Wall clock time and date at job start Tue Mar 31 2020 17:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46995 * 2 1 4 4 C 1.50700 * 109.46849 * 119.99736 * 2 1 3 5 5 O 1.21277 * 120.00195 * 0.02562 * 4 2 1 6 6 N 1.34783 * 119.99813 * 180.02562 * 4 2 1 7 7 C 1.46500 * 120.00093 * 180.02562 * 6 4 2 8 8 C 1.52996 * 109.47128 * 179.97438 * 7 6 4 9 9 N 1.46500 * 109.47128 * 179.97438 * 8 7 6 10 10 C 1.34774 * 120.00119 * 180.02562 * 9 8 7 11 11 O 1.21282 * 120.00304 * 0.02562 * 10 9 8 12 12 C 1.50704 * 120.00135 * 180.02562 * 10 9 8 13 13 C 1.50699 * 109.47208 * 180.02562 * 12 10 9 14 14 C 1.38328 * 119.96230 * 269.97915 * 13 12 10 15 15 C 1.38281 * 120.13505 * 180.02562 * 14 13 12 16 16 C 1.38120 * 120.06679 * 359.68445 * 15 14 13 17 17 C 1.38852 * 119.93490 * 0.58817 * 16 15 14 18 18 O 1.35752 * 120.07221 * 179.70368 * 17 16 15 19 19 C 1.34829 * 116.99954 * 354.17311 * 18 17 16 20 20 H 1.07998 * 119.99999 * 5.03596 * 19 18 17 21 21 C 1.38656 * 119.99670 * 185.03445 * 19 18 17 22 22 N 1.31550 * 120.00275 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99668 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46814 * 90.00164 * 23 21 19 25 25 H 1.48501 * 109.47378 * 210.00272 * 23 21 19 26 26 H 1.48503 * 109.47143 * 330.00397 * 23 21 19 27 27 C 1.38073 * 119.96534 * 89.99715 * 13 12 10 28 28 H 1.08998 * 109.47635 * 299.99651 * 1 2 3 29 29 H 1.09007 * 109.46996 * 60.00441 * 1 2 3 30 30 H 1.09002 * 109.47193 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47635 * 240.00349 * 2 1 3 32 32 H 1.09003 * 109.47032 * 59.99971 * 3 2 1 33 33 H 1.09001 * 109.47118 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47346 * 300.00363 * 3 2 1 35 35 H 0.97004 * 119.99718 * 0.02562 * 6 4 2 36 36 H 1.09002 * 109.46490 * 60.00223 * 7 6 4 37 37 H 1.08998 * 109.47288 * 300.00660 * 7 6 4 38 38 H 1.09008 * 109.46644 * 60.00325 * 8 7 6 39 39 H 1.08998 * 109.47635 * 300.00520 * 8 7 6 40 40 H 0.97001 * 119.99420 * 0.02562 * 9 8 7 41 41 H 1.09002 * 109.46571 * 59.99894 * 12 10 9 42 42 H 1.08992 * 109.46782 * 300.00158 * 12 10 9 43 43 H 1.08001 * 119.93314 * 0.02562 * 14 13 12 44 44 H 1.07993 * 119.96315 * 179.97438 * 15 14 13 45 45 H 1.08001 * 120.03256 * 180.31909 * 16 15 14 46 46 H 0.96999 * 119.99936 * 179.97438 * 22 21 19 47 47 H 1.07996 * 120.03547 * 0.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0322 -0.7104 1.2305 5 8 1.2441 -1.1716 2.0286 6 7 3.3574 -0.8331 1.4441 7 6 3.8457 -1.5241 2.6400 8 6 5.3757 -1.5240 2.6401 9 7 5.8640 -2.2145 3.8363 10 6 7.1890 -2.3371 4.0499 11 8 7.9772 -1.8754 3.2521 12 6 7.6914 -3.0479 5.2802 13 6 9.1984 -3.0466 5.2810 14 6 9.8904 -4.0837 4.6818 15 6 11.2732 -4.0864 4.6809 16 6 11.9676 -3.0495 5.2729 17 6 11.2759 -2.0100 5.8802 18 8 11.9556 -0.9926 6.4682 19 6 13.2971 -1.1104 6.5346 20 1 13.7900 -1.9454 6.0588 21 6 14.0437 -0.1597 7.2136 22 7 13.4433 0.8571 7.7934 23 14 15.9023 -0.3233 7.3061 24 1 16.5190 0.3779 6.1515 25 1 16.3902 0.2823 8.5712 26 1 16.2751 -1.7603 7.2692 27 6 9.8868 -2.0105 5.8800 28 1 -0.3634 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8934 -0.5137 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 3.1299 1.4425 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 3.9877 -0.4638 0.8059 36 1 3.4828 -2.5519 2.6392 37 1 3.4818 -1.0110 3.5302 38 1 5.7389 -0.4962 2.6405 39 1 5.7391 -2.0373 1.7499 40 1 5.2336 -2.5834 4.4746 41 1 7.3285 -4.0758 5.2794 42 1 7.3275 -2.5348 6.1702 43 1 9.3497 -4.8929 4.2137 44 1 11.8107 -4.8976 4.2126 45 1 13.0476 -3.0496 5.2674 46 1 13.9657 1.5220 8.2687 47 1 9.3459 -1.2015 6.3483 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089658241.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:26 Heat of formation + Delta-G solvation = -90.951258 kcal Electronic energy + Delta-G solvation = -26923.694904 eV Core-core repulsion = 22878.723138 eV Total energy + Delta-G solvation = -4044.971766 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.38294 -39.80984 -38.76982 -36.63714 -36.07590 -34.94423 -34.10742 -32.38672 -31.99822 -29.68648 -29.04812 -27.57488 -26.89917 -25.22897 -24.24876 -22.65016 -21.67637 -21.28307 -20.35917 -20.16787 -17.84096 -17.55349 -17.11320 -16.92188 -16.37455 -16.22714 -15.66397 -15.54718 -15.12216 -14.83848 -14.40258 -14.36484 -14.27750 -13.86155 -13.75407 -13.42817 -13.36334 -13.18333 -12.79036 -12.62356 -12.44113 -12.40205 -12.21213 -12.16814 -11.76516 -11.64639 -11.55720 -11.48849 -11.24355 -10.80116 -10.75880 -10.58684 -10.41849 -10.22283 -9.80481 -9.57221 -9.29936 -9.25291 -8.79918 -8.03091 -7.17766 -6.40339 -3.99327 2.09638 2.22349 2.42063 2.53349 2.72055 3.15411 3.16132 3.21033 3.35224 4.00182 4.14680 4.28200 4.41234 4.46203 4.57521 4.66010 4.87006 4.90006 5.02739 5.11854 5.12745 5.14561 5.22348 5.25796 5.36560 5.44554 5.47335 5.51889 5.56332 5.65410 5.69292 5.78191 5.79069 5.91686 5.96968 6.21463 6.23112 6.37754 6.69591 6.95702 6.99666 7.11332 7.30201 7.35220 7.41127 7.48253 7.77692 7.86899 8.04781 8.24616 9.05479 9.76591 10.77966 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020263 B = 0.001675 C = 0.001596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.467967 B =16709.604840 C =17535.394219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.115 4.115 3 C -0.146 4.146 4 C 0.518 3.482 5 O -0.538 6.538 6 N -0.728 5.728 7 C 0.108 3.892 8 C 0.109 3.891 9 N -0.737 5.737 10 C 0.516 3.484 11 O -0.516 6.516 12 C -0.093 4.093 13 C -0.035 4.035 14 C -0.196 4.196 15 C -0.075 4.075 16 C -0.230 4.230 17 C 0.154 3.846 18 O -0.180 6.180 19 C -0.391 4.391 20 H 0.091 0.909 21 C 0.038 3.962 22 N -0.864 5.864 23 Si 0.941 3.059 24 H -0.274 1.274 25 H -0.278 1.278 26 H -0.268 1.268 27 C -0.174 4.174 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.098 0.902 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.404 0.596 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.402 0.598 41 H 0.099 0.901 42 H 0.101 0.899 43 H 0.102 0.898 44 H 0.107 0.893 45 H 0.126 0.874 46 H 0.269 0.731 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.966 -4.396 -13.273 26.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.136 4.136 3 C -0.204 4.204 4 C 0.304 3.696 5 O -0.414 6.414 6 N -0.381 5.381 7 C -0.016 4.016 8 C -0.015 4.015 9 N -0.393 5.393 10 C 0.302 3.698 11 O -0.390 6.390 12 C -0.132 4.132 13 C -0.035 4.035 14 C -0.215 4.215 15 C -0.093 4.093 16 C -0.250 4.250 17 C 0.101 3.899 18 O -0.084 6.084 19 C -0.467 4.467 20 H 0.109 0.891 21 C -0.165 4.165 22 N -0.500 5.500 23 Si 0.765 3.235 24 H -0.199 1.199 25 H -0.203 1.203 26 H -0.192 1.192 27 C -0.193 4.193 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.116 0.884 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.239 0.761 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.236 0.764 41 H 0.117 0.883 42 H 0.119 0.881 43 H 0.121 0.879 44 H 0.125 0.875 45 H 0.144 0.856 46 H 0.079 0.921 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -21.937 -3.964 -13.028 25.820 hybrid contribution 1.039 -0.107 -0.026 1.044 sum -20.899 -4.071 -13.054 24.975 Atomic orbital electron populations 1.21622 0.92328 1.02901 1.02261 1.21318 0.98533 0.97381 0.96372 1.21815 1.01331 0.94032 1.03205 1.20758 0.81748 0.79319 0.87766 1.90714 1.55248 1.48360 1.47096 1.45846 1.07506 1.59248 1.25522 1.21439 0.93092 0.98332 0.88732 1.21343 0.92097 0.98717 0.89359 1.45831 1.07614 1.60466 1.25359 1.20802 0.81272 0.79730 0.87959 1.90769 1.54913 1.46770 1.46519 1.20581 0.94658 1.01720 0.96291 1.18655 0.91880 0.94879 0.98113 1.20348 0.94076 1.00116 1.06984 1.20678 0.93846 0.97140 0.97673 1.21175 1.00565 0.96985 1.06230 1.19280 0.91495 0.87733 0.91410 1.83975 1.20887 1.36139 1.67372 1.21317 0.78645 1.11426 1.35324 0.89131 1.25271 1.00412 0.95110 0.95745 1.70039 1.36204 1.11355 1.32372 0.85721 0.80785 0.78844 0.78117 1.19933 1.20300 1.19222 1.19944 0.91581 1.00219 1.07574 0.91858 0.91912 0.91935 0.88355 0.91913 0.91990 0.91176 0.76124 0.90740 0.90659 0.90814 0.90927 0.76426 0.88254 0.88100 0.87942 0.87482 0.85624 0.92116 0.86830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.79 8.48 37.16 0.32 -0.48 16 2 C -0.11 -0.62 3.26 -91.77 -0.30 -0.92 16 3 C -0.15 -0.61 9.09 37.16 0.34 -0.28 16 4 C 0.52 4.30 7.15 -10.98 -0.08 4.22 16 5 O -0.54 -6.62 15.98 5.56 0.09 -6.53 16 6 N -0.73 -4.72 5.45 -60.29 -0.33 -5.04 16 7 C 0.11 0.76 5.79 -4.04 -0.02 0.74 16 8 C 0.11 0.90 5.79 -4.04 -0.02 0.88 16 9 N -0.74 -6.81 5.56 -60.29 -0.33 -7.15 16 10 C 0.52 7.07 7.82 -10.98 -0.09 6.99 16 11 O -0.52 -9.69 16.03 5.56 0.09 -9.60 16 12 C -0.09 -1.18 5.83 -29.03 -0.17 -1.35 16 13 C -0.03 -0.63 4.37 -104.65 -0.46 -1.09 16 14 C -0.20 -3.53 9.70 -39.53 -0.38 -3.92 16 15 C -0.08 -1.45 10.04 -39.61 -0.40 -1.84 16 16 C -0.23 -5.22 9.17 -39.40 -0.36 -5.58 16 17 C 0.15 3.87 6.65 -39.11 -0.26 3.61 16 18 O -0.18 -5.28 9.76 0.05 0.00 -5.28 16 19 C -0.39 -11.17 9.49 30.89 0.29 -10.88 16 20 H 0.09 2.40 5.21 -52.49 -0.27 2.13 16 21 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 22 N -0.86 -25.73 13.67 55.48 0.76 -24.98 16 23 Si 0.94 20.86 29.55 -169.99 -5.02 15.83 16 24 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 25 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 26 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 27 C -0.17 -3.81 9.65 -39.39 -0.38 -4.19 16 28 H 0.06 0.45 8.10 -51.93 -0.42 0.03 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.43 8.10 -51.93 -0.42 0.01 16 31 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.21 7.56 -51.93 -0.39 -0.18 16 34 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.40 1.72 7.89 -40.82 -0.32 1.40 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.40 2.47 8.47 -40.82 -0.35 2.13 16 41 H 0.10 0.96 8.09 -51.93 -0.42 0.54 16 42 H 0.10 1.09 8.08 -51.93 -0.42 0.67 16 43 H 0.10 1.55 8.06 -52.49 -0.42 1.13 16 44 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 45 H 0.13 2.83 5.64 -52.49 -0.30 2.53 16 46 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 47 H 0.11 2.41 8.06 -52.49 -0.42 1.99 16 LS Contribution 399.84 15.07 6.03 6.03 Total: -1.00 -37.50 399.84 -7.89 -45.39 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -7.10 Total: 4.44 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: -2.07 Total: -13.10 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: 0.10 Total: -37.17 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: 0.18 Total: -21.42 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -37.50 -7.89 -45.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089658241.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.563 kcal (2) G-P(sol) polarization free energy of solvation -37.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds