Wall clock time and date at job start Tue Mar 31 2020 18:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47171 * 2 1 4 4 H 1.08993 * 109.47309 * 305.00244 * 3 2 1 5 5 C 1.52994 * 109.47068 * 184.99650 * 3 2 1 6 6 N 1.46502 * 109.46945 * 65.00285 * 3 2 1 7 7 C 1.34778 * 120.00004 * 205.00321 * 6 3 2 8 8 O 1.21356 * 119.99851 * 359.97438 * 7 6 3 9 9 C 1.49350 * 119.99852 * 179.97438 * 7 6 3 10 10 O 1.21379 * 120.00155 * 359.97438 * 9 7 6 11 11 N 1.34781 * 120.00071 * 179.97438 * 9 7 6 12 12 C 1.39716 * 120.00344 * 185.27235 * 11 9 7 13 13 C 1.38993 * 120.05225 * 213.38716 * 12 11 9 14 14 C 1.38095 * 120.03489 * 179.97438 * 13 12 11 15 15 C 1.38227 * 120.13259 * 359.72358 * 14 13 12 16 16 C 1.38774 * 120.09411 * 0.55285 * 15 14 13 17 17 O 1.35896 * 120.01666 * 179.71786 * 16 15 14 18 18 C 1.42897 * 117.00226 * 359.73105 * 17 16 15 19 19 C 1.53003 * 109.46998 * 179.97438 * 18 17 16 20 20 C 1.50703 * 109.46649 * 180.02562 * 19 18 17 21 21 H 1.07999 * 120.00563 * 359.97438 * 20 19 18 22 22 C 1.37881 * 119.99863 * 179.97438 * 20 19 18 23 23 N 1.31518 * 119.99674 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00202 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46785 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.46844 * 120.00142 * 24 22 20 27 27 H 1.48499 * 109.47277 * 240.00063 * 24 22 20 28 28 C 1.38615 * 119.96352 * 359.44967 * 16 15 14 29 29 H 1.08997 * 109.47506 * 299.99961 * 1 2 3 30 30 H 1.09006 * 109.47234 * 59.99374 * 1 2 3 31 31 H 1.08999 * 109.47224 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46944 * 240.00544 * 2 1 3 33 33 H 1.08998 * 109.47145 * 119.99952 * 2 1 3 34 34 H 1.09004 * 109.47010 * 60.00547 * 5 3 2 35 35 H 1.08999 * 109.47084 * 180.02562 * 5 3 2 36 36 H 1.08993 * 109.47541 * 300.00452 * 5 3 2 37 37 H 0.96998 * 120.00144 * 24.99219 * 6 3 2 38 38 H 0.97003 * 119.99390 * 5.28379 * 11 9 7 39 39 H 1.07997 * 119.97481 * 359.96180 * 13 12 11 40 40 H 1.08004 * 119.93388 * 180.02562 * 14 13 12 41 41 H 1.08003 * 119.95642 * 180.27684 * 15 14 13 42 42 H 1.09001 * 109.46912 * 299.99506 * 18 17 16 43 43 H 1.08997 * 109.47217 * 59.99482 * 18 17 16 44 44 H 1.09001 * 109.47000 * 299.99592 * 19 18 17 45 45 H 1.09002 * 109.47246 * 60.00210 * 19 18 17 46 46 H 0.97000 * 119.99624 * 180.02562 * 23 22 20 47 47 H 1.07996 * 120.06252 * 180.25259 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5648 1.4443 -0.1256 6 7 1.6525 2.0974 1.2519 7 6 1.5256 3.4384 1.2997 8 8 1.7328 4.1033 0.3059 9 6 1.1300 4.1060 2.5758 10 8 0.9223 3.4409 3.5696 11 7 1.0036 5.4470 2.6238 12 6 0.7418 6.0809 3.8410 13 6 -0.0390 7.2303 3.8734 14 6 -0.2979 7.8564 5.0768 15 6 0.2135 7.3391 6.2522 16 6 0.9985 6.1950 6.2255 17 8 1.5052 5.6911 7.3814 18 6 1.1945 6.3933 8.5865 19 6 1.8465 5.6819 9.7739 20 6 1.5183 6.4222 11.0448 21 1 0.9062 7.3113 11.0093 22 6 1.9994 5.9644 12.2532 23 7 2.7451 4.8820 12.2964 24 14 1.5931 6.8823 13.8285 25 1 0.7450 8.0592 13.5110 26 1 0.8604 5.9796 14.7524 27 1 2.8504 7.3374 14.4746 28 6 1.2609 5.5635 5.0198 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5140 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8532 0.9570 -1.0571 35 1 3.9282 2.4719 -0.1252 36 1 3.9994 0.9053 0.7161 37 1 1.4871 1.5660 2.0463 38 1 1.0941 5.9719 1.8131 39 1 -0.4432 7.6341 2.9570 40 1 -0.9052 8.7492 5.1002 41 1 0.0055 7.8284 7.1923 42 1 1.5735 7.4132 8.5208 43 1 0.1136 6.4156 8.7257 44 1 1.4672 4.6622 9.8394 45 1 2.9274 5.6593 9.6349 46 1 3.0833 4.5597 13.1465 47 1 1.8683 4.6707 4.9977 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080106409.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:52 Heat of formation + Delta-G solvation = -118.525959 kcal Electronic energy + Delta-G solvation = -27537.566233 eV Core-core repulsion = 23491.398739 eV Total energy + Delta-G solvation = -4046.167494 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.26797 -41.07904 -40.08613 -38.50975 -37.70676 -35.88839 -35.38547 -33.37747 -32.61667 -31.21623 -30.81052 -30.37221 -27.11479 -26.54995 -24.75830 -23.92752 -23.61125 -22.42839 -21.77460 -21.39999 -20.11820 -19.28532 -18.40571 -18.08715 -17.28588 -17.14737 -16.99103 -16.94063 -16.73910 -16.59939 -16.09106 -15.54856 -15.22123 -14.94499 -14.67733 -14.53462 -14.43438 -14.37563 -14.30823 -14.29649 -13.43419 -13.30994 -13.27947 -12.95568 -12.79356 -12.71141 -12.68918 -12.52575 -12.33203 -12.18027 -11.97701 -11.82651 -11.68253 -11.58640 -11.39400 -11.32476 -10.81231 -10.63491 -10.37238 -9.52292 -9.09251 -8.26982 -6.40851 -0.15559 0.43346 0.51878 1.11504 1.41059 1.42308 1.55863 1.96473 2.19025 2.40716 2.60573 2.77064 3.07485 3.25037 3.71255 3.87148 4.01070 4.12141 4.13471 4.16368 4.20638 4.27382 4.38828 4.44893 4.49836 4.56680 4.60208 4.71025 4.73780 4.77282 4.91202 5.04699 5.12319 5.12778 5.15899 5.23799 5.30152 5.33415 5.36736 5.38100 5.45586 5.46999 5.66173 5.75934 5.86321 6.06215 6.19840 6.52952 6.58798 6.74413 6.77827 7.29363 8.86561 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015453 B = 0.001997 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.503125 B =14016.714382 C =15282.652816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.126 4.126 3 C 0.136 3.864 4 H 0.087 0.913 5 C -0.164 4.164 6 N -0.683 5.683 7 C 0.519 3.481 8 O -0.533 6.533 9 C 0.501 3.499 10 O -0.521 6.521 11 N -0.630 5.630 12 C 0.170 3.830 13 C -0.169 4.169 14 C -0.050 4.050 15 C -0.228 4.228 16 C 0.127 3.873 17 O -0.343 6.343 18 C 0.084 3.916 19 C 0.026 3.974 20 C -0.543 4.543 21 H 0.074 0.926 22 C -0.002 4.002 23 N -0.932 5.932 24 Si 0.979 3.021 25 H -0.255 1.255 26 H -0.278 1.278 27 H -0.277 1.277 28 C -0.182 4.182 29 H 0.044 0.956 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.101 0.899 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.043 0.957 36 H 0.063 0.937 37 H 0.417 0.583 38 H 0.436 0.564 39 H 0.167 0.833 40 H 0.169 0.831 41 H 0.136 0.864 42 H 0.066 0.934 43 H 0.063 0.937 44 H -0.004 1.004 45 H -0.003 1.003 46 H 0.267 0.733 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.368 -2.769 -29.682 30.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.164 4.164 3 C 0.033 3.967 4 H 0.106 0.894 5 C -0.222 4.222 6 N -0.336 5.336 7 C 0.299 3.701 8 O -0.410 6.410 9 C 0.283 3.717 10 O -0.396 6.396 11 N -0.278 5.278 12 C 0.076 3.924 13 C -0.189 4.189 14 C -0.068 4.068 15 C -0.247 4.247 16 C 0.081 3.919 17 O -0.257 6.257 18 C 0.010 3.990 19 C -0.011 4.011 20 C -0.581 4.581 21 H 0.092 0.908 22 C -0.200 4.200 23 N -0.572 5.572 24 Si 0.802 3.198 25 H -0.179 1.179 26 H -0.203 1.203 27 H -0.203 1.203 28 C -0.202 4.202 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.120 0.880 33 H 0.096 0.904 34 H 0.108 0.892 35 H 0.062 0.938 36 H 0.082 0.918 37 H 0.254 0.746 38 H 0.277 0.723 39 H 0.185 0.815 40 H 0.186 0.814 41 H 0.154 0.846 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.014 0.986 45 H 0.015 0.985 46 H 0.075 0.925 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -5.118 -3.124 -29.611 30.212 hybrid contribution 0.179 0.036 1.308 1.320 sum -4.938 -3.088 -28.303 28.896 Atomic orbital electron populations 1.21812 0.95539 1.02433 1.01664 1.21848 0.96288 0.93502 1.04719 1.21379 0.95808 0.94326 0.85189 0.89446 1.22186 0.94226 1.02028 1.03739 1.45998 1.66504 1.05360 1.15717 1.19618 0.78914 0.84187 0.87399 1.90763 1.50147 1.64385 1.35732 1.20645 0.78210 0.83311 0.89514 1.90860 1.47261 1.64443 1.36997 1.43006 1.68087 1.06380 1.10326 1.17384 0.96664 0.94273 0.84044 1.21143 1.00817 0.96426 1.00506 1.21152 0.96473 0.99268 0.89931 1.21595 1.03685 0.97842 1.01571 1.19189 0.93553 0.93174 0.86022 1.86096 1.71051 1.53997 1.14589 1.22919 0.99786 0.95551 0.80777 1.18987 0.95140 0.95541 0.91409 1.21432 1.32984 1.12026 0.91667 0.90805 1.26095 0.94486 0.95916 1.03493 1.70142 1.35440 1.24294 1.27306 0.85198 0.78255 0.78647 0.77712 1.17888 1.20327 1.20273 1.20212 1.06476 1.03339 0.90224 0.93709 0.92585 0.91419 0.88044 0.90443 0.89157 0.93787 0.91797 0.74591 0.72346 0.81523 0.81357 0.84588 0.91612 0.91868 0.98601 0.98450 0.92471 0.86564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 9.80 71.98 0.71 -0.76 16 2 C -0.13 -0.96 5.47 30.59 0.17 -0.79 16 3 C 0.14 1.61 2.57 44.99 0.12 1.73 16 4 H 0.09 1.18 7.58 -2.39 -0.02 1.17 16 5 C -0.16 -1.85 9.48 71.98 0.68 -1.17 16 6 N -0.68 -10.89 4.52 -443.98 -2.01 -12.89 16 7 C 0.52 10.66 7.85 87.24 0.68 11.34 16 8 O -0.53 -12.14 16.15 -3.27 -0.05 -12.19 16 9 C 0.50 12.16 7.62 87.24 0.66 12.83 16 10 O -0.52 -16.04 14.16 -3.34 -0.05 -16.09 16 11 N -0.63 -13.52 5.32 -304.88 -1.62 -15.15 16 12 C 0.17 4.42 6.27 38.20 0.24 4.66 16 13 C -0.17 -3.37 9.96 22.42 0.22 -3.15 16 14 C -0.05 -1.06 10.03 22.23 0.22 -0.84 16 15 C -0.23 -6.74 9.04 22.40 0.20 -6.53 16 16 C 0.13 4.70 6.68 22.49 0.15 4.85 16 17 O -0.34 -15.42 10.13 -92.38 -0.94 -16.35 16 18 C 0.08 3.75 4.68 71.98 0.34 4.08 16 19 C 0.03 1.48 5.34 29.85 0.16 1.64 16 20 C -0.54 -30.95 9.11 25.60 0.23 -30.71 16 21 H 0.07 3.89 7.74 -2.91 -0.02 3.87 16 22 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 23 N -0.93 -57.56 13.29 21.45 0.28 -57.28 16 24 Si 0.98 43.78 29.54 68.60 2.03 45.81 16 25 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 26 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 27 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 28 C -0.18 -6.24 8.59 22.50 0.19 -6.05 16 29 H 0.04 0.53 7.75 -2.39 -0.02 0.52 16 30 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 31 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16 35 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.42 6.32 8.07 -92.71 -0.75 5.57 16 38 H 0.44 6.79 8.30 -92.71 -0.77 6.03 16 39 H 0.17 1.97 8.06 -2.91 -0.02 1.94 16 40 H 0.17 2.25 8.06 -2.91 -0.02 2.23 16 41 H 0.14 3.88 6.29 -2.91 -0.02 3.86 16 42 H 0.07 2.71 7.67 -2.39 -0.02 2.69 16 43 H 0.06 2.63 7.65 -2.39 -0.02 2.61 16 44 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 45 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 46 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 47 H 0.12 4.45 6.42 -2.91 -0.02 4.43 16 Total: -1.00 -75.07 397.57 2.57 -72.50 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: -0.52 Total: 20.14 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: 5.44 Total: -8.50 kcal Atomic # 7 Polarization: -81.97 SS G_CDS: -3.35 Total: -85.32 kcal Atomic # 8 Polarization: -43.60 SS G_CDS: -1.04 Total: -44.63 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -75.07 2.57 -72.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080106409.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.021 kcal (2) G-P(sol) polarization free energy of solvation -75.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds