Wall clock time and date at job start Tue Mar 31 2020 17:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47283 * 2 1 4 4 H 1.08998 * 109.46745 * 54.12195 * 3 2 1 5 5 C 1.53004 * 109.47112 * 294.12744 * 3 2 1 6 6 C 1.52999 * 109.47226 * 174.12476 * 3 2 1 7 7 H 1.08999 * 109.47018 * 303.14406 * 6 3 2 8 8 N 1.46505 * 109.46972 * 183.14784 * 6 3 2 9 9 C 1.34775 * 120.00004 * 155.00138 * 8 6 3 10 10 O 1.21282 * 120.00096 * 359.97438 * 9 8 6 11 11 C 1.50700 * 119.99635 * 179.97438 * 9 8 6 12 12 C 1.50701 * 109.46945 * 179.97438 * 11 9 8 13 13 C 1.38327 * 119.96487 * 269.72687 * 12 11 9 14 14 C 1.38277 * 120.13670 * 179.76465 * 13 12 11 15 15 C 1.38128 * 120.07012 * 0.51133 * 14 13 12 16 16 C 1.38857 * 119.92700 * 359.74052 * 15 14 13 17 17 O 1.35756 * 120.06459 * 179.97438 * 16 15 14 18 18 C 1.34829 * 117.00282 * 5.88841 * 17 16 15 19 19 H 1.07997 * 119.99666 * 5.42676 * 18 17 16 20 20 C 1.38653 * 120.00167 * 185.42915 * 18 17 16 21 21 N 1.31551 * 119.99999 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 119.99796 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.47222 * 90.00285 * 22 20 18 24 24 H 1.48504 * 109.47061 * 210.00234 * 22 20 18 25 25 H 1.48501 * 109.47561 * 330.00381 * 22 20 18 26 26 C 1.38083 * 119.96786 * 89.99819 * 12 11 9 27 27 C 1.50697 * 109.47319 * 63.14683 * 6 3 2 28 28 N 1.34773 * 119.99556 * 274.67538 * 27 6 3 29 29 O 1.21277 * 120.00375 * 94.67271 * 27 6 3 30 30 H 1.08997 * 109.46811 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47065 * 299.99805 * 1 2 3 32 32 H 1.09011 * 109.46889 * 60.00021 * 1 2 3 33 33 H 1.09003 * 109.47153 * 240.00347 * 2 1 3 34 34 H 1.08994 * 109.47089 * 119.99951 * 2 1 3 35 35 H 1.08998 * 109.46867 * 299.99376 * 5 3 2 36 36 H 1.09000 * 109.47390 * 59.99793 * 5 3 2 37 37 H 1.08999 * 109.46658 * 179.97438 * 5 3 2 38 38 H 0.97004 * 119.99721 * 334.99121 * 8 6 3 39 39 H 1.08997 * 109.47232 * 60.00395 * 11 9 8 40 40 H 1.08996 * 109.47318 * 299.99952 * 11 9 8 41 41 H 1.07993 * 119.92950 * 359.97438 * 13 12 11 42 42 H 1.07998 * 119.96880 * 180.24952 * 14 13 12 43 43 H 1.08001 * 120.03313 * 179.72566 * 15 14 13 44 44 H 0.96996 * 119.99947 * 179.97438 * 21 20 18 45 45 H 1.07997 * 120.02920 * 359.95653 * 26 12 11 46 46 H 0.97003 * 120.00835 * 4.97103 * 28 27 6 47 47 H 0.97004 * 120.00050 * 184.97325 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5933 1.9858 0.8327 5 6 1.6541 2.1199 -1.3165 6 6 3.5629 1.4450 0.1477 7 1 3.8405 0.9134 1.0578 8 7 4.0439 2.8268 0.2232 9 6 5.2115 3.1012 0.8378 10 8 5.8639 2.2044 1.3287 11 6 5.7065 4.5225 0.9149 12 6 7.0231 4.5568 1.6473 13 6 7.0459 4.7243 3.0202 14 6 8.2517 4.7514 3.6964 15 6 9.4382 4.6219 3.0011 16 6 9.4189 4.4589 1.6222 17 8 10.5833 4.3318 0.9360 18 6 11.7162 4.2496 1.6625 19 1 11.6640 4.1975 2.7400 20 6 12.9480 4.2319 1.0264 21 7 14.0533 4.1512 1.7352 22 14 13.0380 4.3214 -0.8373 23 1 13.1180 5.7423 -1.2614 24 1 14.2440 3.5951 -1.3101 25 1 11.8237 3.6979 -1.4222 26 6 8.2058 4.4267 0.9465 27 6 4.1842 0.7612 -1.0429 28 7 4.3229 -0.5793 -1.0533 29 8 4.5592 1.4171 -1.9915 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 2.1009 1.5767 -2.1492 36 1 0.5692 2.1181 -1.4217 37 1 2.0171 3.1477 -1.3162 38 1 3.5220 3.5441 -0.1693 39 1 4.9781 5.1325 1.4491 40 1 5.8405 4.9158 -0.0928 41 1 6.1198 4.8307 3.5654 42 1 8.2661 4.8783 4.7688 43 1 10.3799 4.6476 3.5293 44 1 14.9150 4.1385 1.2901 45 1 8.1875 4.2997 -0.1258 46 1 3.9585 -1.1105 -0.3280 47 1 4.7873 -1.0132 -1.7862 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089735933.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:51 Heat of formation + Delta-G solvation = -119.326931 kcal Electronic energy + Delta-G solvation = -28604.497609 eV Core-core repulsion = 24558.295382 eV Total energy + Delta-G solvation = -4046.202227 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.72982 -40.93780 -39.99555 -38.32324 -37.59163 -35.09450 -34.50088 -34.48787 -33.52676 -31.18706 -30.79795 -29.01244 -27.73941 -27.12390 -24.83349 -23.47441 -23.00435 -22.21702 -21.27583 -20.75336 -19.69430 -19.04415 -18.48467 -18.21736 -17.70138 -16.89268 -16.83775 -16.64223 -16.30189 -16.03894 -15.81082 -15.62457 -15.53061 -15.09188 -14.82023 -14.71152 -14.58443 -14.34488 -14.14845 -14.00102 -13.91941 -13.06600 -13.02089 -12.87869 -12.81626 -12.55651 -12.52062 -12.48297 -12.35691 -11.97057 -11.94317 -11.75181 -11.50545 -11.34944 -11.29256 -11.01958 -10.90697 -10.64919 -10.10367 -9.68130 -9.07445 -8.52379 -6.24519 0.47140 0.69339 1.26819 1.31303 1.47117 1.48434 1.65216 2.09603 2.25649 2.65973 2.77384 3.06397 3.11470 3.61404 3.73432 3.80679 3.88810 4.03529 4.07147 4.10450 4.29305 4.34343 4.43008 4.54148 4.57379 4.61774 4.63886 4.69401 4.69736 4.77401 4.96798 5.03374 5.10995 5.17147 5.22644 5.23193 5.29843 5.38705 5.44334 5.52297 5.64586 5.71722 5.75216 5.83512 5.90485 6.24021 6.37588 6.49729 6.82153 7.22214 7.28110 7.58032 8.59559 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016944 B = 0.002563 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.090337 B =10920.881602 C =11845.731342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.128 4.128 3 C -0.082 4.082 4 H 0.112 0.888 5 C -0.154 4.154 6 C 0.130 3.870 7 H 0.109 0.891 8 N -0.700 5.700 9 C 0.517 3.483 10 O -0.573 6.573 11 C -0.091 4.091 12 C -0.027 4.027 13 C -0.167 4.167 14 C -0.076 4.076 15 C -0.239 4.239 16 C 0.117 3.883 17 O -0.250 6.250 18 C -0.398 4.398 19 H 0.080 0.920 20 C 0.010 3.990 21 N -0.922 5.922 22 Si 0.969 3.031 23 H -0.262 1.262 24 H -0.264 1.264 25 H -0.271 1.271 26 C -0.185 4.185 27 C 0.504 3.496 28 N -0.840 5.840 29 O -0.582 6.582 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.038 0.962 36 H 0.081 0.919 37 H 0.060 0.940 38 H 0.419 0.581 39 H 0.151 0.849 40 H 0.118 0.882 41 H 0.154 0.846 42 H 0.144 0.856 43 H 0.108 0.892 44 H 0.285 0.715 45 H 0.112 0.888 46 H 0.415 0.585 47 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.814 -5.801 -2.829 34.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C -0.101 4.101 4 H 0.130 0.870 5 C -0.211 4.211 6 C 0.021 3.979 7 H 0.126 0.874 8 N -0.353 5.353 9 C 0.304 3.696 10 O -0.451 6.451 11 C -0.130 4.130 12 C -0.028 4.028 13 C -0.185 4.185 14 C -0.094 4.094 15 C -0.258 4.258 16 C 0.069 3.931 17 O -0.158 6.158 18 C -0.475 4.475 19 H 0.098 0.902 20 C -0.188 4.188 21 N -0.563 5.563 22 Si 0.791 3.209 23 H -0.187 1.187 24 H -0.188 1.188 25 H -0.195 1.195 26 C -0.204 4.204 27 C 0.288 3.712 28 N -0.405 5.405 29 O -0.461 6.461 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.057 0.943 36 H 0.100 0.900 37 H 0.079 0.921 38 H 0.257 0.743 39 H 0.169 0.831 40 H 0.136 0.864 41 H 0.172 0.828 42 H 0.162 0.838 43 H 0.126 0.874 44 H 0.095 0.905 45 H 0.130 0.870 46 H 0.247 0.753 47 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -32.905 -5.886 -3.212 33.581 hybrid contribution 1.133 -0.353 -0.651 1.353 sum -31.772 -6.238 -3.863 32.608 Atomic orbital electron populations 1.21767 0.94152 1.02350 1.02423 1.21722 0.97572 0.94353 1.03001 1.21406 0.88778 0.99272 1.00658 0.87038 1.21959 1.02726 1.00586 0.95831 1.21094 0.96289 0.84119 0.96440 0.87350 1.45610 1.22844 1.08668 1.58222 1.21006 0.80206 0.91746 0.76604 1.90750 1.56719 1.49374 1.48241 1.20703 0.94763 0.93573 1.03989 1.19197 0.92727 0.96830 0.94035 1.21029 0.98259 1.05971 0.93217 1.21145 0.91303 0.96618 1.00341 1.21331 0.99875 1.10683 0.93920 1.19595 0.86496 0.95197 0.91826 1.83522 1.12955 1.83234 1.36039 1.20702 0.82408 1.52139 0.92224 0.90226 1.25252 0.93076 0.95669 1.04809 1.69722 0.98190 1.50196 1.38174 0.85250 0.78115 0.79385 0.78127 1.18672 1.18830 1.19548 1.20251 0.90033 1.10474 0.99680 1.21514 0.77516 0.83375 0.88757 1.43875 1.60277 1.07115 1.29219 1.90720 1.51491 1.65789 1.38075 0.92098 0.91832 0.92436 0.91811 0.90136 0.94295 0.90001 0.92094 0.74260 0.83103 0.86374 0.82831 0.83840 0.87419 0.90538 0.86996 0.75337 0.76466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.68 71.98 0.70 -0.05 16 2 C -0.13 -0.83 4.42 30.59 0.14 -0.70 16 3 C -0.08 -0.73 2.33 -10.79 -0.03 -0.75 16 4 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 5 C -0.15 -1.59 8.44 71.98 0.61 -0.99 16 6 C 0.13 2.14 2.17 44.24 0.10 2.23 16 7 H 0.11 1.86 7.58 -2.39 -0.02 1.84 16 8 N -0.70 -12.60 4.63 -446.10 -2.06 -14.67 16 9 C 0.52 13.41 7.78 87.66 0.68 14.09 16 10 O -0.57 -20.83 15.70 -3.03 -0.05 -20.87 16 11 C -0.09 -2.02 5.83 29.10 0.17 -1.85 16 12 C -0.03 -0.91 4.37 -19.88 -0.09 -1.00 16 13 C -0.17 -5.24 9.70 22.30 0.22 -5.02 16 14 C -0.08 -2.79 10.04 22.25 0.22 -2.57 16 15 C -0.24 -11.33 9.13 22.39 0.20 -11.12 16 16 C 0.12 6.04 6.65 22.57 0.15 6.19 16 17 O -0.25 -14.72 8.59 -22.80 -0.20 -14.92 16 18 C -0.40 -24.94 9.90 67.92 0.67 -24.27 16 19 H 0.08 5.20 5.53 -2.91 -0.02 5.18 16 20 C 0.01 0.62 5.49 84.83 0.47 1.09 16 21 N -0.92 -57.16 13.96 21.61 0.30 -56.86 16 22 Si 0.97 48.23 28.62 68.60 1.96 50.19 16 23 H -0.26 -12.39 7.11 99.48 0.71 -11.68 16 24 H -0.26 -12.15 7.11 99.48 0.71 -11.44 16 25 H -0.27 -13.81 7.11 99.48 0.71 -13.11 16 26 C -0.19 -8.03 9.65 22.39 0.22 -7.81 16 27 C 0.50 11.09 5.56 87.66 0.49 11.58 16 28 N -0.84 -12.63 7.94 -173.54 -1.38 -14.01 16 29 O -0.58 -18.04 16.80 -3.02 -0.05 -18.09 16 30 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.06 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.06 0.31 6.59 -2.38 -0.02 0.29 16 33 H 0.06 0.50 6.68 -2.39 -0.02 0.48 16 34 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 35 H 0.04 0.61 6.75 -2.39 -0.02 0.59 16 36 H 0.08 0.57 6.59 -2.39 -0.02 0.55 16 37 H 0.06 0.60 6.67 -2.39 -0.02 0.58 16 38 H 0.42 5.02 7.06 -92.71 -0.65 4.36 16 39 H 0.15 1.87 8.08 -2.39 -0.02 1.85 16 40 H 0.12 2.32 8.08 -2.39 -0.02 2.30 16 41 H 0.15 3.44 8.06 -2.91 -0.02 3.42 16 42 H 0.14 4.24 8.06 -2.91 -0.02 4.21 16 43 H 0.11 5.54 5.72 -2.91 -0.02 5.53 16 44 H 0.28 16.15 8.31 -92.71 -0.77 15.38 16 45 H 0.11 4.77 8.06 -2.91 -0.02 4.74 16 46 H 0.42 3.55 8.00 -92.71 -0.74 2.81 16 47 H 0.40 5.80 8.93 -92.71 -0.83 4.97 16 Total: -1.00 -88.10 386.01 2.25 -85.85 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: -1.19 Total: 24.32 kcal Atomic # 6 Polarization: -25.86 SS G_CDS: 4.91 Total: -20.95 kcal Atomic # 7 Polarization: -82.39 SS G_CDS: -3.14 Total: -85.53 kcal Atomic # 8 Polarization: -53.59 SS G_CDS: -0.29 Total: -53.88 kcal Atomic # 14 Polarization: 48.23 SS G_CDS: 1.96 Total: 50.19 kcal Total: -88.10 2.25 -85.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089735933.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.480 kcal (2) G-P(sol) polarization free energy of solvation -88.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds