Wall clock time and date at job start Tue Mar 31 2020 17:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47283 * 2 1 4 4 H 1.08998 * 109.46745 * 54.12195 * 3 2 1 5 5 C 1.53004 * 109.47112 * 294.12744 * 3 2 1 6 6 C 1.52999 * 109.47226 * 174.12476 * 3 2 1 7 7 H 1.08999 * 109.47018 * 303.14406 * 6 3 2 8 8 N 1.46505 * 109.46972 * 183.14784 * 6 3 2 9 9 C 1.34775 * 120.00004 * 155.00138 * 8 6 3 10 10 O 1.21282 * 120.00096 * 359.97438 * 9 8 6 11 11 C 1.50700 * 119.99635 * 179.97438 * 9 8 6 12 12 C 1.50701 * 109.46945 * 179.97438 * 11 9 8 13 13 C 1.38327 * 119.96487 * 269.72687 * 12 11 9 14 14 C 1.38277 * 120.13670 * 179.76465 * 13 12 11 15 15 C 1.38128 * 120.07012 * 0.51133 * 14 13 12 16 16 C 1.38857 * 119.92700 * 359.74052 * 15 14 13 17 17 O 1.35756 * 120.06459 * 179.97438 * 16 15 14 18 18 C 1.34829 * 117.00282 * 5.88841 * 17 16 15 19 19 H 1.07997 * 119.99666 * 5.42676 * 18 17 16 20 20 C 1.38653 * 120.00167 * 185.42915 * 18 17 16 21 21 N 1.31551 * 119.99999 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 119.99796 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.47222 * 90.00285 * 22 20 18 24 24 H 1.48504 * 109.47061 * 210.00234 * 22 20 18 25 25 H 1.48501 * 109.47561 * 330.00381 * 22 20 18 26 26 C 1.38083 * 119.96786 * 89.99819 * 12 11 9 27 27 C 1.50697 * 109.47319 * 63.14683 * 6 3 2 28 28 N 1.34773 * 119.99556 * 274.67538 * 27 6 3 29 29 O 1.21277 * 120.00375 * 94.67271 * 27 6 3 30 30 H 1.08997 * 109.46811 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47065 * 299.99805 * 1 2 3 32 32 H 1.09011 * 109.46889 * 60.00021 * 1 2 3 33 33 H 1.09003 * 109.47153 * 240.00347 * 2 1 3 34 34 H 1.08994 * 109.47089 * 119.99951 * 2 1 3 35 35 H 1.08998 * 109.46867 * 299.99376 * 5 3 2 36 36 H 1.09000 * 109.47390 * 59.99793 * 5 3 2 37 37 H 1.08999 * 109.46658 * 179.97438 * 5 3 2 38 38 H 0.97004 * 119.99721 * 334.99121 * 8 6 3 39 39 H 1.08997 * 109.47232 * 60.00395 * 11 9 8 40 40 H 1.08996 * 109.47318 * 299.99952 * 11 9 8 41 41 H 1.07993 * 119.92950 * 359.97438 * 13 12 11 42 42 H 1.07998 * 119.96880 * 180.24952 * 14 13 12 43 43 H 1.08001 * 120.03313 * 179.72566 * 15 14 13 44 44 H 0.96996 * 119.99947 * 179.97438 * 21 20 18 45 45 H 1.07997 * 120.02920 * 359.95653 * 26 12 11 46 46 H 0.97003 * 120.00835 * 4.97103 * 28 27 6 47 47 H 0.97004 * 120.00050 * 184.97325 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5933 1.9858 0.8327 5 6 1.6541 2.1199 -1.3165 6 6 3.5629 1.4450 0.1477 7 1 3.8405 0.9134 1.0578 8 7 4.0439 2.8268 0.2232 9 6 5.2115 3.1012 0.8378 10 8 5.8639 2.2044 1.3287 11 6 5.7065 4.5225 0.9149 12 6 7.0231 4.5568 1.6473 13 6 7.0459 4.7243 3.0202 14 6 8.2517 4.7514 3.6964 15 6 9.4382 4.6219 3.0011 16 6 9.4189 4.4589 1.6222 17 8 10.5833 4.3318 0.9360 18 6 11.7162 4.2496 1.6625 19 1 11.6640 4.1975 2.7400 20 6 12.9480 4.2319 1.0264 21 7 14.0533 4.1512 1.7352 22 14 13.0380 4.3214 -0.8373 23 1 13.1180 5.7423 -1.2614 24 1 14.2440 3.5951 -1.3101 25 1 11.8237 3.6979 -1.4222 26 6 8.2058 4.4267 0.9465 27 6 4.1842 0.7612 -1.0429 28 7 4.3229 -0.5793 -1.0533 29 8 4.5592 1.4171 -1.9915 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 2.1009 1.5767 -2.1492 36 1 0.5692 2.1181 -1.4217 37 1 2.0171 3.1477 -1.3162 38 1 3.5220 3.5441 -0.1693 39 1 4.9781 5.1325 1.4491 40 1 5.8405 4.9158 -0.0928 41 1 6.1198 4.8307 3.5654 42 1 8.2661 4.8783 4.7688 43 1 10.3799 4.6476 3.5293 44 1 14.9150 4.1385 1.2901 45 1 8.1875 4.2997 -0.1258 46 1 3.9585 -1.1105 -0.3280 47 1 4.7873 -1.0132 -1.7862 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089735933.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:52 Heat of formation + Delta-G solvation = -90.682757 kcal Electronic energy + Delta-G solvation = -28603.255505 eV Core-core repulsion = 24558.295382 eV Total energy + Delta-G solvation = -4044.960123 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.81970 -39.40678 -38.65872 -37.01090 -36.51314 -34.22082 -33.68777 -32.39164 -32.10473 -30.30044 -29.37257 -28.06961 -26.63515 -25.09943 -24.28745 -22.19457 -21.66540 -20.99428 -20.13771 -20.01757 -17.95617 -17.60623 -17.30685 -17.00715 -16.82606 -15.94742 -15.56429 -15.34001 -15.08381 -15.07538 -14.52572 -14.22585 -14.06674 -13.87071 -13.64906 -13.53867 -13.39344 -13.38375 -12.61355 -12.54411 -12.42246 -12.36648 -12.12125 -12.06166 -11.64691 -11.46508 -11.28123 -11.23950 -11.09821 -10.78229 -10.71312 -10.68464 -10.39118 -10.08899 -9.85054 -9.82629 -9.34621 -9.17095 -8.80601 -8.07784 -7.29021 -6.34831 -4.01006 2.05951 2.34414 2.39392 2.66971 2.99361 3.27542 3.30653 3.44218 3.47574 4.17925 4.30558 4.32238 4.35556 4.52400 4.67055 4.76420 4.80518 4.91201 5.03131 5.06510 5.11250 5.14189 5.20865 5.29121 5.41751 5.44872 5.50238 5.54951 5.57147 5.61817 5.76105 5.81190 5.89375 5.90435 6.16766 6.19538 6.33128 6.56409 6.59715 6.86026 7.08301 7.17482 7.28446 7.35348 7.39223 7.67660 7.87466 8.05349 8.11246 8.23523 9.01026 9.64841 10.73093 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016944 B = 0.002563 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.090337 B =10920.881602 C =11845.731342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.128 4.128 3 C -0.093 4.093 4 H 0.092 0.908 5 C -0.155 4.155 6 C 0.132 3.868 7 H 0.109 0.891 8 N -0.717 5.717 9 C 0.518 3.482 10 O -0.518 6.518 11 C -0.092 4.092 12 C -0.035 4.035 13 C -0.188 4.188 14 C -0.077 4.077 15 C -0.217 4.217 16 C 0.160 3.840 17 O -0.219 6.219 18 C -0.387 4.387 19 H 0.106 0.894 20 C 0.062 3.938 21 N -0.882 5.882 22 Si 0.904 3.096 23 H -0.274 1.274 24 H -0.282 1.282 25 H -0.259 1.259 26 C -0.173 4.173 27 C 0.513 3.487 28 N -0.854 5.854 29 O -0.532 6.532 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.404 0.596 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.105 0.895 42 H 0.110 0.890 43 H 0.132 0.868 44 H 0.278 0.722 45 H 0.114 0.886 46 H 0.400 0.600 47 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.513 -6.184 -2.937 30.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.166 4.166 3 C -0.112 4.112 4 H 0.110 0.890 5 C -0.212 4.212 6 C 0.022 3.978 7 H 0.127 0.873 8 N -0.371 5.371 9 C 0.305 3.695 10 O -0.392 6.392 11 C -0.132 4.132 12 C -0.036 4.036 13 C -0.207 4.207 14 C -0.095 4.095 15 C -0.237 4.237 16 C 0.108 3.892 17 O -0.125 6.125 18 C -0.462 4.462 19 H 0.123 0.877 20 C -0.140 4.140 21 N -0.520 5.520 22 Si 0.730 3.270 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.183 1.183 26 C -0.192 4.192 27 C 0.296 3.704 28 N -0.419 5.419 29 O -0.407 6.407 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.240 0.760 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.123 0.877 42 H 0.128 0.872 43 H 0.150 0.850 44 H 0.088 0.912 45 H 0.132 0.868 46 H 0.229 0.771 47 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -28.517 -6.254 -3.336 29.385 hybrid contribution 0.150 -0.191 -0.744 0.783 sum -28.367 -6.446 -4.080 29.375 Atomic orbital electron populations 1.21779 0.94933 1.01960 1.02185 1.21703 0.96966 0.95242 1.02708 1.21395 0.91472 0.98084 1.00253 0.88990 1.21963 1.01786 1.00899 0.96541 1.20886 0.94239 0.85054 0.97600 0.87313 1.45755 1.24022 1.07510 1.59821 1.20845 0.79807 0.91913 0.76968 1.90757 1.55001 1.47925 1.45473 1.20572 0.96516 0.93277 1.02854 1.18647 0.91757 0.99783 0.93371 1.20407 0.97127 1.09940 0.93221 1.20729 0.92154 0.98018 0.98592 1.21298 0.99048 1.09059 0.94255 1.19024 0.86469 0.93058 0.90642 1.83587 1.12595 1.80543 1.35757 1.20754 0.81060 1.51497 0.92921 0.87710 1.24451 0.93572 0.95834 1.00190 1.69647 0.97598 1.48390 1.36380 0.86197 0.78221 0.78801 0.83805 1.19924 1.20815 1.18330 1.19964 0.89766 1.10161 0.99356 1.21059 0.78028 0.82611 0.88748 1.43952 1.61366 1.07787 1.28796 1.90744 1.49113 1.64623 1.36244 0.92470 0.92468 0.92311 0.91202 0.91240 0.91895 0.91702 0.92236 0.76024 0.88140 0.88030 0.87717 0.87193 0.85004 0.91154 0.86824 0.77132 0.76799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.60 9.68 37.16 0.36 -0.24 16 2 C -0.13 -0.59 4.42 -26.73 -0.12 -0.71 16 3 C -0.09 -0.55 2.33 -90.62 -0.21 -0.76 16 4 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 5 C -0.15 -0.99 8.44 37.16 0.31 -0.67 16 6 C 0.13 1.23 2.17 -69.08 -0.15 1.08 16 7 H 0.11 1.06 7.58 -51.93 -0.39 0.66 16 8 N -0.72 -7.51 4.63 -54.93 -0.25 -7.77 16 9 C 0.52 7.46 7.78 -10.99 -0.09 7.38 16 10 O -0.52 -9.82 15.70 5.56 0.09 -9.74 16 11 C -0.09 -1.22 5.83 -29.03 -0.17 -1.39 16 12 C -0.03 -0.63 4.37 -104.65 -0.46 -1.09 16 13 C -0.19 -3.33 9.70 -39.53 -0.38 -3.71 16 14 C -0.08 -1.47 10.04 -39.61 -0.40 -1.87 16 15 C -0.22 -4.98 9.13 -39.39 -0.36 -5.34 16 16 C 0.16 3.95 6.65 -39.11 -0.26 3.69 16 17 O -0.22 -6.12 8.59 0.03 0.00 -6.12 16 18 C -0.39 -11.37 9.90 30.89 0.31 -11.06 16 19 H 0.11 3.14 5.53 -52.49 -0.29 2.85 16 20 C 0.06 1.81 5.49 -17.52 -0.10 1.72 16 21 N -0.88 -26.23 13.96 55.48 0.77 -25.46 16 22 Si 0.90 22.62 28.62 -169.99 -4.86 17.75 16 23 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.26 -6.59 7.11 56.52 0.40 -6.19 16 26 C -0.17 -3.74 9.65 -39.40 -0.38 -4.12 16 27 C 0.51 5.88 5.56 -10.99 -0.06 5.82 16 28 N -0.85 -6.82 7.94 31.22 0.25 -6.57 16 29 O -0.53 -8.30 16.80 5.56 0.09 -8.21 16 30 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.06 0.24 6.59 -51.92 -0.34 -0.11 16 33 H 0.07 0.34 6.68 -51.93 -0.35 -0.01 16 34 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.06 0.53 6.75 -51.93 -0.35 0.18 16 36 H 0.06 0.32 6.59 -51.93 -0.34 -0.02 16 37 H 0.06 0.37 6.67 -51.93 -0.35 0.03 16 38 H 0.40 3.16 7.06 -40.82 -0.29 2.87 16 39 H 0.10 0.97 8.08 -51.93 -0.42 0.55 16 40 H 0.10 1.20 8.08 -51.93 -0.42 0.78 16 41 H 0.10 1.53 8.06 -52.49 -0.42 1.11 16 42 H 0.11 1.79 8.06 -52.49 -0.42 1.36 16 43 H 0.13 3.14 5.72 -52.49 -0.30 2.84 16 44 H 0.28 7.65 8.31 -40.82 -0.34 7.31 16 45 H 0.11 2.38 8.06 -52.49 -0.42 1.96 16 46 H 0.40 2.01 8.00 -40.82 -0.33 1.69 16 47 H 0.40 2.98 8.93 -40.82 -0.36 2.62 16 LS Contribution 386.01 15.07 5.82 5.82 Total: -1.00 -37.44 386.01 -6.87 -44.32 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -6.63 Total: 7.26 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: -2.15 Total: -11.28 kcal Atomic # 7 Polarization: -40.56 SS G_CDS: 0.77 Total: -39.79 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: 0.18 Total: -24.07 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -4.86 Total: 17.75 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -37.44 -6.87 -44.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089735933.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.365 kcal (2) G-P(sol) polarization free energy of solvation -37.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds