Wall clock time and date at job start Tue Mar 31 2020 18:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47144 * 2 1 4 4 N 1.46500 * 109.47018 * 119.99835 * 2 1 3 5 5 C 1.34780 * 120.00363 * 155.00071 * 4 2 1 6 6 O 1.21286 * 119.99282 * 0.02562 * 5 4 2 7 7 C 1.50694 * 120.00198 * 179.97438 * 5 4 2 8 8 N 1.46503 * 109.46994 * 179.97438 * 7 5 4 9 9 C 1.46492 * 120.00426 * 270.00314 * 8 7 5 10 10 C 1.34783 * 119.99585 * 90.00360 * 8 7 5 11 11 O 1.21284 * 119.99976 * 0.02562 * 10 8 7 12 12 C 1.50699 * 120.00059 * 179.97438 * 10 8 7 13 13 C 1.50699 * 109.47151 * 180.02562 * 12 10 8 14 14 C 1.38328 * 119.96224 * 270.02423 * 13 12 10 15 15 C 1.38281 * 120.13505 * 179.97438 * 14 13 12 16 16 C 1.38120 * 120.06679 * 359.68445 * 15 14 13 17 17 C 1.38852 * 119.93490 * 0.58817 * 16 15 14 18 18 O 1.35752 * 120.07221 * 179.70368 * 17 16 15 19 19 C 1.34829 * 116.99954 * 354.17311 * 18 17 16 20 20 H 1.07998 * 119.99999 * 5.03596 * 19 18 17 21 21 C 1.38656 * 119.99670 * 185.03445 * 19 18 17 22 22 N 1.31550 * 120.00275 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99668 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47063 * 60.00398 * 23 21 19 25 25 H 1.48498 * 109.47240 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47319 * 300.00306 * 23 21 19 27 27 C 1.38073 * 119.96539 * 89.99818 * 13 12 10 28 28 H 1.08995 * 109.46846 * 300.00594 * 1 2 3 29 29 H 1.09001 * 109.46669 * 60.00419 * 1 2 3 30 30 H 1.08994 * 109.46592 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47185 * 239.99828 * 2 1 3 32 32 H 1.08996 * 109.47220 * 59.99849 * 3 2 1 33 33 H 1.09001 * 109.46845 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.46996 * 299.99381 * 3 2 1 35 35 H 0.97003 * 119.99670 * 334.99901 * 4 2 1 36 36 H 1.09002 * 109.46637 * 60.00726 * 7 5 4 37 37 H 1.08991 * 109.47452 * 300.00444 * 7 5 4 38 38 H 1.08998 * 109.47741 * 270.00060 * 9 8 7 39 39 H 1.09001 * 109.47144 * 30.00541 * 9 8 7 40 40 H 1.09003 * 109.47209 * 149.99639 * 9 8 7 41 41 H 1.09004 * 109.46756 * 60.00007 * 12 10 8 42 42 H 1.08998 * 109.46908 * 300.00650 * 12 10 8 43 43 H 1.08001 * 119.93314 * 359.97438 * 14 13 12 44 44 H 1.07993 * 119.96315 * 179.97438 * 15 14 13 45 45 H 1.08001 * 120.03256 * 180.31909 * 16 15 14 46 46 H 0.96999 * 119.99936 * 179.97438 * 22 21 19 47 47 H 1.07996 * 120.03547 * 0.04988 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 3.2403 -1.2592 1.1945 6 8 3.9359 -1.1987 0.2028 7 6 3.7428 -1.9690 2.4252 8 7 5.0855 -2.4968 2.1705 9 6 5.2509 -3.8457 1.6238 10 6 6.1687 -1.7410 2.4392 11 8 6.0318 -0.6244 2.8923 12 6 7.5500 -2.2840 2.1778 13 6 8.5771 -1.2498 2.5606 14 6 9.0126 -0.3291 1.6246 15 6 9.9545 0.6218 1.9722 16 6 10.4585 0.6589 3.2576 17 6 10.0276 -0.2674 4.1979 18 8 10.5257 -0.2372 5.4604 19 6 11.5223 0.6375 5.7045 20 1 11.8334 1.3297 4.9361 21 6 12.1476 0.6482 6.9420 22 7 11.7688 -0.1953 7.8777 23 14 13.5288 1.8596 7.2799 24 1 13.0207 3.2461 7.1227 25 1 14.0267 1.6686 8.6659 26 1 14.6374 1.6268 6.3197 27 6 9.0820 -1.2219 3.8454 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3632 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.6767 1.9564 0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6768 1.9563 -0.8901 35 1 1.4621 -0.7386 1.9895 36 1 3.0703 -2.7910 2.6704 37 1 3.7795 -1.2684 3.2592 38 1 5.3224 -4.5630 2.4414 39 1 4.3929 -4.0920 0.9983 40 1 6.1606 -3.8860 1.0246 41 1 7.6519 -2.5234 1.1192 42 1 7.7042 -3.1856 2.7706 43 1 8.6161 -0.3530 0.6203 44 1 10.2928 1.3390 1.2391 45 1 11.1904 1.4051 3.5298 46 1 12.2066 -0.1880 8.7433 47 1 8.7418 -1.9412 4.5756 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089603715.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:43 Heat of formation + Delta-G solvation = -99.654485 kcal Electronic energy + Delta-G solvation = -28218.853605 eV Core-core repulsion = 24173.504440 eV Total energy + Delta-G solvation = -4045.349166 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.51697 -40.80129 -40.12682 -38.23737 -37.09813 -36.27783 -34.34717 -33.60474 -32.74118 -30.95644 -29.89950 -28.30043 -28.13357 -27.34417 -26.71259 -23.38463 -23.11605 -22.35553 -21.57491 -20.37966 -19.41914 -18.74806 -18.40724 -18.15134 -17.52287 -16.87618 -16.61085 -16.58868 -16.12445 -16.03525 -15.91290 -15.50178 -15.14722 -15.04718 -14.77230 -14.39961 -14.31029 -14.05756 -13.92969 -13.80874 -13.58976 -13.33049 -13.18258 -13.10716 -12.95396 -12.87513 -12.81950 -12.46750 -12.36460 -12.31813 -12.24303 -12.12634 -11.95558 -11.21430 -11.17269 -10.97266 -10.78638 -10.13866 -9.69526 -9.65184 -8.99411 -8.46457 -6.15016 0.50141 0.73671 1.34088 1.45333 1.50699 1.51560 1.62216 1.90288 2.18175 2.39679 2.82942 3.15523 3.42179 3.70264 3.76205 3.89597 3.98109 4.07821 4.11151 4.25016 4.26709 4.29389 4.31965 4.39690 4.41132 4.56101 4.58385 4.68820 4.71541 4.71600 4.79123 4.91212 4.97025 4.99107 5.04940 5.12634 5.23440 5.28654 5.29303 5.41237 5.55046 5.63158 5.70929 5.74182 6.02669 6.18049 6.30959 6.53982 6.97700 7.15127 7.26182 7.78574 8.76727 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.018517 B = 0.002211 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.751562 B =12662.796355 C =12996.956742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.134 3.866 3 C -0.163 4.163 4 N -0.716 5.716 5 C 0.493 3.507 6 O -0.576 6.576 7 C 0.093 3.907 8 N -0.603 5.603 9 C 0.073 3.927 10 C 0.516 3.484 11 O -0.577 6.577 12 C -0.088 4.088 13 C -0.025 4.025 14 C -0.185 4.185 15 C -0.074 4.074 16 C -0.245 4.245 17 C 0.114 3.886 18 O -0.231 6.231 19 C -0.416 4.416 20 H 0.099 0.901 21 C -0.024 4.024 22 N -0.920 5.920 23 Si 1.020 2.980 24 H -0.259 1.259 25 H -0.269 1.269 26 H -0.256 1.256 27 C -0.189 4.189 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.023 0.977 34 H 0.079 0.921 35 H 0.416 0.584 36 H 0.154 0.846 37 H 0.103 0.897 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.132 0.868 42 H 0.127 0.873 43 H 0.136 0.864 44 H 0.143 0.857 45 H 0.120 0.880 46 H 0.273 0.727 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.117 -6.756 -16.264 29.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.030 3.970 3 C -0.221 4.221 4 N -0.370 5.370 5 C 0.279 3.721 6 O -0.455 6.455 7 C -0.033 4.033 8 N -0.335 5.335 9 C -0.068 4.068 10 C 0.306 3.694 11 O -0.455 6.455 12 C -0.127 4.127 13 C -0.026 4.026 14 C -0.203 4.203 15 C -0.092 4.092 16 C -0.265 4.265 17 C 0.064 3.936 18 O -0.138 6.138 19 C -0.492 4.492 20 H 0.117 0.883 21 C -0.221 4.221 22 N -0.559 5.559 23 Si 0.839 3.161 24 H -0.184 1.184 25 H -0.194 1.194 26 H -0.181 1.181 27 C -0.208 4.208 28 H 0.092 0.908 29 H 0.100 0.900 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.042 0.958 34 H 0.098 0.902 35 H 0.253 0.747 36 H 0.172 0.828 37 H 0.121 0.879 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.101 0.899 41 H 0.150 0.850 42 H 0.145 0.855 43 H 0.154 0.846 44 H 0.161 0.839 45 H 0.138 0.862 46 H 0.082 0.918 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -22.723 -6.340 -16.333 28.693 hybrid contribution 0.567 0.767 0.826 1.261 sum -22.156 -5.574 -15.508 27.612 Atomic orbital electron populations 1.22005 0.91167 1.03462 1.04056 1.20979 0.95983 0.92046 0.87998 1.22175 0.99861 0.96867 1.03186 1.46054 1.17298 1.55967 1.17642 1.21663 0.81538 0.78651 0.90219 1.90680 1.56993 1.61085 1.36696 1.21488 0.85134 1.01606 0.95082 1.47536 1.04311 1.17313 1.64373 1.22123 1.04457 0.80364 0.99853 1.20950 0.87384 0.84681 0.76401 1.90723 1.87227 1.21545 1.46036 1.20704 0.88017 0.98169 1.05844 1.19172 0.95183 0.96398 0.91817 1.20913 1.01321 0.97963 1.00117 1.21092 0.95503 0.97850 0.94706 1.21280 1.07009 1.02904 0.95261 1.19848 0.93901 0.94638 0.85239 1.83935 1.48475 1.57150 1.24273 1.21780 1.12035 1.14515 1.00831 0.88337 1.26610 1.01305 1.00155 0.94029 1.70178 1.42814 1.37666 1.05209 0.84639 0.76246 0.76983 0.78259 1.18392 1.19371 1.18053 1.20189 1.01912 1.01316 0.97382 0.90830 0.90023 0.91112 0.91516 0.91678 0.95813 0.90168 0.74716 0.82816 0.87892 0.89811 0.89807 0.89869 0.84975 0.85544 0.84638 0.83896 0.86244 0.91813 0.87101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.38 71.98 0.68 -0.35 16 2 C 0.13 1.95 3.18 44.99 0.14 2.09 16 3 C -0.16 -2.80 9.48 71.98 0.68 -2.12 16 4 N -0.72 -10.36 5.08 -442.52 -2.25 -12.60 16 5 C 0.49 10.62 7.86 87.65 0.69 11.31 16 6 O -0.58 -17.71 16.09 -3.05 -0.05 -17.76 16 7 C 0.09 1.63 5.89 85.63 0.50 2.14 16 8 N -0.60 -12.97 2.36 -851.15 -2.01 -14.99 16 9 C 0.07 0.90 10.24 127.77 1.31 2.21 16 10 C 0.52 15.93 7.67 87.66 0.67 16.60 16 11 O -0.58 -24.00 15.61 -3.04 -0.05 -24.04 16 12 C -0.09 -2.40 4.38 29.10 0.13 -2.27 16 13 C -0.03 -0.96 4.37 -19.88 -0.09 -1.05 16 14 C -0.18 -6.86 9.70 22.30 0.22 -6.65 16 15 C -0.07 -2.92 10.04 22.25 0.22 -2.69 16 16 C -0.25 -11.83 9.17 22.39 0.21 -11.63 16 17 C 0.11 6.18 6.65 22.58 0.15 6.33 16 18 O -0.23 -14.75 9.76 -22.74 -0.22 -14.98 16 19 C -0.42 -25.42 9.49 67.92 0.64 -24.78 16 20 H 0.10 5.57 5.21 -2.91 -0.02 5.56 16 21 C -0.02 -1.40 5.49 84.83 0.47 -0.93 16 22 N -0.92 -58.14 13.67 21.61 0.30 -57.85 16 23 Si 1.02 44.48 29.55 68.60 2.03 46.50 16 24 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 25 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 26 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 27 C -0.19 -8.86 9.65 22.39 0.22 -8.64 16 28 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.07 1.25 7.58 -2.39 -0.02 1.23 16 32 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.42 3.16 8.60 -92.71 -0.80 2.36 16 36 H 0.15 1.12 8.07 -2.39 -0.02 1.10 16 37 H 0.10 2.10 7.42 -2.39 -0.02 2.09 16 38 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.08 0.81 8.07 -2.39 -0.02 0.80 16 40 H 0.08 0.95 6.44 -2.39 -0.02 0.93 16 41 H 0.13 2.74 7.34 -2.38 -0.02 2.73 16 42 H 0.13 2.76 8.05 -2.39 -0.02 2.75 16 43 H 0.14 4.20 8.06 -2.91 -0.02 4.17 16 44 H 0.14 4.56 8.06 -2.91 -0.02 4.54 16 45 H 0.12 5.76 5.64 -2.91 -0.02 5.75 16 46 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 47 H 0.11 5.10 8.06 -2.91 -0.02 5.07 16 Total: -1.00 -92.67 397.99 4.77 -87.90 By element: Atomic # 1 Polarization: 28.04 SS G_CDS: 0.19 Total: 28.23 kcal Atomic # 6 Polarization: -27.26 SS G_CDS: 6.84 Total: -20.42 kcal Atomic # 7 Polarization: -81.48 SS G_CDS: -3.96 Total: -85.44 kcal Atomic # 8 Polarization: -56.46 SS G_CDS: -0.32 Total: -56.78 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Total: -92.67 4.77 -87.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089603715.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.755 kcal (2) G-P(sol) polarization free energy of solvation -92.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds