Wall clock time and date at job start Tue Mar 31 2020 18:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47069 * 2 1 4 4 N 1.46504 * 109.46615 * 119.99684 * 2 1 3 5 5 C 1.46505 * 120.00149 * 299.99739 * 4 2 1 6 6 C 1.50702 * 109.46836 * 270.00364 * 5 4 2 7 7 H 1.07994 * 120.00445 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99368 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00175 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99773 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46720 * 90.00459 * 10 8 6 12 12 H 1.48501 * 109.47014 * 210.00174 * 10 8 6 13 13 H 1.48500 * 109.47090 * 330.00561 * 10 8 6 14 14 C 1.34777 * 119.99736 * 120.00144 * 4 2 1 15 15 O 1.21288 * 119.99593 * 179.97438 * 14 4 2 16 16 C 1.50697 * 120.00369 * 359.97438 * 14 4 2 17 17 C 1.52997 * 109.47466 * 180.02562 * 16 14 4 18 18 O 1.42898 * 109.47319 * 180.02562 * 17 16 14 19 19 C 1.35912 * 117.00151 * 180.02562 * 18 17 16 20 20 C 1.38848 * 119.98243 * 359.71688 * 19 18 17 21 21 C 1.38240 * 120.23602 * 179.76665 * 20 19 18 22 22 C 1.38008 * 120.20875 * 0.51780 * 21 20 19 23 23 C 1.39566 * 119.96265 * 359.73773 * 22 21 20 24 24 C 1.47854 * 120.11424 * 179.97438 * 23 22 21 25 25 N 1.34778 * 120.00558 * 0.02910 * 24 23 22 26 26 O 1.21556 * 119.99899 * 180.02562 * 24 23 22 27 27 C 1.38454 * 119.98389 * 180.02562 * 19 18 17 28 28 H 1.09001 * 109.47510 * 300.00842 * 1 2 3 29 29 H 1.09005 * 109.47098 * 60.00157 * 1 2 3 30 30 H 1.08999 * 109.47453 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46943 * 239.99566 * 2 1 3 32 32 H 1.09000 * 109.46998 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.46771 * 299.99403 * 3 2 1 34 34 H 1.08995 * 109.47592 * 59.99963 * 3 2 1 35 35 H 1.08998 * 109.46420 * 30.00391 * 5 4 2 36 36 H 1.08995 * 109.46904 * 150.00397 * 5 4 2 37 37 H 0.97004 * 119.99914 * 180.02562 * 9 8 6 38 38 H 1.09002 * 109.47120 * 59.99760 * 16 14 4 39 39 H 1.08998 * 109.46862 * 300.00562 * 16 14 4 40 40 H 1.09002 * 109.47153 * 59.99773 * 17 16 14 41 41 H 1.09001 * 109.46832 * 299.99964 * 17 16 14 42 42 H 1.08004 * 119.88169 * 0.02704 * 20 19 18 43 43 H 1.08010 * 119.89531 * 180.25887 * 21 20 19 44 44 H 1.08003 * 120.01654 * 179.76692 * 22 21 20 45 45 H 0.97000 * 119.99839 * 359.97438 * 25 24 23 46 46 H 0.96996 * 120.00042 * 180.02562 * 25 24 23 47 47 H 1.07997 * 120.10414 * 359.94968 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 1.6643 -0.1900 2.5269 6 6 2.7031 0.8020 2.9830 7 1 3.5426 1.0364 2.3455 8 6 2.5809 1.4110 4.2139 9 7 1.5583 1.1259 4.9901 10 14 3.8689 2.6400 4.7798 11 1 3.4768 4.0042 4.3432 12 1 3.9702 2.6043 6.2609 13 1 5.1834 2.2887 4.1850 14 6 2.7931 -1.7864 1.0727 15 8 3.1976 -2.3578 2.0631 16 6 3.1568 -2.3017 -0.2960 17 6 4.0359 -3.5460 -0.1555 18 8 4.3812 -4.0342 -1.4533 19 6 5.1645 -5.1436 -1.5070 20 6 5.5962 -5.7457 -0.3326 21 6 6.3890 -6.8771 -0.3810 22 6 6.7656 -7.4096 -1.5973 23 6 6.3409 -6.8083 -2.7830 24 6 6.7429 -7.3756 -4.0878 25 7 7.5202 -8.4757 -4.1338 26 8 6.3722 -6.8499 -5.1192 27 6 5.5368 -5.6692 -2.7326 28 1 -0.3634 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9562 -0.8901 34 1 1.6767 1.9564 0.8899 35 1 0.6903 0.2975 2.4843 36 1 1.6236 -1.0224 3.2292 37 1 1.4722 1.5547 5.8560 38 1 3.7016 -1.5311 -0.8414 39 1 2.2483 -2.5587 -0.8406 40 1 3.4907 -4.3164 0.3897 41 1 4.9444 -3.2893 0.3893 42 1 5.3080 -5.3310 0.6221 43 1 6.7183 -7.3433 0.5359 44 1 7.3882 -8.2914 -1.6314 45 1 7.8163 -8.8950 -3.3108 46 1 7.7841 -8.8476 -4.9898 47 1 5.2052 -5.1994 -3.6467 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081728622.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:14 Heat of formation + Delta-G solvation = -92.975285 kcal Electronic energy + Delta-G solvation = -28020.710444 eV Core-core repulsion = 23975.650910 eV Total energy + Delta-G solvation = -4045.059534 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.67575 -39.66343 -39.12411 -37.30794 -36.05296 -34.16950 -32.96446 -32.04746 -31.31099 -30.87959 -29.82338 -27.48551 -26.74408 -25.15255 -23.80991 -22.69628 -22.35807 -21.24612 -20.61951 -18.99338 -18.06344 -17.50003 -17.03057 -16.56828 -16.39697 -16.25959 -16.08267 -15.61637 -15.09595 -15.05252 -14.53371 -14.49817 -14.19260 -13.99897 -13.56443 -13.47431 -13.24318 -13.03278 -12.51934 -12.35423 -12.28251 -11.96634 -11.81621 -11.69414 -11.58761 -11.26502 -11.06675 -10.96807 -10.86190 -10.78410 -10.57114 -10.43233 -10.38873 -10.11726 -10.04545 -9.57939 -9.33250 -9.02510 -8.49671 -8.44556 -7.72008 -6.06040 -4.09382 0.51106 1.11696 2.55395 2.77066 3.21803 3.27790 3.30203 3.35398 3.40123 3.56456 3.96482 4.39940 4.42979 4.50407 4.66350 4.82967 4.84764 5.01321 5.05638 5.10563 5.22374 5.24733 5.28725 5.46598 5.53635 5.63858 5.64347 5.75815 5.81622 5.89524 5.99965 6.03287 6.08276 6.13790 6.25112 6.29912 6.34948 6.40920 6.57587 6.91141 6.93630 7.06050 7.21958 7.42805 7.50987 7.85892 7.90352 8.22094 8.36368 8.85872 9.01349 9.54673 11.02088 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017889 B = 0.002172 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.825625 B =12891.096691 C =13696.121066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.130 3.870 3 C -0.157 4.157 4 N -0.588 5.588 5 C 0.245 3.755 6 C -0.519 4.519 7 H 0.058 0.942 8 C 0.060 3.940 9 N -0.895 5.895 10 Si 0.895 3.105 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.275 1.275 14 C 0.511 3.489 15 O -0.545 6.545 16 C -0.141 4.141 17 C 0.075 3.925 18 O -0.314 6.314 19 C 0.133 3.867 20 C -0.180 4.180 21 C -0.085 4.085 22 C -0.130 4.130 23 C -0.106 4.106 24 C 0.566 3.434 25 N -0.851 5.851 26 O -0.537 6.537 27 C -0.094 4.094 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.049 0.951 34 H 0.081 0.919 35 H 0.036 0.964 36 H 0.042 0.958 37 H 0.263 0.737 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.140 0.860 43 H 0.133 0.867 44 H 0.126 0.874 45 H 0.402 0.598 46 H 0.405 0.595 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.402 -15.847 -15.257 23.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.026 3.974 3 C -0.215 4.215 4 N -0.320 5.320 5 C 0.127 3.873 6 C -0.558 4.558 7 H 0.076 0.924 8 C -0.142 4.142 9 N -0.534 5.534 10 Si 0.723 3.277 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.200 1.200 14 C 0.297 3.703 15 O -0.424 6.424 16 C -0.181 4.181 17 C 0.000 4.000 18 O -0.228 6.228 19 C 0.087 3.913 20 C -0.199 4.199 21 C -0.104 4.104 22 C -0.149 4.149 23 C -0.109 4.109 24 C 0.352 3.648 25 N -0.415 5.415 26 O -0.414 6.414 27 C -0.114 4.114 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.095 0.905 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.100 0.900 35 H 0.054 0.946 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.158 0.842 43 H 0.151 0.849 44 H 0.144 0.856 45 H 0.231 0.769 46 H 0.236 0.764 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 7.094 -15.491 -15.246 22.863 hybrid contribution 0.976 0.387 0.747 1.288 sum 8.069 -15.103 -14.499 22.438 Atomic orbital electron populations 1.22157 0.95468 1.01837 1.02540 1.21055 0.94234 0.94270 0.87855 1.22139 1.01378 0.95611 1.02391 1.48316 1.48704 1.26069 1.08910 1.19271 0.95998 0.95029 0.77041 1.21418 1.08910 1.23380 1.02090 0.92362 1.24931 0.95778 0.97139 0.96361 1.69930 1.29526 1.43211 1.10738 0.86544 0.82000 0.81255 0.77908 1.20677 1.21168 1.19956 1.19922 0.79500 0.81287 0.89632 1.90684 1.53680 1.58371 1.39645 1.21555 1.01267 0.97433 0.97873 1.22559 0.99721 0.96046 0.81683 1.86015 1.64248 1.40222 1.32291 1.18846 0.91616 0.87285 0.93586 1.21679 1.01517 0.98344 0.98314 1.20912 0.96484 0.95063 0.97896 1.21121 1.01495 1.00508 0.91727 1.19541 1.01290 0.97331 0.92783 1.18233 0.77689 0.80026 0.88839 1.43731 1.54423 1.30668 1.12679 1.90834 1.54922 1.60441 1.35207 1.20458 0.98483 0.95633 0.96810 0.91279 0.92170 0.92888 0.90514 0.92720 0.93163 0.90032 0.94648 0.94016 0.92778 0.88271 0.88424 0.90881 0.90772 0.84244 0.84929 0.85619 0.76868 0.76386 0.83798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 9.17 37.16 0.34 -1.96 16 2 C 0.13 2.04 3.17 -67.93 -0.22 1.83 16 3 C -0.16 -2.52 8.47 37.16 0.31 -2.20 16 4 N -0.59 -11.82 2.39 -167.47 -0.40 -12.22 16 5 C 0.25 6.13 4.60 -5.19 -0.02 6.11 16 6 C -0.52 -14.07 7.83 -34.44 -0.27 -14.34 16 7 H 0.06 1.58 7.63 -52.49 -0.40 1.18 16 8 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 9 N -0.89 -25.99 13.29 55.43 0.74 -25.26 16 10 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 14 C 0.51 10.00 7.67 -10.99 -0.08 9.92 16 15 O -0.55 -12.88 15.56 5.55 0.09 -12.79 16 16 C -0.14 -2.01 4.38 -27.89 -0.12 -2.13 16 17 C 0.07 1.03 4.03 37.16 0.15 1.18 16 18 O -0.31 -4.18 10.13 -19.46 -0.20 -4.38 16 19 C 0.13 1.63 6.68 -39.28 -0.26 1.36 16 20 C -0.18 -1.93 9.03 -39.35 -0.36 -2.29 16 21 C -0.09 -0.72 10.03 -39.66 -0.40 -1.12 16 22 C -0.13 -0.99 9.54 -39.17 -0.37 -1.36 16 23 C -0.11 -1.06 5.87 -104.99 -0.62 -1.68 16 24 C 0.57 5.70 8.05 -12.32 -0.10 5.60 16 25 N -0.85 -4.55 8.82 30.53 0.27 -4.29 16 26 O -0.54 -7.59 17.18 5.32 0.09 -7.50 16 27 C -0.09 -1.12 9.53 -39.02 -0.37 -1.49 16 28 H 0.07 1.12 6.66 -51.93 -0.35 0.78 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.99 5.77 -51.93 -0.30 0.69 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.08 1.55 6.92 -51.93 -0.36 1.19 16 35 H 0.04 0.90 6.43 -51.93 -0.33 0.56 16 36 H 0.04 1.19 7.42 -51.93 -0.39 0.81 16 37 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 38 H 0.10 1.29 7.79 -51.93 -0.40 0.89 16 39 H 0.10 1.20 7.79 -51.93 -0.40 0.79 16 40 H 0.07 1.00 7.63 -51.93 -0.40 0.60 16 41 H 0.07 1.05 7.60 -51.93 -0.39 0.66 16 42 H 0.14 1.48 6.28 -52.48 -0.33 1.15 16 43 H 0.13 0.80 8.06 -52.48 -0.42 0.37 16 44 H 0.13 0.50 6.40 -52.48 -0.34 0.16 16 45 H 0.40 0.99 6.86 -40.82 -0.28 0.71 16 46 H 0.41 1.63 8.93 -40.82 -0.36 1.27 16 47 H 0.14 1.78 7.65 -52.49 -0.40 1.38 16 LS Contribution 388.42 15.07 5.85 5.85 Total: -1.00 -34.79 388.42 -7.75 -42.54 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -6.68 Total: 2.57 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -2.48 Total: -1.00 kcal Atomic # 7 Polarization: -42.37 SS G_CDS: 0.61 Total: -41.76 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.02 Total: -24.66 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.79 -7.75 -42.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081728622.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.435 kcal (2) G-P(sol) polarization free energy of solvation -34.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds