Wall clock time and date at job start Tue Mar 31 2020 18:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47171 * 2 1 4 4 H 1.08993 * 109.47309 * 305.00244 * 3 2 1 5 5 C 1.52994 * 109.47068 * 184.99650 * 3 2 1 6 6 N 1.46502 * 109.46945 * 65.00285 * 3 2 1 7 7 C 1.34778 * 120.00004 * 205.00321 * 6 3 2 8 8 O 1.21356 * 119.99851 * 359.97438 * 7 6 3 9 9 C 1.49350 * 119.99852 * 179.97438 * 7 6 3 10 10 O 1.21379 * 120.00155 * 359.97438 * 9 7 6 11 11 N 1.34781 * 120.00071 * 179.97438 * 9 7 6 12 12 C 1.39716 * 120.00344 * 185.27235 * 11 9 7 13 13 C 1.38993 * 120.05225 * 213.38716 * 12 11 9 14 14 C 1.38095 * 120.03489 * 179.97438 * 13 12 11 15 15 C 1.38227 * 120.13259 * 359.72358 * 14 13 12 16 16 C 1.38774 * 120.09411 * 0.55285 * 15 14 13 17 17 O 1.35896 * 120.01666 * 179.71786 * 16 15 14 18 18 C 1.42897 * 117.00226 * 359.73105 * 17 16 15 19 19 C 1.53003 * 109.46998 * 179.97438 * 18 17 16 20 20 C 1.50703 * 109.46649 * 180.02562 * 19 18 17 21 21 H 1.07999 * 120.00563 * 359.97438 * 20 19 18 22 22 C 1.37881 * 119.99863 * 179.97438 * 20 19 18 23 23 N 1.31518 * 119.99674 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00202 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46785 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.46844 * 120.00142 * 24 22 20 27 27 H 1.48499 * 109.47277 * 240.00063 * 24 22 20 28 28 C 1.38615 * 119.96352 * 359.44967 * 16 15 14 29 29 H 1.08997 * 109.47506 * 299.99961 * 1 2 3 30 30 H 1.09006 * 109.47234 * 59.99374 * 1 2 3 31 31 H 1.08999 * 109.47224 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46944 * 240.00544 * 2 1 3 33 33 H 1.08998 * 109.47145 * 119.99952 * 2 1 3 34 34 H 1.09004 * 109.47010 * 60.00547 * 5 3 2 35 35 H 1.08999 * 109.47084 * 180.02562 * 5 3 2 36 36 H 1.08993 * 109.47541 * 300.00452 * 5 3 2 37 37 H 0.96998 * 120.00144 * 24.99219 * 6 3 2 38 38 H 0.97003 * 119.99390 * 5.28379 * 11 9 7 39 39 H 1.07997 * 119.97481 * 359.96180 * 13 12 11 40 40 H 1.08004 * 119.93388 * 180.02562 * 14 13 12 41 41 H 1.08003 * 119.95642 * 180.27684 * 15 14 13 42 42 H 1.09001 * 109.46912 * 299.99506 * 18 17 16 43 43 H 1.08997 * 109.47217 * 59.99482 * 18 17 16 44 44 H 1.09001 * 109.47000 * 299.99592 * 19 18 17 45 45 H 1.09002 * 109.47246 * 60.00210 * 19 18 17 46 46 H 0.97000 * 119.99624 * 180.02562 * 23 22 20 47 47 H 1.07996 * 120.06252 * 180.25259 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5648 1.4443 -0.1256 6 7 1.6525 2.0974 1.2519 7 6 1.5256 3.4384 1.2997 8 8 1.7328 4.1033 0.3059 9 6 1.1300 4.1060 2.5758 10 8 0.9223 3.4409 3.5696 11 7 1.0036 5.4470 2.6238 12 6 0.7418 6.0809 3.8410 13 6 -0.0390 7.2303 3.8734 14 6 -0.2979 7.8564 5.0768 15 6 0.2135 7.3391 6.2522 16 6 0.9985 6.1950 6.2255 17 8 1.5052 5.6911 7.3814 18 6 1.1945 6.3933 8.5865 19 6 1.8465 5.6819 9.7739 20 6 1.5183 6.4222 11.0448 21 1 0.9062 7.3113 11.0093 22 6 1.9994 5.9644 12.2532 23 7 2.7451 4.8820 12.2964 24 14 1.5931 6.8823 13.8285 25 1 0.7450 8.0592 13.5110 26 1 0.8604 5.9796 14.7524 27 1 2.8504 7.3374 14.4746 28 6 1.2609 5.5635 5.0198 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5140 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8532 0.9570 -1.0571 35 1 3.9282 2.4719 -0.1252 36 1 3.9994 0.9053 0.7161 37 1 1.4871 1.5660 2.0463 38 1 1.0941 5.9719 1.8131 39 1 -0.4432 7.6341 2.9570 40 1 -0.9052 8.7492 5.1002 41 1 0.0055 7.8284 7.1923 42 1 1.5735 7.4132 8.5208 43 1 0.1136 6.4156 8.7257 44 1 1.4672 4.6622 9.8394 45 1 2.9274 5.6593 9.6349 46 1 3.0833 4.5597 13.1465 47 1 1.8683 4.6707 4.9977 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080106409.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:53 Heat of formation + Delta-G solvation = -96.663629 kcal Electronic energy + Delta-G solvation = -27536.618212 eV Core-core repulsion = 23491.398739 eV Total energy + Delta-G solvation = -4045.219473 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.30747 -39.97136 -38.98353 -37.26156 -37.02405 -34.76973 -33.35972 -32.74026 -30.92579 -30.35390 -29.77052 -29.11109 -25.83379 -24.99232 -24.12945 -22.87951 -22.13765 -21.35854 -20.90014 -20.24623 -19.09589 -18.06750 -17.27517 -16.42703 -16.26584 -16.23285 -15.92001 -15.46127 -15.33560 -15.16413 -14.72214 -14.53719 -14.43383 -14.26644 -13.94612 -13.85814 -13.46771 -13.08164 -12.80065 -12.75351 -12.33353 -12.26815 -12.09896 -11.84956 -11.80203 -11.70153 -11.55295 -11.39407 -11.21579 -10.96010 -10.79820 -10.56680 -10.41398 -9.86024 -9.84483 -9.67482 -9.65242 -9.28192 -8.46054 -8.35392 -7.87835 -6.10005 -4.14613 0.85083 1.52106 1.60615 1.98537 2.88729 3.21445 3.26769 3.33875 3.37474 3.79578 3.91513 4.10596 4.21647 4.41716 4.48284 4.57350 4.92107 4.94410 5.05250 5.13819 5.14271 5.24853 5.26442 5.30644 5.37976 5.40352 5.48105 5.56870 5.59225 5.73058 5.73829 5.80561 5.91516 6.00633 6.03619 6.12526 6.26237 6.46924 6.54967 6.66089 6.71095 6.88108 7.03699 7.41788 7.51031 7.64807 7.64867 7.80879 8.05181 8.23998 8.91235 9.49648 11.01608 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015453 B = 0.001997 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.503125 B =14016.714382 C =15282.652816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.133 4.133 3 C 0.138 3.862 4 H 0.093 0.907 5 C -0.167 4.167 6 N -0.693 5.693 7 C 0.514 3.486 8 O -0.519 6.519 9 C 0.502 3.498 10 O -0.489 6.489 11 N -0.641 5.641 12 C 0.171 3.829 13 C -0.189 4.189 14 C -0.060 4.060 15 C -0.221 4.221 16 C 0.165 3.835 17 O -0.312 6.312 18 C 0.064 3.936 19 C 0.024 3.976 20 C -0.525 4.525 21 H 0.059 0.941 22 C 0.059 3.941 23 N -0.889 5.889 24 Si 0.899 3.101 25 H -0.272 1.272 26 H -0.282 1.282 27 H -0.282 1.282 28 C -0.162 4.162 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.414 0.586 38 H 0.422 0.578 39 H 0.124 0.876 40 H 0.128 0.872 41 H 0.134 0.866 42 H 0.052 0.948 43 H 0.052 0.948 44 H 0.028 0.972 45 H 0.028 0.972 46 H 0.263 0.737 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.796 -4.523 -28.072 28.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.170 4.170 3 C 0.035 3.965 4 H 0.111 0.889 5 C -0.225 4.225 6 N -0.347 5.347 7 C 0.294 3.706 8 O -0.395 6.395 9 C 0.283 3.717 10 O -0.361 6.361 11 N -0.288 5.288 12 C 0.078 3.922 13 C -0.210 4.210 14 C -0.079 4.079 15 C -0.241 4.241 16 C 0.117 3.883 17 O -0.224 6.224 18 C -0.009 4.009 19 C -0.013 4.013 20 C -0.564 4.564 21 H 0.077 0.923 22 C -0.143 4.143 23 N -0.527 5.527 24 Si 0.726 3.274 25 H -0.196 1.196 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.183 4.183 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.251 0.749 38 H 0.260 0.740 39 H 0.142 0.858 40 H 0.146 0.854 41 H 0.151 0.849 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.047 0.953 45 H 0.046 0.954 46 H 0.072 0.928 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -3.542 -4.880 -27.945 28.588 hybrid contribution -0.306 0.635 0.988 1.214 sum -3.848 -4.245 -26.957 27.559 Atomic orbital electron populations 1.21807 0.95089 1.02115 1.02365 1.21862 0.96796 0.94823 1.03563 1.21198 0.95494 0.93428 0.86426 0.88872 1.22205 0.94699 1.03035 1.02549 1.45895 1.67827 1.06094 1.14861 1.19933 0.78679 0.83567 0.88402 1.90770 1.49001 1.64004 1.35699 1.20258 0.79005 0.83125 0.89282 1.90865 1.45830 1.63708 1.35745 1.43057 1.68769 1.06484 1.10492 1.17255 0.96874 0.93705 0.84383 1.20646 1.03199 0.98215 0.98909 1.20682 0.97464 0.98576 0.91159 1.21435 1.03943 0.98727 0.99956 1.18917 0.91167 0.91146 0.87072 1.86192 1.69559 1.52962 1.13722 1.23371 0.99876 0.95968 0.81734 1.19139 0.96820 0.96580 0.88741 1.21007 1.32834 1.11512 0.91017 0.92276 1.25004 0.94901 0.95070 0.99305 1.69992 1.34223 1.22427 1.26071 0.86426 0.78202 0.79747 0.82980 1.19632 1.20848 1.20849 1.20242 1.05431 1.03470 0.89127 0.92378 0.92521 0.92222 0.89939 0.90920 0.91159 0.91824 0.91995 0.74917 0.74024 0.85783 0.85441 0.84856 0.92976 0.92974 0.95328 0.95366 0.92763 0.84253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.81 9.80 37.16 0.36 -0.45 16 2 C -0.13 -0.61 5.47 -26.73 -0.15 -0.75 16 3 C 0.14 0.88 2.57 -67.93 -0.17 0.71 16 4 H 0.09 0.68 7.58 -51.93 -0.39 0.28 16 5 C -0.17 -1.02 9.48 37.15 0.35 -0.67 16 6 N -0.69 -5.57 4.52 -54.27 -0.25 -5.82 16 7 C 0.51 5.31 7.85 -11.63 -0.09 5.22 16 8 O -0.52 -6.07 16.15 5.49 0.09 -5.99 16 9 C 0.50 6.04 7.62 -11.63 -0.09 5.96 16 10 O -0.49 -7.21 14.16 5.47 0.08 -7.13 16 11 N -0.64 -7.20 5.32 -10.31 -0.05 -7.26 16 12 C 0.17 2.32 6.27 -83.77 -0.53 1.79 16 13 C -0.19 -2.23 9.96 -39.35 -0.39 -2.62 16 14 C -0.06 -0.75 10.03 -39.64 -0.40 -1.14 16 15 C -0.22 -3.40 9.04 -39.39 -0.36 -3.76 16 16 C 0.17 2.97 6.68 -39.24 -0.26 2.70 16 17 O -0.31 -6.60 10.13 -19.41 -0.20 -6.80 16 18 C 0.06 1.39 4.68 37.16 0.17 1.57 16 19 C 0.02 0.64 5.34 -27.88 -0.15 0.49 16 20 C -0.53 -14.69 9.11 -34.44 -0.31 -15.00 16 21 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 22 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 23 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 24 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 25 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 27 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 28 C -0.16 -2.69 8.59 -39.23 -0.34 -3.03 16 29 H 0.06 0.36 7.75 -51.93 -0.40 -0.05 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.41 3.09 8.07 -40.82 -0.33 2.76 16 38 H 0.42 3.70 8.30 -40.82 -0.34 3.36 16 39 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 40 H 0.13 1.21 8.06 -52.48 -0.42 0.78 16 41 H 0.13 1.99 6.29 -52.48 -0.33 1.66 16 42 H 0.05 1.06 7.67 -51.93 -0.40 0.66 16 43 H 0.05 1.07 7.65 -51.93 -0.40 0.67 16 44 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 47 H 0.14 2.45 6.42 -52.49 -0.34 2.12 16 LS Contribution 397.57 15.07 5.99 5.99 Total: -1.00 -32.85 397.57 -8.18 -41.03 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -7.12 Total: 2.92 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -2.44 Total: -7.39 kcal Atomic # 7 Polarization: -39.37 SS G_CDS: 0.44 Total: -38.93 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -0.03 Total: -19.92 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.85 -8.18 -41.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080106409.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.634 kcal (2) G-P(sol) polarization free energy of solvation -32.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds