Wall clock time and date at job start Tue Mar 31 2020 18:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47283 * 2 1 4 4 N 1.46500 * 109.47128 * 179.97438 * 3 2 1 5 5 C 1.34774 * 120.00119 * 180.02562 * 4 3 2 6 6 O 1.21282 * 120.00304 * 0.02562 * 5 4 3 7 7 C 1.50704 * 120.00135 * 180.02562 * 5 4 3 8 8 C 1.52996 * 109.47144 * 179.97438 * 7 5 4 9 9 N 1.46500 * 109.47128 * 179.97438 * 8 7 5 10 10 C 1.34774 * 120.00119 * 180.02562 * 9 8 7 11 11 O 1.21282 * 120.00304 * 0.02562 * 10 9 8 12 12 C 1.50704 * 120.00135 * 180.02562 * 10 9 8 13 13 C 1.50699 * 109.47208 * 180.02562 * 12 10 9 14 14 C 1.38328 * 119.96230 * 269.97915 * 13 12 10 15 15 C 1.38281 * 120.13505 * 180.02562 * 14 13 12 16 16 C 1.38120 * 120.06679 * 359.68445 * 15 14 13 17 17 C 1.38852 * 119.93490 * 0.58817 * 16 15 14 18 18 O 1.35752 * 120.07221 * 179.70368 * 17 16 15 19 19 C 1.34829 * 116.99954 * 354.17311 * 18 17 16 20 20 H 1.07998 * 119.99999 * 5.03596 * 19 18 17 21 21 C 1.38656 * 119.99670 * 185.03445 * 19 18 17 22 22 N 1.31550 * 120.00275 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99668 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47010 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46908 * 119.99967 * 23 21 19 26 26 H 1.48504 * 109.47373 * 240.00300 * 23 21 19 27 27 C 1.38073 * 119.96534 * 89.99715 * 13 12 10 28 28 H 1.09001 * 109.47412 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47167 * 300.00021 * 1 2 3 30 30 H 1.09003 * 109.47125 * 59.99737 * 1 2 3 31 31 H 1.09002 * 109.46489 * 240.00201 * 2 1 3 32 32 H 1.08998 * 109.47133 * 120.00733 * 2 1 3 33 33 H 1.09007 * 109.47155 * 60.00137 * 3 2 1 34 34 H 1.08998 * 109.47635 * 300.00426 * 3 2 1 35 35 H 0.97009 * 119.99766 * 0.02562 * 4 3 2 36 36 H 1.09002 * 109.46571 * 59.99894 * 7 5 4 37 37 H 1.08998 * 109.47190 * 300.00341 * 7 5 4 38 38 H 1.09008 * 109.46644 * 60.00215 * 8 7 5 39 39 H 1.08998 * 109.47635 * 300.00411 * 8 7 5 40 40 H 0.97001 * 119.99420 * 0.02562 * 9 8 7 41 41 H 1.09002 * 109.46571 * 59.99894 * 12 10 9 42 42 H 1.08992 * 109.46782 * 300.00158 * 12 10 9 43 43 H 1.08001 * 119.93314 * 0.02562 * 14 13 12 44 44 H 1.07993 * 119.96315 * 179.97438 * 15 14 13 45 45 H 1.08006 * 120.03715 * 180.31908 * 16 15 14 46 46 H 0.96999 * 119.99936 * 179.97438 * 22 21 19 47 47 H 1.07996 * 120.03547 * 0.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1790 2.6096 0.0012 6 8 3.5726 3.6600 0.0018 7 6 5.6860 2.6095 0.0013 8 6 6.1960 4.0520 0.0014 9 7 7.6610 4.0519 0.0021 10 6 8.3349 5.2191 0.0028 11 8 7.7286 6.2695 0.0034 12 6 9.8420 5.2190 0.0029 13 6 10.3444 6.6398 0.0045 14 6 10.5752 7.2923 -1.1933 15 6 11.0367 8.5958 -1.1960 16 6 11.2624 9.2525 -0.0021 17 6 11.0371 8.5984 1.2018 18 8 11.2637 9.2392 2.3769 19 6 11.8207 10.4652 2.3081 20 1 11.9905 10.9279 1.3472 21 6 12.1754 11.1317 3.4710 22 7 11.9689 10.5679 4.6415 23 14 12.9477 12.8300 3.3756 24 1 13.0724 13.2378 1.9532 25 1 12.0901 13.8049 4.0962 26 1 14.2940 12.7974 4.0016 27 6 10.5741 7.2888 1.2013 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9564 -0.8899 35 1 3.9900 0.6023 0.0006 36 1 6.0493 2.0961 -0.8890 37 1 6.0493 2.0952 0.8910 38 1 5.8326 4.5657 0.8915 39 1 5.8327 4.5660 -0.8884 40 1 8.1459 3.2118 0.0020 41 1 10.2053 4.7057 -0.8874 42 1 10.2052 4.7047 0.8926 43 1 10.3946 6.7825 -2.1281 44 1 11.2163 9.1024 -2.1327 45 1 11.6179 10.2724 -0.0048 46 1 12.2174 11.0341 5.4550 47 1 10.3944 6.7786 2.1361 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089771288.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:10 Heat of formation + Delta-G solvation = -123.704525 kcal Electronic energy + Delta-G solvation = -26709.789978 eV Core-core repulsion = 22663.397925 eV Total energy + Delta-G solvation = -4046.392054 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.19933 -40.81655 -40.27544 -38.21732 -36.91917 -36.12951 -34.34250 -33.72332 -33.49572 -31.86939 -30.83498 -28.63197 -27.40865 -27.05943 -24.54977 -23.25786 -22.69852 -22.55919 -21.70199 -21.12569 -19.50035 -18.80260 -18.27881 -17.85152 -17.23023 -16.97628 -16.80380 -16.66032 -16.51762 -16.23528 -16.06178 -15.67950 -15.49541 -15.03275 -14.81285 -14.54794 -14.50846 -14.27995 -13.96304 -13.83062 -13.59843 -13.43534 -13.06833 -12.97698 -12.80895 -12.79476 -12.47929 -12.42740 -12.35773 -12.20812 -12.07836 -12.04417 -11.75928 -11.20001 -11.13619 -10.88918 -10.79248 -10.17731 -10.08030 -9.62476 -8.96823 -8.46950 -6.15503 0.52977 0.76882 1.33744 1.42695 1.52717 1.59245 1.69964 1.92530 2.17771 2.49180 2.86729 3.19400 3.45565 3.62283 3.82986 3.90355 4.03794 4.04944 4.09624 4.12342 4.19977 4.33400 4.34762 4.47968 4.52888 4.60030 4.64466 4.68366 4.75237 4.76629 4.85588 4.86947 4.96465 5.09251 5.13794 5.14554 5.23832 5.32209 5.33052 5.43288 5.47517 5.66222 5.73913 5.76568 6.03337 6.25257 6.52218 6.63441 6.97669 7.24235 7.36296 7.79540 8.76923 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021344 B = 0.001609 C = 0.001543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.551930 B =17393.529253 C =18145.935689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C 0.113 3.887 4 N -0.715 5.715 5 C 0.508 3.492 6 O -0.594 6.594 7 C -0.134 4.134 8 C 0.135 3.865 9 N -0.712 5.712 10 C 0.510 3.490 11 O -0.584 6.584 12 C -0.087 4.087 13 C -0.029 4.029 14 C -0.180 4.180 15 C -0.075 4.075 16 C -0.248 4.248 17 C 0.110 3.890 18 O -0.236 6.236 19 C -0.414 4.414 20 H 0.100 0.900 21 C -0.024 4.024 22 N -0.922 5.922 23 Si 1.021 2.979 24 H -0.252 1.252 25 H -0.269 1.269 26 H -0.265 1.265 27 C -0.192 4.192 28 H 0.071 0.929 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.050 0.950 34 H 0.052 0.948 35 H 0.421 0.579 36 H 0.141 0.859 37 H 0.136 0.864 38 H 0.039 0.961 39 H 0.048 0.952 40 H 0.424 0.576 41 H 0.149 0.851 42 H 0.126 0.874 43 H 0.149 0.851 44 H 0.145 0.855 45 H 0.116 0.884 46 H 0.272 0.728 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.078 -28.923 -13.730 34.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.162 4.162 3 C -0.011 4.011 4 N -0.368 5.368 5 C 0.295 3.705 6 O -0.474 6.474 7 C -0.174 4.174 8 C 0.010 3.990 9 N -0.367 5.367 10 C 0.298 3.702 11 O -0.463 6.463 12 C -0.126 4.126 13 C -0.030 4.030 14 C -0.198 4.198 15 C -0.093 4.093 16 C -0.267 4.267 17 C 0.060 3.940 18 O -0.143 6.143 19 C -0.490 4.490 20 H 0.117 0.883 21 C -0.221 4.221 22 N -0.560 5.560 23 Si 0.840 3.160 24 H -0.176 1.176 25 H -0.194 1.194 26 H -0.189 1.189 27 C -0.212 4.212 28 H 0.090 0.910 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.259 0.741 36 H 0.159 0.841 37 H 0.153 0.847 38 H 0.057 0.943 39 H 0.067 0.933 40 H 0.263 0.737 41 H 0.167 0.833 42 H 0.144 0.856 43 H 0.167 0.833 44 H 0.163 0.837 45 H 0.134 0.866 46 H 0.081 0.919 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -13.982 -27.502 -13.292 33.593 hybrid contribution 0.362 0.720 0.588 0.998 sum -13.619 -26.781 -12.704 32.621 Atomic orbital electron populations 1.21715 0.94673 1.02772 1.02000 1.21670 0.96852 0.93747 1.03927 1.21441 0.79647 0.98867 1.01123 1.45882 1.07457 1.08799 1.74709 1.21019 0.91104 0.83422 0.74915 1.90772 1.71759 1.33496 1.51396 1.21746 0.90244 0.96734 1.08656 1.20820 0.79814 0.97142 1.01209 1.45672 1.06472 1.08878 1.75680 1.21072 0.90862 0.83394 0.74909 1.90782 1.71465 1.33742 1.50318 1.20707 0.89857 0.93738 1.08337 1.19267 0.96122 0.95880 0.91685 1.21002 1.05599 0.95473 0.97760 1.21139 0.96355 0.95028 0.96805 1.21293 1.11021 1.01527 0.92836 1.19904 0.94679 0.92852 0.86579 1.83932 1.72096 1.31129 1.27156 1.21866 1.40317 0.91296 0.95564 0.88310 1.26611 0.97502 1.04591 0.93396 1.70195 1.47128 1.40337 0.98383 0.84512 0.77790 0.74180 0.79564 1.17561 1.19446 1.18932 1.20245 1.09241 0.92822 0.98859 0.91015 0.92900 0.92739 0.89886 0.90092 0.93198 0.92915 0.74119 0.84090 0.84654 0.94257 0.93341 0.73716 0.83279 0.85597 0.83334 0.83744 0.86571 0.91869 0.87495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.91 71.98 0.71 -0.16 16 2 C -0.12 -0.57 6.05 30.59 0.19 -0.38 16 3 C 0.11 1.26 5.67 86.38 0.49 1.75 16 4 N -0.72 -6.44 5.56 -463.06 -2.57 -9.01 16 5 C 0.51 8.27 7.83 87.66 0.69 8.95 16 6 O -0.59 -17.20 15.98 -3.04 -0.05 -17.25 16 7 C -0.13 -1.15 5.81 29.85 0.17 -0.98 16 8 C 0.13 2.74 4.96 86.38 0.43 3.17 16 9 N -0.71 -12.01 5.56 -463.06 -2.57 -14.58 16 10 C 0.51 13.99 7.82 87.66 0.69 14.68 16 11 O -0.58 -24.23 16.03 -3.04 -0.05 -24.27 16 12 C -0.09 -1.96 5.83 29.10 0.17 -1.79 16 13 C -0.03 -1.03 4.37 -19.88 -0.09 -1.12 16 14 C -0.18 -6.07 9.70 22.30 0.22 -5.85 16 15 C -0.08 -2.84 10.04 22.25 0.22 -2.62 16 16 C -0.25 -11.80 9.17 22.39 0.21 -11.60 16 17 C 0.11 5.95 6.65 22.58 0.15 6.10 16 18 O -0.24 -15.20 9.76 -22.74 -0.22 -15.42 16 19 C -0.41 -25.57 9.49 67.92 0.64 -24.92 16 20 H 0.10 5.65 5.21 -2.91 -0.02 5.63 16 21 C -0.02 -1.43 5.49 84.83 0.47 -0.96 16 22 N -0.92 -58.84 13.67 21.61 0.30 -58.54 16 23 Si 1.02 44.90 29.55 68.60 2.03 46.93 16 24 H -0.25 -10.31 7.11 99.48 0.71 -9.60 16 25 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 26 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 27 C -0.19 -8.91 9.65 22.39 0.22 -8.69 16 28 H 0.07 0.26 8.14 -2.39 -0.02 0.25 16 29 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.08 0.19 8.14 -2.39 -0.02 0.17 16 32 H 0.08 0.22 8.14 -2.39 -0.02 0.20 16 33 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 34 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.42 0.34 8.47 -92.70 -0.79 -0.45 16 36 H 0.14 0.17 8.14 -2.39 -0.02 0.15 16 37 H 0.14 0.34 8.14 -2.39 -0.02 0.32 16 38 H 0.04 1.10 8.10 -2.38 -0.02 1.08 16 39 H 0.05 1.26 8.10 -2.39 -0.02 1.24 16 40 H 0.42 2.63 8.47 -92.71 -0.79 1.84 16 41 H 0.15 1.91 8.09 -2.39 -0.02 1.89 16 42 H 0.13 2.25 8.08 -2.39 -0.02 2.23 16 43 H 0.15 3.72 8.06 -2.91 -0.02 3.70 16 44 H 0.14 4.31 8.06 -2.91 -0.02 4.29 16 45 H 0.12 5.61 5.64 -2.91 -0.02 5.59 16 46 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 47 H 0.11 4.92 8.06 -2.91 -0.02 4.89 16 Total: -1.00 -98.79 401.79 1.85 -96.94 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: -0.57 Total: 19.63 kcal Atomic # 6 Polarization: -29.99 SS G_CDS: 5.57 Total: -24.42 kcal Atomic # 7 Polarization: -77.28 SS G_CDS: -4.85 Total: -82.13 kcal Atomic # 8 Polarization: -56.62 SS G_CDS: -0.32 Total: -56.94 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -98.79 1.85 -96.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089771288.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.761 kcal (2) G-P(sol) polarization free energy of solvation -98.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds