Wall clock time and date at job start Tue Mar 31 2020 18:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46879 * 2 1 4 4 H 1.08994 * 109.47169 * 54.99965 * 3 2 1 5 5 C 1.53000 * 109.46888 * 174.99930 * 3 2 1 6 6 N 1.46495 * 109.47264 * 294.99813 * 3 2 1 7 7 C 1.34773 * 120.00113 * 155.00484 * 6 3 2 8 8 O 1.21361 * 120.00061 * 359.97438 * 7 6 3 9 9 C 1.49356 * 120.00296 * 180.02562 * 7 6 3 10 10 O 1.21385 * 119.99673 * 359.97438 * 9 7 6 11 11 N 1.34773 * 120.00296 * 180.02562 * 9 7 6 12 12 C 1.39721 * 119.99975 * 175.38739 * 11 9 7 13 13 C 1.38992 * 120.04757 * 214.82805 * 12 11 9 14 14 C 1.38103 * 120.03658 * 179.71727 * 13 12 11 15 15 C 1.38224 * 120.12696 * 0.55700 * 14 13 12 16 16 C 1.38772 * 120.09840 * 359.72059 * 15 14 13 17 17 O 1.35896 * 120.01983 * 179.97438 * 16 15 14 18 18 C 1.42903 * 116.99976 * 0.02562 * 17 16 15 19 19 C 1.53003 * 109.46988 * 179.97438 * 18 17 16 20 20 C 1.50707 * 109.46616 * 180.02562 * 19 18 17 21 21 H 1.07997 * 120.00377 * 359.97438 * 20 19 18 22 22 C 1.37882 * 119.99706 * 180.02562 * 20 19 18 23 23 N 1.31517 * 120.00001 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00012 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46810 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47014 * 119.99970 * 24 22 20 27 27 H 1.48499 * 109.46884 * 240.00101 * 24 22 20 28 28 C 1.38607 * 119.96578 * 359.97438 * 16 15 14 29 29 H 1.09001 * 109.47335 * 299.99984 * 1 2 3 30 30 H 1.08998 * 109.46961 * 60.00200 * 1 2 3 31 31 H 1.09007 * 109.46771 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47335 * 240.00016 * 2 1 3 33 33 H 1.08998 * 109.46961 * 119.99800 * 2 1 3 34 34 H 1.09005 * 109.47535 * 180.02562 * 5 3 2 35 35 H 1.09004 * 109.47516 * 299.99831 * 5 3 2 36 36 H 1.09003 * 109.47727 * 59.99783 * 5 3 2 37 37 H 0.97005 * 119.99895 * 334.99960 * 6 3 2 38 38 H 0.97005 * 119.99835 * 355.37726 * 11 9 7 39 39 H 1.07997 * 119.97880 * 359.97263 * 13 12 11 40 40 H 1.07993 * 119.93557 * 180.25126 * 14 13 12 41 41 H 1.08000 * 119.95086 * 179.74594 * 15 14 13 42 42 H 1.08995 * 109.47346 * 300.00042 * 18 17 16 43 43 H 1.09008 * 109.47035 * 60.00417 * 18 17 16 44 44 H 1.08990 * 109.47549 * 299.99963 * 19 18 17 45 45 H 1.08999 * 109.47004 * 60.00334 * 19 18 17 46 46 H 0.97001 * 119.99983 * 180.02562 * 23 22 20 47 47 H 1.08003 * 120.06810 * 180.02562 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5648 1.4443 0.1257 6 7 1.6524 2.0975 -1.2518 7 6 1.5257 3.4384 -1.2996 8 8 1.7321 4.1032 -0.3055 9 6 1.1300 4.1061 -2.5756 10 8 0.9231 3.4411 -3.5698 11 7 1.0037 5.4470 -2.6236 12 6 0.7283 6.0798 -3.8385 13 6 1.2703 7.3305 -4.1103 14 6 1.0027 7.9531 -5.3136 15 6 0.1865 7.3401 -6.2456 16 6 -0.3622 6.0940 -5.9774 17 8 -1.1649 5.4929 -6.8946 18 6 -1.4008 6.2008 -8.1134 19 6 -2.3194 5.3730 -9.0144 20 6 -2.5676 6.1194 -10.2999 21 1 -2.1157 7.0874 -10.4582 22 6 -3.3725 5.5667 -11.2735 23 7 -3.9231 4.3881 -11.0805 24 14 -3.6807 6.4921 -12.8667 25 1 -2.9526 7.7859 -12.8364 26 1 -3.1992 5.6792 -14.0123 27 1 -5.1359 6.7469 -13.0174 28 6 -0.0912 5.4626 -4.7736 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.9282 2.4720 0.1262 35 1 3.8532 0.9570 1.0572 36 1 3.9995 0.9053 -0.7160 37 1 1.4871 1.5660 -2.0463 38 1 1.1039 5.9729 -1.8146 39 1 1.9044 7.8138 -3.3818 40 1 1.4279 8.9231 -5.5248 41 1 -0.0243 7.8314 -7.1840 42 1 -1.8740 7.1574 -7.8922 43 1 -0.4526 6.3736 -8.6225 44 1 -1.8458 4.4166 -9.2356 45 1 -3.2676 5.1998 -8.5055 46 1 -4.4891 3.9991 -11.7656 47 1 -0.5170 4.4926 -4.5634 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080106405.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:50 Heat of formation + Delta-G solvation = -117.880252 kcal Electronic energy + Delta-G solvation = -27537.498363 eV Core-core repulsion = 23491.358868 eV Total energy + Delta-G solvation = -4046.139494 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.26412 -41.07484 -40.08275 -38.50226 -37.70359 -35.88514 -35.38356 -33.37779 -32.61319 -31.22052 -30.80284 -30.36589 -27.11535 -26.53284 -24.75474 -23.93831 -23.59195 -22.42532 -21.77196 -21.41521 -20.11536 -19.26237 -18.39878 -18.07632 -17.41503 -17.03331 -16.96820 -16.85609 -16.77451 -16.63251 -16.20068 -15.38627 -15.31345 -14.94005 -14.66935 -14.52982 -14.43362 -14.37509 -14.31268 -14.29656 -13.43034 -13.33279 -13.24232 -12.93908 -12.79219 -12.71228 -12.68419 -12.52171 -12.33245 -12.17869 -11.97902 -11.80713 -11.68200 -11.58634 -11.39412 -11.30427 -10.78254 -10.63450 -10.36708 -9.53602 -9.09394 -8.26913 -6.40813 -0.13421 0.43390 0.50216 1.12340 1.41046 1.42314 1.55854 1.96696 2.19629 2.40873 2.60906 2.76570 3.07512 3.25486 3.71347 3.88435 4.01283 4.12328 4.13433 4.17534 4.21336 4.27427 4.39385 4.44952 4.50247 4.57081 4.61971 4.70857 4.73902 4.78024 4.91647 5.04461 5.12066 5.13635 5.17821 5.24666 5.30380 5.33508 5.37026 5.37739 5.45700 5.47353 5.66260 5.76496 5.86621 6.06284 6.20183 6.53568 6.59293 6.74452 6.78375 7.29390 8.86611 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015526 B = 0.002012 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.034671 B =13912.556154 C =15427.040159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.125 4.125 3 C 0.135 3.865 4 H 0.085 0.915 5 C -0.162 4.162 6 N -0.683 5.683 7 C 0.520 3.480 8 O -0.533 6.533 9 C 0.501 3.499 10 O -0.522 6.522 11 N -0.629 5.629 12 C 0.167 3.833 13 C -0.168 4.168 14 C -0.051 4.051 15 C -0.227 4.227 16 C 0.125 3.875 17 O -0.343 6.343 18 C 0.084 3.916 19 C 0.026 3.974 20 C -0.543 4.543 21 H 0.074 0.926 22 C -0.002 4.002 23 N -0.932 5.932 24 Si 0.979 3.021 25 H -0.255 1.255 26 H -0.278 1.278 27 H -0.277 1.277 28 C -0.181 4.181 29 H 0.054 0.946 30 H 0.042 0.958 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.045 0.955 35 H 0.089 0.911 36 H 0.065 0.935 37 H 0.417 0.583 38 H 0.436 0.564 39 H 0.167 0.833 40 H 0.169 0.831 41 H 0.136 0.864 42 H 0.066 0.934 43 H 0.063 0.937 44 H -0.004 1.004 45 H -0.003 1.003 46 H 0.267 0.733 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.025 -1.234 25.796 30.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.163 4.163 3 C 0.032 3.968 4 H 0.104 0.896 5 C -0.220 4.220 6 N -0.336 5.336 7 C 0.299 3.701 8 O -0.410 6.410 9 C 0.283 3.717 10 O -0.397 6.397 11 N -0.277 5.277 12 C 0.073 3.927 13 C -0.188 4.188 14 C -0.070 4.070 15 C -0.246 4.246 16 C 0.079 3.921 17 O -0.257 6.257 18 C 0.010 3.990 19 C -0.011 4.011 20 C -0.581 4.581 21 H 0.092 0.908 22 C -0.200 4.200 23 N -0.572 5.572 24 Si 0.802 3.198 25 H -0.179 1.179 26 H -0.203 1.203 27 H -0.203 1.203 28 C -0.202 4.202 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.120 0.880 34 H 0.064 0.936 35 H 0.108 0.892 36 H 0.084 0.916 37 H 0.254 0.746 38 H 0.276 0.724 39 H 0.184 0.816 40 H 0.186 0.814 41 H 0.154 0.846 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.014 0.986 45 H 0.015 0.985 46 H 0.075 0.925 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 15.846 -1.619 25.804 30.324 hybrid contribution -0.706 -0.013 -1.152 1.351 sum 15.140 -1.632 24.652 28.976 Atomic orbital electron populations 1.21825 0.95822 1.02388 1.01572 1.21847 0.96027 0.93633 1.04786 1.21383 0.96031 0.94213 0.85152 0.89646 1.22173 0.93911 1.02129 1.03771 1.45994 1.66509 1.05358 1.15711 1.19603 0.78895 0.84186 0.87373 1.90764 1.50137 1.64412 1.35718 1.20658 0.78280 0.83329 0.89450 1.90853 1.47637 1.64365 1.36796 1.42972 1.67624 1.06556 1.10577 1.17404 0.95639 0.93627 0.86001 1.21151 1.03499 0.94514 0.99616 1.21145 0.94348 1.00148 0.91317 1.21599 1.04215 0.95508 1.03286 1.19219 0.91019 0.92411 0.89464 1.86099 1.63801 1.47829 1.27993 1.22918 0.99441 0.95495 0.81181 1.18985 0.93486 0.95209 0.93398 1.21433 1.30529 1.05108 1.01047 0.90810 1.26095 0.95049 0.95888 1.02956 1.70141 1.32835 1.18134 1.36066 0.85198 0.78124 0.78824 0.77664 1.17892 1.20317 1.20280 1.20361 1.03526 1.02484 0.93786 0.92689 0.93867 0.91468 0.90300 0.87988 0.93611 0.89226 0.91606 0.74591 0.72356 0.81580 0.81393 0.84619 0.91631 0.91884 0.98595 0.98456 0.92470 0.86091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 9.80 71.98 0.71 -0.97 16 2 C -0.13 -0.98 5.47 30.59 0.17 -0.81 16 3 C 0.14 1.57 2.57 44.99 0.12 1.69 16 4 H 0.09 1.18 7.58 -2.39 -0.02 1.16 16 5 C -0.16 -1.63 9.48 71.98 0.68 -0.95 16 6 N -0.68 -10.76 4.52 -443.98 -2.01 -12.76 16 7 C 0.52 10.56 7.85 87.24 0.68 11.25 16 8 O -0.53 -12.00 16.14 -3.28 -0.05 -12.06 16 9 C 0.50 12.11 7.73 87.24 0.67 12.78 16 10 O -0.52 -16.05 13.91 -3.36 -0.05 -16.10 16 11 N -0.63 -13.49 5.32 -304.87 -1.62 -15.11 16 12 C 0.17 4.34 6.29 38.20 0.24 4.58 16 13 C -0.17 -3.36 9.96 22.42 0.22 -3.13 16 14 C -0.05 -1.09 10.03 22.23 0.22 -0.87 16 15 C -0.23 -6.72 9.04 22.39 0.20 -6.52 16 16 C 0.13 4.64 6.68 22.49 0.15 4.79 16 17 O -0.34 -15.44 10.13 -92.38 -0.94 -16.37 16 18 C 0.08 3.75 4.68 71.98 0.34 4.09 16 19 C 0.03 1.48 5.34 29.85 0.16 1.64 16 20 C -0.54 -30.97 9.11 25.60 0.23 -30.74 16 21 H 0.07 3.89 7.74 -2.91 -0.02 3.87 16 22 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 23 N -0.93 -57.59 13.29 21.45 0.28 -57.30 16 24 Si 0.98 43.80 29.54 68.60 2.03 45.83 16 25 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 26 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 27 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 28 C -0.18 -6.22 8.63 22.50 0.19 -6.03 16 29 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.04 0.58 7.75 -2.39 -0.02 0.56 16 31 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 32 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.04 0.64 8.14 -2.38 -0.02 0.62 16 35 H 0.09 0.57 8.14 -2.38 -0.02 0.55 16 36 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.42 6.26 8.07 -92.70 -0.75 5.51 16 38 H 0.44 6.81 8.30 -92.70 -0.77 6.04 16 39 H 0.17 1.99 8.06 -2.91 -0.02 1.97 16 40 H 0.17 2.27 8.06 -2.91 -0.02 2.24 16 41 H 0.14 3.88 6.29 -2.91 -0.02 3.86 16 42 H 0.07 2.70 7.66 -2.39 -0.02 2.68 16 43 H 0.06 2.63 7.66 -2.38 -0.02 2.61 16 44 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 45 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 46 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 47 H 0.12 4.66 6.22 -2.91 -0.02 4.64 16 Total: -1.00 -75.00 397.29 2.58 -72.42 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: -0.52 Total: 20.29 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: 5.46 Total: -8.83 kcal Atomic # 7 Polarization: -81.83 SS G_CDS: -3.34 Total: -85.18 kcal Atomic # 8 Polarization: -43.49 SS G_CDS: -1.04 Total: -44.53 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -75.00 2.58 -72.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080106405.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.464 kcal (2) G-P(sol) polarization free energy of solvation -74.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds