Wall clock time and date at job start Tue Mar 31 2020 17:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46995 * 2 1 4 4 C 1.50700 * 109.46849 * 119.99736 * 2 1 3 5 5 O 1.21277 * 120.00195 * 0.02562 * 4 2 1 6 6 N 1.34783 * 119.99813 * 180.02562 * 4 2 1 7 7 C 1.46500 * 120.00093 * 180.02562 * 6 4 2 8 8 C 1.52996 * 109.47128 * 179.97438 * 7 6 4 9 9 N 1.46500 * 109.47128 * 179.97438 * 8 7 6 10 10 C 1.34774 * 120.00119 * 180.02562 * 9 8 7 11 11 O 1.21282 * 120.00304 * 0.02562 * 10 9 8 12 12 C 1.50704 * 120.00135 * 180.02562 * 10 9 8 13 13 C 1.50699 * 109.47208 * 180.02562 * 12 10 9 14 14 C 1.38328 * 119.96230 * 269.97915 * 13 12 10 15 15 C 1.38281 * 120.13505 * 180.02562 * 14 13 12 16 16 C 1.38120 * 120.06679 * 359.68445 * 15 14 13 17 17 C 1.38852 * 119.93490 * 0.58817 * 16 15 14 18 18 O 1.35752 * 120.07221 * 179.70368 * 17 16 15 19 19 C 1.34829 * 116.99954 * 354.17311 * 18 17 16 20 20 H 1.07998 * 119.99999 * 5.03596 * 19 18 17 21 21 C 1.38656 * 119.99670 * 185.03445 * 19 18 17 22 22 N 1.31550 * 120.00275 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99668 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46814 * 90.00164 * 23 21 19 25 25 H 1.48501 * 109.47378 * 210.00272 * 23 21 19 26 26 H 1.48503 * 109.47143 * 330.00397 * 23 21 19 27 27 C 1.38073 * 119.96534 * 89.99715 * 13 12 10 28 28 H 1.08998 * 109.47635 * 299.99651 * 1 2 3 29 29 H 1.09007 * 109.46996 * 60.00441 * 1 2 3 30 30 H 1.09002 * 109.47193 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47635 * 240.00349 * 2 1 3 32 32 H 1.09003 * 109.47032 * 59.99971 * 3 2 1 33 33 H 1.09001 * 109.47118 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47346 * 300.00363 * 3 2 1 35 35 H 0.97004 * 119.99718 * 0.02562 * 6 4 2 36 36 H 1.09002 * 109.46490 * 60.00223 * 7 6 4 37 37 H 1.08998 * 109.47288 * 300.00660 * 7 6 4 38 38 H 1.09008 * 109.46644 * 60.00325 * 8 7 6 39 39 H 1.08998 * 109.47635 * 300.00520 * 8 7 6 40 40 H 0.97001 * 119.99420 * 0.02562 * 9 8 7 41 41 H 1.09002 * 109.46571 * 59.99894 * 12 10 9 42 42 H 1.08992 * 109.46782 * 300.00158 * 12 10 9 43 43 H 1.08001 * 119.93314 * 0.02562 * 14 13 12 44 44 H 1.07993 * 119.96315 * 179.97438 * 15 14 13 45 45 H 1.08001 * 120.03256 * 180.31909 * 16 15 14 46 46 H 0.96999 * 119.99936 * 179.97438 * 22 21 19 47 47 H 1.07996 * 120.03547 * 0.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0322 -0.7104 1.2305 5 8 1.2441 -1.1716 2.0286 6 7 3.3574 -0.8331 1.4441 7 6 3.8457 -1.5241 2.6400 8 6 5.3757 -1.5240 2.6401 9 7 5.8640 -2.2145 3.8363 10 6 7.1890 -2.3371 4.0499 11 8 7.9772 -1.8754 3.2521 12 6 7.6914 -3.0479 5.2802 13 6 9.1984 -3.0466 5.2810 14 6 9.8904 -4.0837 4.6818 15 6 11.2732 -4.0864 4.6809 16 6 11.9676 -3.0495 5.2729 17 6 11.2759 -2.0100 5.8802 18 8 11.9556 -0.9926 6.4682 19 6 13.2971 -1.1104 6.5346 20 1 13.7900 -1.9454 6.0588 21 6 14.0437 -0.1597 7.2136 22 7 13.4433 0.8571 7.7934 23 14 15.9023 -0.3233 7.3061 24 1 16.5190 0.3779 6.1515 25 1 16.3902 0.2823 8.5712 26 1 16.2751 -1.7603 7.2692 27 6 9.8868 -2.0105 5.8800 28 1 -0.3634 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8934 -0.5137 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 3.1299 1.4425 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 3.9877 -0.4638 0.8059 36 1 3.4828 -2.5519 2.6392 37 1 3.4818 -1.0110 3.5302 38 1 5.7389 -0.4962 2.6405 39 1 5.7391 -2.0373 1.7499 40 1 5.2336 -2.5834 4.4746 41 1 7.3285 -4.0758 5.2794 42 1 7.3275 -2.5348 6.1702 43 1 9.3497 -4.8929 4.2137 44 1 11.8107 -4.8976 4.2126 45 1 13.0476 -3.0496 5.2674 46 1 13.9657 1.5220 8.2687 47 1 9.3459 -1.2015 6.3483 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089658241.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:26 Heat of formation + Delta-G solvation = -119.077889 kcal Electronic energy + Delta-G solvation = -26924.914566 eV Core-core repulsion = 22878.723138 eV Total energy + Delta-G solvation = -4046.191428 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.20194 -40.92214 -40.35010 -38.24531 -36.99201 -35.48591 -34.92333 -34.33566 -33.46230 -30.98007 -30.34122 -28.29580 -27.87504 -27.20984 -24.94564 -23.36545 -23.20693 -22.72821 -21.48971 -20.88937 -19.50764 -18.82138 -18.31558 -18.00945 -17.12620 -17.00575 -16.73673 -16.58394 -16.47808 -16.09648 -16.06044 -15.50945 -15.44325 -15.04242 -14.81682 -14.66477 -14.51244 -14.28862 -13.97786 -13.71246 -13.58974 -13.18531 -13.02839 -12.97121 -12.95047 -12.80052 -12.67623 -12.46056 -12.37727 -12.20907 -12.09782 -12.05927 -11.98675 -11.19778 -11.07479 -10.82392 -10.77783 -10.23796 -10.11603 -9.62771 -8.96775 -8.46492 -6.15056 0.52781 0.77016 1.34351 1.44032 1.52321 1.59299 1.66365 1.80726 2.18149 2.55240 2.87476 3.19589 3.45598 3.58373 3.73757 3.82141 3.97985 4.00897 4.06811 4.11792 4.16222 4.33447 4.37027 4.45965 4.49278 4.59749 4.67446 4.75319 4.75970 4.80619 4.85615 4.89196 4.93888 5.08151 5.08877 5.13774 5.24838 5.31830 5.32074 5.35237 5.43106 5.66343 5.74060 5.76635 6.03483 6.24740 6.44847 6.54338 6.98092 7.18312 7.27582 7.79850 8.77029 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020263 B = 0.001675 C = 0.001596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.467967 B =16709.604840 C =17535.394219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.110 4.110 3 C -0.144 4.144 4 C 0.513 3.487 5 O -0.584 6.584 6 N -0.719 5.719 7 C 0.118 3.882 8 C 0.115 3.885 9 N -0.717 5.717 10 C 0.517 3.483 11 O -0.576 6.576 12 C -0.091 4.091 13 C -0.027 4.027 14 C -0.180 4.180 15 C -0.075 4.075 16 C -0.247 4.247 17 C 0.110 3.890 18 O -0.235 6.235 19 C -0.414 4.414 20 H 0.100 0.900 21 C -0.024 4.024 22 N -0.922 5.922 23 Si 1.020 2.980 24 H -0.264 1.264 25 H -0.269 1.269 26 H -0.252 1.252 27 C -0.192 4.192 28 H 0.045 0.955 29 H 0.083 0.917 30 H 0.049 0.951 31 H 0.122 0.878 32 H 0.048 0.952 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.416 0.584 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.420 0.580 41 H 0.146 0.854 42 H 0.122 0.878 43 H 0.148 0.852 44 H 0.145 0.855 45 H 0.117 0.883 46 H 0.272 0.728 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.017 -6.778 -15.061 28.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.131 4.131 3 C -0.201 4.201 4 C 0.301 3.699 5 O -0.463 6.463 6 N -0.373 5.373 7 C -0.007 4.007 8 C -0.010 4.010 9 N -0.372 5.372 10 C 0.305 3.695 11 O -0.454 6.454 12 C -0.130 4.130 13 C -0.028 4.028 14 C -0.198 4.198 15 C -0.092 4.092 16 C -0.266 4.266 17 C 0.060 3.940 18 O -0.142 6.142 19 C -0.491 4.491 20 H 0.117 0.883 21 C -0.221 4.221 22 N -0.560 5.560 23 Si 0.839 3.161 24 H -0.189 1.189 25 H -0.194 1.194 26 H -0.176 1.176 27 C -0.211 4.211 28 H 0.064 0.936 29 H 0.102 0.898 30 H 0.068 0.932 31 H 0.140 0.860 32 H 0.068 0.932 33 H 0.090 0.910 34 H 0.104 0.896 35 H 0.253 0.747 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.258 0.742 41 H 0.164 0.836 42 H 0.140 0.860 43 H 0.166 0.834 44 H 0.163 0.837 45 H 0.135 0.865 46 H 0.081 0.919 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -23.052 -6.392 -14.841 28.151 hybrid contribution 1.064 0.444 0.390 1.217 sum -21.988 -5.948 -14.450 26.975 Atomic orbital electron populations 1.21628 0.92901 1.02142 1.02459 1.21369 0.98040 0.98015 0.95692 1.21821 1.01951 0.93041 1.03335 1.21324 0.81731 0.78731 0.88110 1.90693 1.56388 1.50457 1.48806 1.45800 1.07392 1.58587 1.25473 1.21301 0.91954 0.98545 0.88893 1.21319 0.92689 0.98056 0.88904 1.45617 1.06612 1.59152 1.25769 1.20886 0.82074 0.79107 0.87462 1.90765 1.56593 1.49513 1.48530 1.20704 0.90701 1.04827 0.96806 1.19216 0.95068 0.93037 0.95482 1.20987 0.93830 1.00493 1.04481 1.21137 0.94876 0.96756 0.96479 1.21295 1.00452 0.97752 1.07119 1.19897 0.92907 0.88386 0.92780 1.83933 1.21378 1.38775 1.70137 1.21823 0.79129 1.12172 1.35935 0.88262 1.26605 1.06165 0.94379 0.94962 1.70188 1.38555 1.12849 1.34429 0.84575 0.73374 0.79635 0.78518 1.18926 1.19412 1.17604 1.20228 0.90672 1.01588 1.08646 0.93563 0.89776 0.93179 0.86015 0.93243 0.91000 0.89609 0.74677 0.90414 0.91073 0.91754 0.90814 0.74246 0.83640 0.85963 0.83393 0.83728 0.86533 0.91878 0.87553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.47 8.48 71.98 0.61 -0.85 16 2 C -0.11 -1.00 3.26 -11.54 -0.04 -1.04 16 3 C -0.14 -0.93 9.09 71.98 0.65 -0.28 16 4 C 0.51 7.96 7.15 87.66 0.63 8.59 16 5 O -0.58 -14.25 15.98 -3.02 -0.05 -14.30 16 6 N -0.72 -8.12 5.45 -463.06 -2.52 -10.65 16 7 C 0.12 1.43 5.79 86.38 0.50 1.93 16 8 C 0.11 1.67 5.79 86.38 0.50 2.17 16 9 N -0.72 -11.17 5.56 -463.06 -2.57 -13.74 16 10 C 0.52 12.82 7.82 87.66 0.69 13.51 16 11 O -0.58 -20.92 16.03 -3.04 -0.05 -20.97 16 12 C -0.09 -1.99 5.83 29.10 0.17 -1.82 16 13 C -0.03 -0.94 4.37 -19.88 -0.09 -1.02 16 14 C -0.18 -5.78 9.70 22.30 0.22 -5.56 16 15 C -0.07 -2.70 10.04 22.25 0.22 -2.47 16 16 C -0.25 -11.38 9.17 22.39 0.21 -11.18 16 17 C 0.11 5.80 6.65 22.58 0.15 5.95 16 18 O -0.24 -14.80 9.76 -22.74 -0.22 -15.03 16 19 C -0.41 -25.05 9.49 67.92 0.64 -24.40 16 20 H 0.10 5.53 5.21 -2.91 -0.02 5.51 16 21 C -0.02 -1.40 5.49 84.83 0.47 -0.94 16 22 N -0.92 -57.93 13.67 21.61 0.30 -57.64 16 23 Si 1.02 43.96 29.55 68.60 2.03 45.99 16 24 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 25 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 26 H -0.25 -10.09 7.11 99.48 0.71 -9.38 16 27 C -0.19 -8.60 9.65 22.39 0.22 -8.39 16 28 H 0.05 0.66 8.10 -2.39 -0.02 0.64 16 29 H 0.08 0.54 8.14 -2.38 -0.02 0.52 16 30 H 0.05 0.67 8.10 -2.39 -0.02 0.65 16 31 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.07 0.33 7.56 -2.39 -0.02 0.31 16 34 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 35 H 0.42 2.69 7.89 -92.71 -0.73 1.96 16 36 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 39 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.42 3.62 8.47 -92.71 -0.79 2.83 16 41 H 0.15 1.89 8.09 -2.39 -0.02 1.88 16 42 H 0.12 2.21 8.08 -2.39 -0.02 2.20 16 43 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 44 H 0.14 4.10 8.06 -2.91 -0.02 4.07 16 45 H 0.12 5.44 5.64 -2.91 -0.02 5.43 16 46 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 47 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 Total: -1.00 -89.77 399.84 2.13 -87.64 By element: Atomic # 1 Polarization: 25.01 SS G_CDS: -0.52 Total: 24.49 kcal Atomic # 6 Polarization: -31.55 SS G_CDS: 5.74 Total: -25.80 kcal Atomic # 7 Polarization: -77.23 SS G_CDS: -4.80 Total: -82.03 kcal Atomic # 8 Polarization: -49.98 SS G_CDS: -0.32 Total: -50.29 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -89.77 2.13 -87.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089658241.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.437 kcal (2) G-P(sol) polarization free energy of solvation -89.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds