Wall clock time and date at job start Tue Mar 31 2020 18:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47144 * 2 1 4 4 N 1.46500 * 109.47018 * 119.99835 * 2 1 3 5 5 C 1.34780 * 120.00363 * 155.00071 * 4 2 1 6 6 O 1.21286 * 119.99282 * 0.02562 * 5 4 2 7 7 C 1.50694 * 120.00198 * 179.97438 * 5 4 2 8 8 N 1.46503 * 109.46994 * 179.97438 * 7 5 4 9 9 C 1.46492 * 120.00426 * 270.00314 * 8 7 5 10 10 C 1.34783 * 119.99585 * 90.00360 * 8 7 5 11 11 O 1.21284 * 119.99976 * 0.02562 * 10 8 7 12 12 C 1.50699 * 120.00059 * 179.97438 * 10 8 7 13 13 C 1.50699 * 109.47151 * 180.02562 * 12 10 8 14 14 C 1.38328 * 119.96224 * 270.02423 * 13 12 10 15 15 C 1.38281 * 120.13505 * 179.97438 * 14 13 12 16 16 C 1.38120 * 120.06679 * 359.68445 * 15 14 13 17 17 C 1.38852 * 119.93490 * 0.58817 * 16 15 14 18 18 O 1.35752 * 120.07221 * 179.70368 * 17 16 15 19 19 C 1.34829 * 116.99954 * 354.17311 * 18 17 16 20 20 H 1.07998 * 119.99999 * 5.03596 * 19 18 17 21 21 C 1.38656 * 119.99670 * 185.03445 * 19 18 17 22 22 N 1.31550 * 120.00275 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99668 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47063 * 60.00398 * 23 21 19 25 25 H 1.48498 * 109.47240 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47319 * 300.00306 * 23 21 19 27 27 C 1.38073 * 119.96539 * 89.99818 * 13 12 10 28 28 H 1.08995 * 109.46846 * 300.00594 * 1 2 3 29 29 H 1.09001 * 109.46669 * 60.00419 * 1 2 3 30 30 H 1.08994 * 109.46592 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47185 * 239.99828 * 2 1 3 32 32 H 1.08996 * 109.47220 * 59.99849 * 3 2 1 33 33 H 1.09001 * 109.46845 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.46996 * 299.99381 * 3 2 1 35 35 H 0.97003 * 119.99670 * 334.99901 * 4 2 1 36 36 H 1.09002 * 109.46637 * 60.00726 * 7 5 4 37 37 H 1.08991 * 109.47452 * 300.00444 * 7 5 4 38 38 H 1.08998 * 109.47741 * 270.00060 * 9 8 7 39 39 H 1.09001 * 109.47144 * 30.00541 * 9 8 7 40 40 H 1.09003 * 109.47209 * 149.99639 * 9 8 7 41 41 H 1.09004 * 109.46756 * 60.00007 * 12 10 8 42 42 H 1.08998 * 109.46908 * 300.00650 * 12 10 8 43 43 H 1.08001 * 119.93314 * 359.97438 * 14 13 12 44 44 H 1.07993 * 119.96315 * 179.97438 * 15 14 13 45 45 H 1.08001 * 120.03256 * 180.31909 * 16 15 14 46 46 H 0.96999 * 119.99936 * 179.97438 * 22 21 19 47 47 H 1.07996 * 120.03547 * 0.04988 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 3.2403 -1.2592 1.1945 6 8 3.9359 -1.1987 0.2028 7 6 3.7428 -1.9690 2.4252 8 7 5.0855 -2.4968 2.1705 9 6 5.2509 -3.8457 1.6238 10 6 6.1687 -1.7410 2.4392 11 8 6.0318 -0.6244 2.8923 12 6 7.5500 -2.2840 2.1778 13 6 8.5771 -1.2498 2.5606 14 6 9.0126 -0.3291 1.6246 15 6 9.9545 0.6218 1.9722 16 6 10.4585 0.6589 3.2576 17 6 10.0276 -0.2674 4.1979 18 8 10.5257 -0.2372 5.4604 19 6 11.5223 0.6375 5.7045 20 1 11.8334 1.3297 4.9361 21 6 12.1476 0.6482 6.9420 22 7 11.7688 -0.1953 7.8777 23 14 13.5288 1.8596 7.2799 24 1 13.0207 3.2461 7.1227 25 1 14.0267 1.6686 8.6659 26 1 14.6374 1.6268 6.3197 27 6 9.0820 -1.2219 3.8454 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3632 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.6767 1.9564 0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6768 1.9563 -0.8901 35 1 1.4621 -0.7386 1.9895 36 1 3.0703 -2.7910 2.6704 37 1 3.7795 -1.2684 3.2592 38 1 5.3224 -4.5630 2.4414 39 1 4.3929 -4.0920 0.9983 40 1 6.1606 -3.8860 1.0246 41 1 7.6519 -2.5234 1.1192 42 1 7.7042 -3.1856 2.7706 43 1 8.6161 -0.3530 0.6203 44 1 10.2928 1.3390 1.2391 45 1 11.1904 1.4051 3.5298 46 1 12.2066 -0.1880 8.7433 47 1 8.7418 -1.9412 4.5756 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089603715.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:44 Heat of formation + Delta-G solvation = -72.084858 kcal Electronic energy + Delta-G solvation = -28217.658097 eV Core-core repulsion = 24173.504440 eV Total energy + Delta-G solvation = -4044.153657 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.47962 -39.42247 -38.65311 -36.54435 -36.17883 -35.24930 -32.43617 -32.14813 -31.77991 -29.32312 -28.76925 -27.57270 -27.11514 -25.88921 -25.09069 -22.24481 -21.53874 -21.00366 -20.64299 -19.20499 -17.58759 -17.54129 -17.07235 -16.91471 -16.61643 -15.72557 -15.38692 -15.21169 -14.92311 -14.48281 -14.39546 -14.31938 -13.76955 -13.62115 -13.44901 -13.30916 -13.20351 -12.99655 -12.73956 -12.66421 -12.53962 -12.41896 -12.34483 -12.03762 -11.76250 -11.71121 -11.45317 -11.30609 -11.18316 -10.74617 -10.68325 -10.52321 -10.39425 -10.23056 -9.68500 -9.37551 -9.25045 -8.76151 -8.74785 -7.96028 -7.11478 -6.36183 -3.94947 2.16822 2.44300 2.49458 2.59852 2.90351 3.18358 3.18831 3.21758 3.22158 4.03836 4.40727 4.50685 4.63639 4.67593 4.77110 4.86856 4.91906 4.96726 5.07867 5.19082 5.21443 5.25500 5.28047 5.33528 5.41442 5.43672 5.50109 5.54000 5.58670 5.74125 5.80180 5.85149 5.98486 6.05431 6.20918 6.26192 6.29033 6.44102 6.75760 7.02211 7.16647 7.22582 7.28505 7.37899 7.47624 7.53487 7.93332 8.01989 8.09207 8.30849 9.09670 9.81575 10.82212 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.018517 B = 0.002211 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.751562 B =12662.796355 C =12996.956742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.137 3.863 3 C -0.165 4.165 4 N -0.730 5.730 5 C 0.497 3.503 6 O -0.527 6.527 7 C 0.097 3.903 8 N -0.609 5.609 9 C 0.083 3.917 10 C 0.523 3.477 11 O -0.516 6.516 12 C -0.090 4.090 13 C -0.033 4.033 14 C -0.194 4.194 15 C -0.075 4.075 16 C -0.230 4.230 17 C 0.154 3.846 18 O -0.181 6.181 19 C -0.390 4.390 20 H 0.090 0.910 21 C 0.038 3.962 22 N -0.866 5.866 23 Si 0.940 3.060 24 H -0.271 1.271 25 H -0.279 1.279 26 H -0.270 1.270 27 C -0.174 4.174 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.399 0.601 36 H 0.105 0.895 37 H 0.114 0.886 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.099 0.901 42 H 0.100 0.900 43 H 0.103 0.897 44 H 0.107 0.893 45 H 0.126 0.874 46 H 0.269 0.731 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.372 -6.112 -14.145 26.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.033 3.967 3 C -0.224 4.224 4 N -0.384 5.384 5 C 0.282 3.718 6 O -0.402 6.402 7 C -0.030 4.030 8 N -0.344 5.344 9 C -0.060 4.060 10 C 0.311 3.689 11 O -0.389 6.389 12 C -0.129 4.129 13 C -0.034 4.034 14 C -0.213 4.213 15 C -0.094 4.094 16 C -0.250 4.250 17 C 0.101 3.899 18 O -0.084 6.084 19 C -0.466 4.466 20 H 0.108 0.892 21 C -0.166 4.166 22 N -0.501 5.501 23 Si 0.765 3.235 24 H -0.196 1.196 25 H -0.204 1.204 26 H -0.196 1.196 27 C -0.193 4.193 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.104 0.896 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.233 0.767 36 H 0.123 0.877 37 H 0.132 0.868 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.117 0.883 42 H 0.118 0.882 43 H 0.121 0.879 44 H 0.125 0.875 45 H 0.143 0.857 46 H 0.079 0.921 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -20.888 -5.647 -14.169 25.864 hybrid contribution 0.285 0.668 0.437 0.848 sum -20.603 -4.979 -13.731 25.255 Atomic orbital electron populations 1.22073 0.94154 1.02489 1.02995 1.20912 0.93789 0.93192 0.88848 1.22193 1.02520 0.95655 1.01997 1.46123 1.18076 1.57376 1.16838 1.21377 0.81121 0.78785 0.90488 1.90706 1.55528 1.59026 1.34923 1.21227 0.85318 1.00129 0.96300 1.47474 1.04494 1.16474 1.66004 1.21796 1.03311 0.82243 0.98646 1.20790 0.86099 0.85152 0.76822 1.90742 1.86313 1.18981 1.42880 1.20600 0.89971 0.98952 1.03412 1.18682 0.95451 0.95822 0.93431 1.20379 1.02846 0.99328 0.98718 1.20677 0.96062 0.97165 0.95455 1.21165 1.06478 1.03183 0.94133 1.19269 0.92448 0.92675 0.85520 1.83974 1.46933 1.55625 1.21913 1.21262 1.11506 1.13943 0.99908 0.89228 1.25261 0.98546 0.98014 0.94756 1.70030 1.40605 1.35033 1.04459 0.85797 0.80028 0.79746 0.77935 1.19570 1.20357 1.19565 1.19933 1.02038 1.01589 0.95775 0.92000 0.90962 0.92051 0.89614 0.92412 0.91868 0.91741 0.76688 0.87678 0.86785 0.92254 0.91393 0.90485 0.88256 0.88225 0.87926 0.87511 0.85656 0.92120 0.86843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.76 9.38 37.16 0.35 -0.41 16 2 C 0.14 1.08 3.18 -67.93 -0.22 0.86 16 3 C -0.17 -1.46 9.48 37.16 0.35 -1.11 16 4 N -0.73 -5.84 5.08 -53.80 -0.27 -6.11 16 5 C 0.50 5.64 7.86 -10.99 -0.09 5.55 16 6 O -0.53 -8.21 16.09 5.55 0.09 -8.12 16 7 C 0.10 0.95 5.89 -5.20 -0.03 0.92 16 8 N -0.61 -7.24 2.36 -182.96 -0.43 -7.67 16 9 C 0.08 0.66 10.24 59.84 0.61 1.27 16 10 C 0.52 8.39 7.67 -10.98 -0.08 8.31 16 11 O -0.52 -10.63 15.61 5.55 0.09 -10.54 16 12 C -0.09 -1.33 4.38 -29.04 -0.13 -1.45 16 13 C -0.03 -0.65 4.37 -104.65 -0.46 -1.11 16 14 C -0.19 -3.80 9.70 -39.53 -0.38 -4.18 16 15 C -0.08 -1.54 10.04 -39.61 -0.40 -1.94 16 16 C -0.23 -5.41 9.17 -39.40 -0.36 -5.77 16 17 C 0.15 3.98 6.65 -39.11 -0.26 3.72 16 18 O -0.18 -5.39 9.76 0.05 0.00 -5.39 16 19 C -0.39 -11.33 9.49 30.89 0.29 -11.04 16 20 H 0.09 2.42 5.21 -52.49 -0.27 2.14 16 21 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 22 N -0.87 -26.07 13.67 55.48 0.76 -25.31 16 23 Si 0.94 21.19 29.55 -169.99 -5.02 16.17 16 24 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 25 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 26 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 27 C -0.17 -3.96 9.65 -39.39 -0.38 -4.34 16 28 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.09 0.82 7.58 -51.93 -0.39 0.43 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.40 1.98 8.60 -40.82 -0.35 1.63 16 36 H 0.11 0.58 8.07 -51.93 -0.42 0.16 16 37 H 0.11 1.21 7.42 -51.93 -0.39 0.82 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.07 0.46 8.07 -51.93 -0.42 0.04 16 40 H 0.08 0.58 6.44 -51.93 -0.33 0.25 16 41 H 0.10 1.23 7.34 -51.93 -0.38 0.85 16 42 H 0.10 1.23 8.05 -51.93 -0.42 0.81 16 43 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 44 H 0.11 1.85 8.06 -52.49 -0.42 1.43 16 45 H 0.13 2.91 5.64 -52.49 -0.30 2.61 16 46 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 47 H 0.11 2.48 8.06 -52.49 -0.42 2.06 16 LS Contribution 397.99 15.07 6.00 6.00 Total: -1.00 -38.73 397.99 -7.10 -45.84 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -7.03 Total: 4.89 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: -1.27 Total: -9.74 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: 0.05 Total: -39.10 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: 0.18 Total: -24.06 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -38.73 -7.10 -45.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089603715.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.249 kcal (2) G-P(sol) polarization free energy of solvation -38.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds