Wall clock time and date at job start Tue Mar 31 2020 18:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47069 * 2 1 4 4 N 1.46504 * 109.46615 * 119.99684 * 2 1 3 5 5 C 1.46505 * 120.00149 * 299.99739 * 4 2 1 6 6 C 1.50702 * 109.46836 * 270.00364 * 5 4 2 7 7 H 1.07994 * 120.00445 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99368 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00175 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99773 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46720 * 90.00459 * 10 8 6 12 12 H 1.48501 * 109.47014 * 210.00174 * 10 8 6 13 13 H 1.48500 * 109.47090 * 330.00561 * 10 8 6 14 14 C 1.34777 * 119.99736 * 120.00144 * 4 2 1 15 15 O 1.21288 * 119.99593 * 179.97438 * 14 4 2 16 16 C 1.50697 * 120.00369 * 359.97438 * 14 4 2 17 17 C 1.52997 * 109.47466 * 180.02562 * 16 14 4 18 18 O 1.42898 * 109.47319 * 180.02562 * 17 16 14 19 19 C 1.35912 * 117.00151 * 180.02562 * 18 17 16 20 20 C 1.38848 * 119.98243 * 359.71688 * 19 18 17 21 21 C 1.38240 * 120.23602 * 179.76665 * 20 19 18 22 22 C 1.38008 * 120.20875 * 0.51780 * 21 20 19 23 23 C 1.39566 * 119.96265 * 359.73773 * 22 21 20 24 24 C 1.47854 * 120.11424 * 179.97438 * 23 22 21 25 25 N 1.34778 * 120.00558 * 0.02910 * 24 23 22 26 26 O 1.21556 * 119.99899 * 180.02562 * 24 23 22 27 27 C 1.38454 * 119.98389 * 180.02562 * 19 18 17 28 28 H 1.09001 * 109.47510 * 300.00842 * 1 2 3 29 29 H 1.09005 * 109.47098 * 60.00157 * 1 2 3 30 30 H 1.08999 * 109.47453 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46943 * 239.99566 * 2 1 3 32 32 H 1.09000 * 109.46998 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.46771 * 299.99403 * 3 2 1 34 34 H 1.08995 * 109.47592 * 59.99963 * 3 2 1 35 35 H 1.08998 * 109.46420 * 30.00391 * 5 4 2 36 36 H 1.08995 * 109.46904 * 150.00397 * 5 4 2 37 37 H 0.97004 * 119.99914 * 180.02562 * 9 8 6 38 38 H 1.09002 * 109.47120 * 59.99760 * 16 14 4 39 39 H 1.08998 * 109.46862 * 300.00562 * 16 14 4 40 40 H 1.09002 * 109.47153 * 59.99773 * 17 16 14 41 41 H 1.09001 * 109.46832 * 299.99964 * 17 16 14 42 42 H 1.08004 * 119.88169 * 0.02704 * 20 19 18 43 43 H 1.08010 * 119.89531 * 180.25887 * 21 20 19 44 44 H 1.08003 * 120.01654 * 179.76692 * 22 21 20 45 45 H 0.97000 * 119.99839 * 359.97438 * 25 24 23 46 46 H 0.96996 * 120.00042 * 180.02562 * 25 24 23 47 47 H 1.07997 * 120.10414 * 359.94968 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 1.6643 -0.1900 2.5269 6 6 2.7031 0.8020 2.9830 7 1 3.5426 1.0364 2.3455 8 6 2.5809 1.4110 4.2139 9 7 1.5583 1.1259 4.9901 10 14 3.8689 2.6400 4.7798 11 1 3.4768 4.0042 4.3432 12 1 3.9702 2.6043 6.2609 13 1 5.1834 2.2887 4.1850 14 6 2.7931 -1.7864 1.0727 15 8 3.1976 -2.3578 2.0631 16 6 3.1568 -2.3017 -0.2960 17 6 4.0359 -3.5460 -0.1555 18 8 4.3812 -4.0342 -1.4533 19 6 5.1645 -5.1436 -1.5070 20 6 5.5962 -5.7457 -0.3326 21 6 6.3890 -6.8771 -0.3810 22 6 6.7656 -7.4096 -1.5973 23 6 6.3409 -6.8083 -2.7830 24 6 6.7429 -7.3756 -4.0878 25 7 7.5202 -8.4757 -4.1338 26 8 6.3722 -6.8499 -5.1192 27 6 5.5368 -5.6692 -2.7326 28 1 -0.3634 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9562 -0.8901 34 1 1.6767 1.9564 0.8899 35 1 0.6903 0.2975 2.4843 36 1 1.6236 -1.0224 3.2292 37 1 1.4722 1.5547 5.8560 38 1 3.7016 -1.5311 -0.8414 39 1 2.2483 -2.5587 -0.8406 40 1 3.4907 -4.3164 0.3897 41 1 4.9444 -3.2893 0.3893 42 1 5.3080 -5.3310 0.6221 43 1 6.7183 -7.3433 0.5359 44 1 7.3882 -8.2914 -1.6314 45 1 7.8163 -8.8950 -3.3108 46 1 7.7841 -8.8476 -4.9898 47 1 5.2052 -5.1994 -3.6467 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081728622.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:13 Heat of formation + Delta-G solvation = -117.817229 kcal Electronic energy + Delta-G solvation = -28021.787672 eV Core-core repulsion = 23975.650910 eV Total energy + Delta-G solvation = -4046.136762 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.53384 -40.93580 -40.22909 -38.18974 -37.58388 -34.98457 -34.84701 -33.24414 -32.43561 -32.10766 -30.73061 -29.30257 -27.97878 -26.31896 -25.11069 -23.90739 -23.44949 -22.60471 -21.45084 -19.85624 -19.42254 -18.60693 -18.42104 -18.02227 -17.43229 -17.37768 -16.98637 -16.91550 -16.43804 -16.11717 -15.93369 -15.75808 -15.20851 -14.85460 -14.76169 -14.63616 -14.55842 -14.31884 -14.06137 -13.72682 -13.37280 -13.31196 -13.07078 -12.91368 -12.86228 -12.74421 -12.71757 -12.47926 -12.22084 -12.10116 -12.02544 -11.81833 -11.62433 -11.50779 -11.25449 -10.75581 -10.66082 -10.59876 -10.10120 -9.44635 -9.32713 -8.19147 -6.30520 -0.26967 0.35583 1.36179 1.38431 1.48133 1.73224 1.78256 1.79268 2.35094 2.45717 2.67582 2.79761 3.10900 3.57834 3.74485 3.77099 3.88967 3.90753 4.01875 4.04367 4.11740 4.26691 4.29917 4.37967 4.44660 4.50554 4.69019 4.69983 4.85007 4.88103 4.88854 5.02478 5.05988 5.13786 5.16449 5.23709 5.25226 5.34340 5.44553 5.57583 5.59140 5.64812 5.85783 5.87505 6.11383 6.28255 6.39249 6.72618 6.81251 7.25744 7.29669 7.45451 8.88116 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017889 B = 0.002172 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.825625 B =12891.096691 C =13696.121066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.122 3.878 3 C -0.153 4.153 4 N -0.594 5.594 5 C 0.263 3.737 6 C -0.524 4.524 7 H 0.054 0.946 8 C 0.005 3.995 9 N -0.929 5.929 10 Si 0.960 3.040 11 H -0.266 1.266 12 H -0.284 1.284 13 H -0.274 1.274 14 C 0.502 3.498 15 O -0.595 6.595 16 C -0.126 4.126 17 C 0.084 3.916 18 O -0.322 6.322 19 C 0.108 3.892 20 C -0.189 4.189 21 C -0.083 4.083 22 C -0.109 4.109 23 C -0.114 4.114 24 C 0.564 3.436 25 N -0.824 5.824 26 O -0.587 6.587 27 C -0.112 4.112 28 H 0.038 0.962 29 H 0.096 0.904 30 H 0.057 0.943 31 H 0.117 0.883 32 H 0.044 0.956 33 H 0.089 0.911 34 H 0.044 0.956 35 H 0.027 0.973 36 H -0.005 1.005 37 H 0.265 0.735 38 H 0.119 0.881 39 H 0.126 0.874 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.135 0.865 43 H 0.164 0.836 44 H 0.171 0.829 45 H 0.419 0.581 46 H 0.415 0.585 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.052 -17.008 -16.925 25.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.020 3.980 3 C -0.211 4.211 4 N -0.324 5.324 5 C 0.142 3.858 6 C -0.563 4.563 7 H 0.072 0.928 8 C -0.193 4.193 9 N -0.570 5.570 10 Si 0.785 3.215 11 H -0.191 1.191 12 H -0.209 1.209 13 H -0.198 1.198 14 C 0.291 3.709 15 O -0.477 6.477 16 C -0.166 4.166 17 C 0.008 3.992 18 O -0.236 6.236 19 C 0.063 3.937 20 C -0.208 4.208 21 C -0.101 4.101 22 C -0.128 4.128 23 C -0.117 4.117 24 C 0.350 3.650 25 N -0.389 5.389 26 O -0.468 6.468 27 C -0.132 4.132 28 H 0.058 0.942 29 H 0.114 0.886 30 H 0.076 0.924 31 H 0.134 0.866 32 H 0.063 0.937 33 H 0.107 0.893 34 H 0.063 0.937 35 H 0.045 0.955 36 H 0.013 0.987 37 H 0.073 0.927 38 H 0.138 0.862 39 H 0.144 0.856 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.152 0.848 43 H 0.181 0.819 44 H 0.189 0.811 45 H 0.252 0.748 46 H 0.247 0.753 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 8.767 -16.685 -16.946 25.346 hybrid contribution 0.501 0.621 1.242 1.476 sum 9.268 -16.065 -15.704 24.302 Atomic orbital electron populations 1.22123 0.94225 1.02313 1.02813 1.21466 0.95310 0.94112 0.87129 1.22083 1.00706 0.95807 1.02458 1.48340 1.48930 1.26647 1.08524 1.18684 0.95313 0.92753 0.79056 1.21642 1.08963 1.23476 1.02195 0.92774 1.25791 0.97803 0.99111 0.96592 1.70051 1.31284 1.44479 1.11151 0.85523 0.79234 0.79402 0.77312 1.19122 1.20933 1.19841 1.20835 0.78297 0.80483 0.91294 1.90652 1.55385 1.59754 1.41930 1.21439 1.02874 0.98007 0.94264 1.22339 0.99086 0.95758 0.82006 1.85960 1.65002 1.41099 1.31519 1.18999 0.92740 0.87624 0.94323 1.21812 1.02167 0.99344 0.97513 1.21313 0.95206 0.93969 0.99569 1.21571 1.00150 1.00877 0.90192 1.19685 1.01192 0.96999 0.93868 1.18312 0.77888 0.80719 0.88100 1.43518 1.52294 1.28809 1.14230 1.90814 1.57169 1.62231 1.36632 1.20459 0.99797 0.96857 0.96093 0.94237 0.88568 0.92353 0.86558 0.93688 0.89269 0.93705 0.95529 0.98699 0.92651 0.86245 0.85563 0.91361 0.91888 0.84764 0.81869 0.81126 0.74807 0.75257 0.85373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.22 9.17 71.98 0.66 -3.56 16 2 C 0.12 3.65 3.17 44.99 0.14 3.79 16 3 C -0.15 -4.70 8.47 71.98 0.61 -4.09 16 4 N -0.59 -24.23 2.39 -802.14 -1.91 -26.14 16 5 C 0.26 13.81 4.60 85.63 0.39 14.20 16 6 C -0.52 -29.35 7.83 25.60 0.20 -29.15 16 7 H 0.05 3.01 7.63 -2.91 -0.02 2.99 16 8 C 0.01 0.31 5.46 84.65 0.46 0.77 16 9 N -0.93 -55.78 13.29 21.45 0.28 -55.49 16 10 Si 0.96 44.76 29.54 68.60 2.03 46.78 16 11 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 12 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 13 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 14 C 0.50 19.97 7.67 87.66 0.67 20.64 16 15 O -0.60 -29.38 15.56 -3.05 -0.05 -29.43 16 16 C -0.13 -3.44 4.38 29.85 0.13 -3.31 16 17 C 0.08 2.29 4.03 71.98 0.29 2.58 16 18 O -0.32 -8.55 10.13 -92.56 -0.94 -9.49 16 19 C 0.11 2.66 6.68 22.47 0.15 2.81 16 20 C -0.19 -3.94 9.03 22.42 0.20 -3.74 16 21 C -0.08 -1.17 10.03 22.22 0.22 -0.95 16 22 C -0.11 -1.29 9.54 22.54 0.21 -1.08 16 23 C -0.11 -2.12 5.87 -20.10 -0.12 -2.24 16 24 C 0.56 10.57 8.05 86.79 0.70 11.26 16 25 N -0.82 -6.41 8.82 -175.59 -1.55 -7.96 16 26 O -0.59 -16.65 17.18 -3.89 -0.07 -16.72 16 27 C -0.11 -2.69 9.53 22.63 0.22 -2.47 16 28 H 0.04 1.29 6.66 -2.39 -0.02 1.27 16 29 H 0.10 1.90 8.14 -2.38 -0.02 1.88 16 30 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.12 2.60 5.77 -2.39 -0.01 2.58 16 32 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 34 H 0.04 1.71 6.92 -2.39 -0.02 1.69 16 35 H 0.03 1.43 6.43 -2.39 -0.02 1.42 16 36 H -0.01 -0.31 7.42 -2.39 -0.02 -0.33 16 37 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 38 H 0.12 2.82 7.79 -2.39 -0.02 2.80 16 39 H 0.13 2.75 7.79 -2.39 -0.02 2.74 16 40 H 0.07 1.91 7.63 -2.39 -0.02 1.89 16 41 H 0.06 1.84 7.60 -2.39 -0.02 1.82 16 42 H 0.13 2.88 6.28 -2.91 -0.02 2.86 16 43 H 0.16 1.31 8.06 -2.91 -0.02 1.28 16 44 H 0.17 0.40 6.40 -2.91 -0.02 0.38 16 45 H 0.42 0.28 6.86 -92.71 -0.64 -0.36 16 46 H 0.41 2.23 8.93 -92.71 -0.83 1.40 16 47 H 0.13 3.37 7.65 -2.91 -0.02 3.34 16 Total: -1.00 -81.90 388.42 2.49 -79.40 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -0.45 Total: 13.55 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: 5.15 Total: 5.50 kcal Atomic # 7 Polarization: -86.41 SS G_CDS: -3.18 Total: -89.59 kcal Atomic # 8 Polarization: -54.58 SS G_CDS: -1.05 Total: -55.63 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -81.90 2.49 -79.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081728622.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.415 kcal (2) G-P(sol) polarization free energy of solvation -81.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds