Wall clock time and date at job start Tue Mar 31 2020 18:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47283 * 2 1 4 4 N 1.46500 * 109.47128 * 179.97438 * 3 2 1 5 5 C 1.34774 * 120.00119 * 180.02562 * 4 3 2 6 6 O 1.21282 * 120.00304 * 0.02562 * 5 4 3 7 7 C 1.50704 * 120.00135 * 180.02562 * 5 4 3 8 8 C 1.52996 * 109.47144 * 179.97438 * 7 5 4 9 9 N 1.46500 * 109.47128 * 179.97438 * 8 7 5 10 10 C 1.34774 * 120.00119 * 180.02562 * 9 8 7 11 11 O 1.21282 * 120.00304 * 0.02562 * 10 9 8 12 12 C 1.50704 * 120.00135 * 180.02562 * 10 9 8 13 13 C 1.50699 * 109.47208 * 180.02562 * 12 10 9 14 14 C 1.38328 * 119.96230 * 269.97915 * 13 12 10 15 15 C 1.38281 * 120.13505 * 180.02562 * 14 13 12 16 16 C 1.38120 * 120.06679 * 359.68445 * 15 14 13 17 17 C 1.38852 * 119.93490 * 0.58817 * 16 15 14 18 18 O 1.35752 * 120.07221 * 179.70368 * 17 16 15 19 19 C 1.34829 * 116.99954 * 354.17311 * 18 17 16 20 20 H 1.07998 * 119.99999 * 5.03596 * 19 18 17 21 21 C 1.38656 * 119.99670 * 185.03445 * 19 18 17 22 22 N 1.31550 * 120.00275 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99668 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47010 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46908 * 119.99967 * 23 21 19 26 26 H 1.48504 * 109.47373 * 240.00300 * 23 21 19 27 27 C 1.38073 * 119.96534 * 89.99715 * 13 12 10 28 28 H 1.09001 * 109.47412 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47167 * 300.00021 * 1 2 3 30 30 H 1.09003 * 109.47125 * 59.99737 * 1 2 3 31 31 H 1.09002 * 109.46489 * 240.00201 * 2 1 3 32 32 H 1.08998 * 109.47133 * 120.00733 * 2 1 3 33 33 H 1.09007 * 109.47155 * 60.00137 * 3 2 1 34 34 H 1.08998 * 109.47635 * 300.00426 * 3 2 1 35 35 H 0.97009 * 119.99766 * 0.02562 * 4 3 2 36 36 H 1.09002 * 109.46571 * 59.99894 * 7 5 4 37 37 H 1.08998 * 109.47190 * 300.00341 * 7 5 4 38 38 H 1.09008 * 109.46644 * 60.00215 * 8 7 5 39 39 H 1.08998 * 109.47635 * 300.00411 * 8 7 5 40 40 H 0.97001 * 119.99420 * 0.02562 * 9 8 7 41 41 H 1.09002 * 109.46571 * 59.99894 * 12 10 9 42 42 H 1.08992 * 109.46782 * 300.00158 * 12 10 9 43 43 H 1.08001 * 119.93314 * 0.02562 * 14 13 12 44 44 H 1.07993 * 119.96315 * 179.97438 * 15 14 13 45 45 H 1.08006 * 120.03715 * 180.31908 * 16 15 14 46 46 H 0.96999 * 119.99936 * 179.97438 * 22 21 19 47 47 H 1.07996 * 120.03547 * 0.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1790 2.6096 0.0012 6 8 3.5726 3.6600 0.0018 7 6 5.6860 2.6095 0.0013 8 6 6.1960 4.0520 0.0014 9 7 7.6610 4.0519 0.0021 10 6 8.3349 5.2191 0.0028 11 8 7.7286 6.2695 0.0034 12 6 9.8420 5.2190 0.0029 13 6 10.3444 6.6398 0.0045 14 6 10.5752 7.2923 -1.1933 15 6 11.0367 8.5958 -1.1960 16 6 11.2624 9.2525 -0.0021 17 6 11.0371 8.5984 1.2018 18 8 11.2637 9.2392 2.3769 19 6 11.8207 10.4652 2.3081 20 1 11.9905 10.9279 1.3472 21 6 12.1754 11.1317 3.4710 22 7 11.9689 10.5679 4.6415 23 14 12.9477 12.8300 3.3756 24 1 13.0724 13.2378 1.9532 25 1 12.0901 13.8049 4.0962 26 1 14.2940 12.7974 4.0016 27 6 10.5741 7.2888 1.2013 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9564 -0.8899 35 1 3.9900 0.6023 0.0006 36 1 6.0493 2.0961 -0.8890 37 1 6.0493 2.0952 0.8910 38 1 5.8326 4.5657 0.8915 39 1 5.8327 4.5660 -0.8884 40 1 8.1459 3.2118 0.0020 41 1 10.2053 4.7057 -0.8874 42 1 10.2052 4.7047 0.8926 43 1 10.3946 6.7825 -2.1281 44 1 11.2163 9.1024 -2.1327 45 1 11.6179 10.2724 -0.0048 46 1 12.2174 11.0341 5.4550 47 1 10.3944 6.7786 2.1361 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089771288.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:11 Heat of formation + Delta-G solvation = -92.861930 kcal Electronic energy + Delta-G solvation = -26708.452543 eV Core-core repulsion = 22663.397925 eV Total energy + Delta-G solvation = -4045.054619 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.26222 -39.62891 -38.68221 -36.52566 -36.29634 -35.10145 -33.17700 -32.38166 -32.03795 -30.97086 -29.11242 -27.42326 -26.51596 -25.18199 -23.71387 -22.17890 -21.60013 -21.15320 -20.80043 -20.07419 -17.62066 -17.49229 -17.06735 -16.76661 -16.56890 -16.33922 -15.83954 -15.50990 -15.21230 -14.87799 -14.38918 -14.32665 -14.11140 -13.78259 -13.65993 -13.43910 -13.30745 -13.28554 -12.85804 -12.64392 -12.53715 -12.34043 -12.15439 -11.95071 -11.70857 -11.65560 -11.46158 -11.41039 -11.21105 -10.77251 -10.69576 -10.53595 -10.36953 -10.29990 -9.67271 -9.54894 -9.25199 -9.08937 -8.76457 -7.97712 -7.12939 -6.36659 -3.95409 2.16540 2.24685 2.47645 2.61382 2.84778 3.17600 3.19117 3.24869 3.34342 4.03589 4.22605 4.30327 4.39053 4.54342 4.63486 4.65389 4.67957 4.96768 4.99884 5.06018 5.06844 5.17845 5.19376 5.23819 5.32740 5.45177 5.54134 5.55934 5.63779 5.64380 5.73680 5.82272 5.85903 5.97306 6.01988 6.26452 6.37036 6.42686 6.74656 7.00073 7.00762 7.16001 7.35342 7.45205 7.49070 7.53014 7.80319 7.91950 8.08778 8.38625 9.09355 9.80997 10.81837 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021344 B = 0.001609 C = 0.001543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.551930 B =17393.529253 C =18145.935689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.135 4.135 3 C 0.116 3.884 4 N -0.735 5.735 5 C 0.516 3.484 6 O -0.530 6.530 7 C -0.152 4.152 8 C 0.134 3.866 9 N -0.742 5.742 10 C 0.512 3.488 11 O -0.514 6.514 12 C -0.092 4.092 13 C -0.034 4.034 14 C -0.196 4.196 15 C -0.075 4.075 16 C -0.230 4.230 17 C 0.154 3.846 18 O -0.181 6.181 19 C -0.390 4.390 20 H 0.092 0.908 21 C 0.038 3.962 22 N -0.865 5.865 23 Si 0.940 3.060 24 H -0.267 1.267 25 H -0.277 1.277 26 H -0.276 1.276 27 C -0.174 4.174 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.401 0.599 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.397 0.603 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.102 0.898 44 H 0.107 0.893 45 H 0.126 0.874 46 H 0.268 0.732 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.899 -25.511 -10.886 31.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.173 4.173 3 C -0.008 4.008 4 N -0.388 5.388 5 C 0.301 3.699 6 O -0.405 6.405 7 C -0.192 4.192 8 C 0.010 3.990 9 N -0.397 5.397 10 C 0.299 3.701 11 O -0.387 6.387 12 C -0.132 4.132 13 C -0.035 4.035 14 C -0.215 4.215 15 C -0.094 4.094 16 C -0.250 4.250 17 C 0.101 3.899 18 O -0.085 6.085 19 C -0.466 4.466 20 H 0.109 0.891 21 C -0.166 4.166 22 N -0.500 5.500 23 Si 0.765 3.235 24 H -0.191 1.191 25 H -0.202 1.202 26 H -0.202 1.202 27 C -0.193 4.193 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.235 0.765 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.231 0.769 41 H 0.116 0.884 42 H 0.118 0.882 43 H 0.121 0.879 44 H 0.125 0.875 45 H 0.144 0.856 46 H 0.078 0.922 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -14.815 -23.925 -10.398 30.000 hybrid contribution 0.767 -0.052 -0.071 0.772 sum -14.047 -23.978 -10.469 29.696 Atomic orbital electron populations 1.21685 0.94440 1.02250 1.02496 1.21734 0.97149 0.95721 1.02717 1.21432 0.79409 0.97230 1.02699 1.46018 1.07507 1.08679 1.76557 1.20462 0.89842 0.83662 0.75919 1.90785 1.70387 1.31138 1.48236 1.21814 0.92574 0.99716 1.05124 1.20954 0.79714 0.94230 1.04100 1.46000 1.06708 1.08901 1.78100 1.20773 0.90207 0.83286 0.75879 1.90787 1.70129 1.31068 1.46703 1.20581 0.91212 0.96920 1.04496 1.18668 0.98497 0.93213 0.93135 1.20349 1.09014 0.96082 0.96038 1.20674 0.97628 0.94261 0.96790 1.21174 1.10113 1.01544 0.92132 1.19279 0.92737 0.91305 0.86567 1.83976 1.69529 1.30226 1.24735 1.21367 1.39741 0.90807 0.94685 0.89088 1.25267 0.97226 0.99862 0.94206 1.70051 1.44708 1.37865 0.97395 0.85658 0.78625 0.80422 0.78771 1.19124 1.20212 1.20212 1.19945 1.08682 0.93484 0.97179 0.92112 0.92239 0.92278 0.91300 0.91260 0.91342 0.91376 0.76517 0.88133 0.88044 0.90625 0.90730 0.76915 0.88400 0.88244 0.87944 0.87497 0.85631 0.92203 0.86833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.51 9.91 37.16 0.37 -0.14 16 2 C -0.14 -0.44 6.05 -26.73 -0.16 -0.60 16 3 C 0.12 0.67 5.67 -4.04 -0.02 0.65 16 4 N -0.73 -4.05 5.56 -60.29 -0.33 -4.38 16 5 C 0.52 4.49 7.83 -10.98 -0.09 4.41 16 6 O -0.53 -7.34 15.98 5.56 0.09 -7.25 16 7 C -0.15 -0.90 5.81 -27.88 -0.16 -1.07 16 8 C 0.13 1.43 4.96 -4.04 -0.02 1.41 16 9 N -0.74 -7.45 5.56 -60.29 -0.33 -7.78 16 10 C 0.51 7.61 7.82 -10.98 -0.09 7.53 16 11 O -0.51 -10.61 16.03 5.56 0.09 -10.52 16 12 C -0.09 -1.23 5.83 -29.03 -0.17 -1.40 16 13 C -0.03 -0.65 4.37 -104.65 -0.46 -1.11 16 14 C -0.20 -3.65 9.70 -39.53 -0.38 -4.03 16 15 C -0.08 -1.50 10.04 -39.61 -0.40 -1.89 16 16 C -0.23 -5.36 9.17 -39.40 -0.36 -5.72 16 17 C 0.15 3.97 6.65 -39.11 -0.26 3.71 16 18 O -0.18 -5.41 9.76 0.05 0.00 -5.41 16 19 C -0.39 -11.34 9.49 30.89 0.29 -11.04 16 20 H 0.09 2.46 5.21 -52.49 -0.27 2.19 16 21 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 22 N -0.86 -26.12 13.67 55.48 0.76 -25.36 16 23 Si 0.94 21.23 29.55 -169.99 -5.02 16.21 16 24 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 25 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 26 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 27 C -0.17 -3.91 9.65 -39.39 -0.38 -4.29 16 28 H 0.06 0.17 8.14 -51.93 -0.42 -0.26 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.40 0.90 8.47 -40.82 -0.35 0.56 16 36 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 1.01 8.10 -51.92 -0.42 0.59 16 39 H 0.07 0.96 8.10 -51.93 -0.42 0.54 16 40 H 0.40 2.31 8.47 -40.82 -0.35 1.96 16 41 H 0.10 0.98 8.09 -51.93 -0.42 0.56 16 42 H 0.10 1.11 8.08 -51.93 -0.42 0.69 16 43 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 44 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 45 H 0.13 2.90 5.64 -52.48 -0.30 2.61 16 46 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 47 H 0.11 2.48 8.06 -52.49 -0.42 2.05 16 LS Contribution 401.79 15.07 6.05 6.05 Total: -1.00 -39.39 401.79 -8.23 -47.62 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -7.15 Total: 3.42 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: -2.38 Total: -12.60 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: 0.09 Total: -37.52 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: 0.18 Total: -23.18 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -39.39 -8.23 -47.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089771288.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.238 kcal (2) G-P(sol) polarization free energy of solvation -39.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds