -11.2735 23 7 -3.9231 4.3881 -11.0805 24 14 -3.6807 6.4921 -12.8667 25 1 -2.9526 7.7859 -12.8364 26 1 -3.1992 5.6792 -14.0123 27 1 -5.1359 6.7469 -13.0174 28 6 -0.0912 5.4626 -4.7736 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.9282 2.4720 0.1262 35 1 3.8532 0.9570 1.0572 36 1 3.9995 0.9053 -0.7160 37 1 1.4871 1.5660 -2.0463 38 1 1.1039 5.9729 -1.8146 39 1 1.9044 7.8138 -3.3818 40 1 1.4279 8.9231 -5.5248 41 1 -0.0243 7.8314 -7.1840 42 1 -1.8740 7.1574 -7.8922 43 1 -0.4526 6.3736 -8.6225 44 1 -1.8458 4.4166 -9.2356 45 1 -3.2676 5.1998 -8.5055 46 1 -4.4891 3.9991 -11.7656 47 1 -0.5170 4.4926 -4.5634 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080106405.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:50 Heat of formation + Delta-G solvation = -96.078739 kcal Electronic energy + Delta-G solvation = -27536.552978 eV Core-core repulsion = 23491.358868 eV Total energy + Delta-G solvation = -4045.194110 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.30698 -39.97028 -38.98074 -37.25440 -37.02431 -34.76615 -33.35714 -32.73557 -30.92092 -30.35713 -29.77348 -29.10135 -25.83133 -24.98600 -24.11918 -22.88130 -22.11942 -21.35947 -20.90226 -20.26293 -19.09474 -18.04020 -17.27423 -16.44831 -16.37015 -16.07447 -15.92972 -15.45588 -15.35636 -15.25215 -14.63426 -14.53084 -14.42323 -14.31667 -13.89369 -13.88037 -13.46821 -13.07324 -12.82987 -12.73915 -12.33262 -12.26323 -12.09983 -11.85903 -11.78049 -11.68890 -11.54409 -11.37660 -11.21536 -10.95541 -10.79926 -10.56768 -10.38721 -9.85627 -9.81234 -9.67918 -9.64808 -9.27957 -8.46087 -8.36967 -7.87318 -6.09840 -4.14456 0.86786 1.50566 1.60517 1.99157 2.88475 3.21524 3.26849 3.33942 3.37537 3.79823 3.91623 4.10703 4.21792 4.41832 4.48379 4.58041 4.91781 4.95547 5.05000 5.14195 5.15301 5.24274 5.26577 5.31018 5.38845 5.39994 5.50026 5.57565 5.60493 5.72133 5.74701 5.82308 5.90934 6.01118 6.03856 6.13483 6.28221 6.47262 6.55775 6.66813 6.71844 6.88657 7.03951 7.41766 7.51411 7.65074 7.65151 7.81189 8.05711 8.24196 8.91400 9.49787 11.01754 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015526 B = 0.002012 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.034671 B =13912.556154 C =15427.040159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.132 4.132 3 C 0.138 3.862 4 H 0.094 0.906 5 C -0.166 4.166 6 N -0.693 5.693 7 C 0.514 3.486 8 O -0.519 6.519 9 C 0.502 3.498 10 O -0.490 6.490 11 N -0.640 5.640 12 C 0.168 3.832 13 C -0.188 4.188 14 C -0.061 4.061 15 C -0.221 4.221 16 C 0.163 3.837 17 O -0.311 6.311 18 C 0.064 3.936 19 C 0.024 3.976 20 C -0.525 4.525 21 H 0.059 0.941 22 C 0.059 3.941 23 N -0.889 5.889 24 Si 0.899 3.101 25 H -0.272 1.272 26 H -0.282 1.282 27 H -0.283 1.283 28 C -0.161 4.161 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.414 0.586 38 H 0.422 0.578 39 H 0.124 0.876 40 H 0.128 0.872 41 H 0.133 0.867 42 H 0.052 0.948 43 H 0.052 0.948 44 H 0.028 0.972 45 H 0.028 0.972 46 H 0.263 0.737 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.033 -3.240 24.826 28.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.170 4.170 3 C 0.034 3.966 4 H 0.112 0.888 5 C -0.224 4.224 6 N -0.347 5.347 7 C 0.294 3.706 8 O -0.395 6.395 9 C 0.283 3.717 10 O -0.362 6.362 11 N -0.287 5.287 12 C 0.074 3.926 13 C -0.209 4.209 14 C -0.080 4.080 15 C -0.240 4.240 16 C 0.115 3.885 17 O -0.224 6.224 18 C -0.010 4.010 19 C -0.013 4.013 20 C -0.564 4.564 21 H 0.077 0.923 22 C -0.143 4.143 23 N -0.527 5.527 24 Si 0.726 3.274 25 H -0.196 1.196 26 H -0.208 1.208 27 H -0.209 1.209 28 C -0.182 4.182 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.251 0.749 38 H 0.260 0.740 39 H 0.142 0.858 40 H 0.145 0.855 41 H 0.151 0.849 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.047 0.953 45 H 0.046 0.954 46 H 0.072 0.928 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 13.830 -3.628 24.782 28.611 hybrid contribution -0.149 0.661 -1.019 1.224 sum 13.681 -2.967 23.763 27.580 Atomic orbital electron populations 1.21813 0.94993 1.02186 1.02449 1.21861 0.96883 0.94762 1.03507 1.21199 0.95420 0.93488 0.86470 0.88842 1.22203 0.94763 1.02947 1.02506 1.45891 1.67827 1.06094 1.14856 1.19933 0.78660 0.83566 0.88392 1.90770 1.48999 1.64029 1.35709 1.20260 0.79058 0.83175 0.89191 1.90855 1.46224 1.63655 1.35506 1.43020 1.68392 1.06622 1.10687 1.17278 0.96389 0.92948 0.85958 1.20663 1.05015 0.95953 0.99238 1.20678 0.96058 0.99020 0.92251 1.21442 1.03762 0.96529 1.02265 1.18949 0.89454 0.90656 0.89423 1.86195 1.61910 1.46723 1.27587 1.23370 1.00079 0.96394 0.81110 1.19138 0.94081 0.95710 0.92352 1.21009 1.30364 1.04468 1.00532 0.92279 1.25003 0.95525 0.95005 0.98743 1.69991 1.32026 1.16194 1.34498 0.86427 0.78045 0.79837 0.83052 1.19635 1.20845 1.20855 1.20399 1.01959 1.02839 0.92972 0.92486 0.92307 0.92185 0.90963 0.89962 0.91877 0.91164 0.92066 0.74908 0.74022 0.85793 0.85458 0.84879 0.92985 0.92994 0.95327 0.95362 0.92762 0.83753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.87 9.80 37.16 0.36 -0.51 16 2 C -0.13 -0.61 5.47 -26.73 -0.15 -0.76 16 3 C 0.14 0.87 2.57 -67.93 -0.17 0.70 16 4 H 0.09 0.68 7.58 -51.93 -0.39 0.29 16 5 C -0.17 -0.96 9.48 37.16 0.35 -0.61 16 6 N -0.69 -5.53 4.52 -54.27 -0.25 -5.78 16 7 C 0.51 5.28 7.85 -11.63 -0.09 5.19 16 8 O -0.52 -6.04 16.14 5.49 0.09 -5.95 16 9 C 0.50 6.02 7.73 -11.63 -0.09 5.93 16 10 O -0.49 -7.20 13.91 5.47 0.08 -7.12 16 11 N -0.64 -7.18 5.32 -10.31 -0.05 -7.24 16 12 C 0.17 2.27 6.29 -83.77 -0.53 1.74 16 13 C -0.19 -2.22 9.96 -39.35 -0.39 -2.61 16 14 C -0.06 -0.76 10.03 -39.64 -0.40 -1.16 16 15 C -0.22 -3.40 9.04 -39.39 -0.36 -3.75 16 16 C 0.16 2.94 6.68 -39.25 -0.26 2.67 16 17 O -0.31 -6.60 10.13 -19.41 -0.20 -6.80 16 18 C 0.06 1.39 4.68 37.16 0.17 1.57 16 19 C 0.02 0.64 5.34 -27.88 -0.15 0.50 16 20 C -0.53 -14.70 9.11 -34.43 -0.31 -15.01 16 21 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 22 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 23 N -0.89 -26.59 13.29 55.43 0.74 -25.86 16 24 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 25 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 27 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 28 C -0.16 -2.67 8.63 -39.23 -0.34 -3.01 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.39 7.75 -51.93 -0.40 -0.01 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.41 3.07 8.07 -40.82 -0.33 2.74 16 38 H 0.42 3.70 8.30 -40.82 -0.34 3.36 16 39 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 40 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 41 H 0.13 1.99 6.29 -52.49 -0.33 1.66 16 42 H 0.05 1.05 7.66 -51.93 -0.40 0.66 16 43 H 0.05 1.06 7.66 -51.92 -0.40 0.67 16 44 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 47 H 0.14 2.55 6.22 -52.48 -0.33 2.23 16 LS Contribution 397.29 15.07 5.99 5.99 Total: -1.00 -32.79 397.29 -8.18 -40.97 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -7.11 Total: 3.02 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -2.45 Total: -7.54 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: 0.44 Total: -38.87 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.03 Total: -19.87 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.79 -8.18 -40.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080106405.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.104 kcal (2) G-P(sol) polarization free energy of solvation -32.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds