Wall clock time and date at job start Tue Mar 31 2020 18:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46760 * 2 1 4 4 N 1.46501 * 109.47275 * 179.97438 * 3 2 1 5 5 C 1.37096 * 120.00109 * 96.42890 * 4 3 2 6 6 H 1.08000 * 119.99914 * 158.16487 * 5 4 3 7 7 C 1.38950 * 119.99939 * 338.17029 * 5 4 3 8 8 N 1.31406 * 120.00139 * 356.84916 * 7 5 4 9 9 Si 1.86799 * 119.99657 * 176.84314 * 7 5 4 10 10 H 1.48501 * 109.47122 * 90.00350 * 9 7 5 11 11 H 1.48506 * 109.47183 * 209.99851 * 9 7 5 12 12 H 1.48496 * 109.47680 * 330.00168 * 9 7 5 13 13 C 1.34774 * 119.99684 * 276.43185 * 4 3 2 14 14 O 1.21294 * 120.00324 * 3.97655 * 13 4 3 15 15 C 1.50708 * 119.99732 * 183.98063 * 13 4 3 16 16 C 1.53069 * 109.44187 * 86.31431 * 15 13 4 17 17 C 1.53195 * 109.29360 * 181.23306 * 16 15 13 18 18 N 1.46923 * 108.89271 * 305.57890 * 17 16 15 19 19 C 1.34777 * 120.63002 * 233.51254 * 18 17 16 20 20 O 1.21609 * 119.99992 * 173.43349 * 19 18 17 21 21 C 1.47380 * 120.00057 * 353.42977 * 19 18 17 22 22 C 1.47020 * 127.19481 * 150.04879 * 21 19 18 23 23 C 1.34180 * 105.95539 * 179.97438 * 22 21 19 24 24 O 1.34215 * 109.12124 * 0.02562 * 23 22 21 25 25 C 1.33655 * 110.91129 * 359.72484 * 24 23 22 26 26 C 1.46927 * 118.74046 * 53.53887 * 18 17 16 27 27 C 1.53048 * 109.45507 * 206.51812 * 15 13 4 28 28 H 1.09001 * 109.46570 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47619 * 300.00043 * 1 2 3 30 30 H 1.08998 * 109.47305 * 60.00934 * 1 2 3 31 31 H 1.08994 * 109.47619 * 239.99957 * 2 1 3 32 32 H 1.08998 * 109.47305 * 119.99066 * 2 1 3 33 33 H 1.09002 * 109.47225 * 59.99957 * 3 2 1 34 34 H 1.09000 * 109.47158 * 299.99804 * 3 2 1 35 35 H 0.96996 * 120.00274 * 180.02562 * 8 7 5 36 36 H 1.08997 * 109.45510 * 326.48638 * 15 13 4 37 37 H 1.09004 * 109.39332 * 61.36068 * 16 15 13 38 38 H 1.08998 * 109.62558 * 301.25026 * 16 15 13 39 39 H 1.08998 * 109.58737 * 185.71950 * 17 16 15 40 40 H 1.09000 * 109.58081 * 65.43603 * 17 16 15 41 41 H 1.08002 * 127.02141 * 0.02562 * 22 21 19 42 42 H 1.08001 * 125.43717 * 179.97438 * 23 22 21 43 43 H 1.07995 * 125.80162 * 180.29084 * 25 24 23 44 44 H 1.09006 * 109.58520 * 66.17492 * 26 18 17 45 45 H 1.08993 * 109.58558 * 186.45650 * 26 18 17 46 46 H 1.08998 * 109.49869 * 58.67707 * 27 15 13 47 47 H 1.08990 * 109.52309 * 298.59105 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4427 0.0006 5 6 4.1909 1.5755 -1.1789 6 1 5.2128 1.9250 -1.1729 7 6 3.5715 1.2605 -2.3821 8 7 2.3497 0.7768 -2.3853 9 14 4.4755 1.5250 -3.9953 10 1 5.2296 0.2951 -4.3475 11 1 3.4948 1.8285 -5.0684 12 1 5.4207 2.6614 -3.8526 13 6 4.1783 1.3122 1.1608 14 8 3.5736 1.1223 2.1950 15 6 5.6826 1.4022 1.1731 16 6 6.1043 2.8685 1.2959 17 6 7.6335 2.9587 1.2771 18 7 8.1746 2.0825 2.3251 19 6 9.0340 2.5628 3.2456 20 8 9.3820 1.8621 4.1766 21 6 9.5521 3.9371 3.1238 22 6 9.9558 4.8348 4.2159 23 6 10.3582 5.9723 3.6288 24 8 10.2360 5.8472 2.2980 25 6 9.7625 4.6401 1.9738 26 6 7.7616 0.6727 2.3502 27 6 6.2311 0.6075 2.3606 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5137 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 1.9174 0.5565 -3.2252 36 1 6.0786 0.9889 0.2456 37 1 5.7273 3.2762 2.2339 38 1 5.6960 3.4380 0.4610 39 1 7.9412 3.9872 1.4658 40 1 8.0064 2.6383 0.3043 41 1 9.9339 4.6218 5.2745 42 1 10.7214 6.8488 4.1447 43 1 9.5761 4.2829 0.9719 44 1 8.1431 0.1644 1.4646 45 1 8.1560 0.1923 3.2455 46 1 5.9107 -0.4314 2.2822 47 1 5.8550 1.0351 3.2899 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000098022342.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:47 Heat of formation + Delta-G solvation = -41.462220 kcal Electronic energy + Delta-G solvation = -29742.464993 eV Core-core repulsion = 25699.639233 eV Total energy + Delta-G solvation = -4042.825760 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.75656 -40.04800 -38.76697 -36.79400 -35.16701 -33.38380 -32.65091 -32.00196 -31.46376 -31.00593 -29.69231 -26.60509 -25.58823 -24.38507 -23.34368 -22.84110 -21.63316 -20.97366 -20.25525 -19.50936 -19.00365 -17.72787 -17.12273 -16.45038 -16.23991 -16.15662 -15.78533 -15.00518 -14.68398 -14.44997 -14.35812 -14.08942 -13.68108 -13.54598 -13.43431 -13.15712 -13.01887 -12.91841 -12.72951 -12.46912 -12.11723 -11.97607 -11.63537 -11.35780 -11.30516 -11.08914 -10.96807 -10.71757 -10.62430 -10.40292 -10.22906 -10.20437 -10.08617 -10.04347 -9.83103 -9.61824 -8.94749 -8.80493 -8.67327 -8.25387 -7.65429 -6.31527 -4.01406 1.23469 1.92056 2.69082 2.94144 3.04573 3.13699 3.15577 3.24354 3.84109 4.01494 4.35324 4.48127 4.70424 4.77307 4.87632 5.00746 5.17208 5.23135 5.29301 5.45719 5.48107 5.52195 5.63231 5.70130 5.75738 5.89417 6.05384 6.08746 6.13279 6.16408 6.21124 6.28969 6.37699 6.47522 6.51239 6.70177 6.74347 6.75581 6.79559 6.94738 7.05281 7.13814 7.27881 7.41708 7.52359 7.79992 7.87686 8.18015 8.43635 9.03256 9.52148 9.92367 10.60691 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014561 B = 0.003274 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.472385 B = 8550.139861 C = 9560.088266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.120 4.120 3 C 0.147 3.853 4 N -0.443 5.443 5 C -0.329 4.329 6 H 0.096 0.904 7 C 0.034 3.966 8 N -0.864 5.864 9 Si 0.922 3.078 10 H -0.278 1.278 11 H -0.283 1.283 12 H -0.271 1.271 13 C 0.462 3.538 14 O -0.606 6.606 15 C -0.092 4.092 16 C -0.119 4.119 17 C 0.094 3.906 18 N -0.602 5.602 19 C 0.586 3.414 20 O -0.541 6.541 21 C -0.227 4.227 22 C -0.168 4.168 23 C -0.041 4.041 24 O -0.175 6.175 25 C 0.012 3.988 26 C 0.114 3.886 27 C -0.112 4.112 28 H 0.036 0.964 29 H 0.034 0.966 30 H 0.051 0.949 31 H 0.099 0.901 32 H 0.030 0.970 33 H 0.027 0.973 34 H 0.096 0.904 35 H 0.267 0.733 36 H 0.093 0.907 37 H 0.066 0.934 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.075 0.925 41 H 0.158 0.842 42 H 0.208 0.792 43 H 0.217 0.783 44 H 0.069 0.931 45 H 0.092 0.908 46 H 0.075 0.925 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.577 7.442 2.903 14.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.158 4.158 3 C 0.024 3.976 4 N -0.160 5.160 5 C -0.457 4.457 6 H 0.114 0.886 7 C -0.170 4.170 8 N -0.503 5.503 9 Si 0.748 3.252 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.196 1.196 13 C 0.250 3.750 14 O -0.493 6.493 15 C -0.114 4.114 16 C -0.157 4.157 17 C -0.029 4.029 18 N -0.335 5.335 19 C 0.375 3.625 20 O -0.420 6.420 21 C -0.232 4.232 22 C -0.188 4.188 23 C -0.107 4.107 24 O -0.071 6.071 25 C -0.057 4.057 26 C -0.008 4.008 27 C -0.150 4.150 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.117 0.883 32 H 0.048 0.952 33 H 0.046 0.954 34 H 0.114 0.886 35 H 0.078 0.922 36 H 0.111 0.889 37 H 0.085 0.915 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.094 0.906 41 H 0.175 0.825 42 H 0.225 0.775 43 H 0.233 0.767 44 H 0.088 0.912 45 H 0.110 0.890 46 H 0.094 0.906 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 11.355 7.144 3.514 13.868 hybrid contribution 0.171 -0.055 -0.908 0.926 sum 11.526 7.089 2.605 13.780 Atomic orbital electron populations 1.21576 0.97889 0.99580 1.00213 1.21868 0.93508 0.98619 1.01837 1.21188 0.80011 0.96822 0.99597 1.43776 1.05564 1.61316 1.05328 1.19639 0.98495 1.44199 0.83383 0.88643 1.25330 0.96226 0.95859 0.99580 1.70072 1.12305 1.41130 1.26757 0.86015 0.79014 0.78660 0.81463 1.20407 1.20855 1.19594 1.20035 0.88754 0.82089 0.84098 1.90530 1.70126 1.55509 1.33115 1.21042 0.94904 0.95751 0.99654 1.21785 0.93642 0.96922 1.03381 1.22222 0.95202 0.94720 0.90737 1.47991 1.44398 1.11350 1.29790 1.17316 0.78514 0.85073 0.81561 1.90763 1.59884 1.59418 1.31925 1.21528 1.10858 0.96819 0.93981 1.22779 1.03324 0.92662 0.99998 1.23931 1.05865 1.00956 0.79964 1.83810 1.65036 1.32858 1.25358 1.24761 0.98439 0.82744 0.99787 1.21723 0.95569 0.80440 1.03047 1.21700 0.92893 1.01147 0.99282 0.94493 0.94656 0.93034 0.88296 0.95166 0.95426 0.88599 0.92244 0.88881 0.91497 0.89576 0.89265 0.90641 0.82463 0.77543 0.76685 0.91239 0.89007 0.90636 0.90877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.60 9.91 37.16 0.37 -2.23 16 2 C -0.12 -2.75 5.63 -26.73 -0.15 -2.90 16 3 C 0.15 3.51 4.47 -4.04 -0.02 3.49 16 4 N -0.44 -10.59 2.64 -114.81 -0.30 -10.89 16 5 C -0.33 -7.61 8.90 -14.93 -0.13 -7.74 16 6 H 0.10 2.02 5.83 -52.49 -0.31 1.72 16 7 C 0.03 0.78 5.26 -17.47 -0.09 0.69 16 8 N -0.86 -20.64 7.81 55.50 0.43 -20.21 16 9 Si 0.92 18.03 29.55 -169.99 -5.02 13.00 16 10 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 11 H -0.28 -5.66 7.11 56.52 0.40 -5.25 16 12 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 13 C 0.46 10.67 6.67 -10.98 -0.07 10.60 16 14 O -0.61 -15.80 15.73 5.55 0.09 -15.72 16 15 C -0.09 -1.67 1.66 -91.71 -0.15 -1.82 16 16 C -0.12 -1.83 5.24 -26.59 -0.14 -1.97 16 17 C 0.09 1.12 5.24 -3.71 -0.02 1.10 16 18 N -0.60 -8.42 2.97 -174.05 -0.52 -8.93 16 19 C 0.59 8.92 7.64 -12.54 -0.10 8.82 16 20 O -0.54 -10.03 16.50 5.27 0.09 -9.94 16 21 C -0.23 -2.84 5.70 -103.28 -0.59 -3.43 16 22 C -0.17 -1.83 11.12 -37.45 -0.42 -2.25 16 23 C -0.04 -0.35 12.03 29.30 0.35 0.01 16 24 O -0.18 -1.68 10.52 7.65 0.08 -1.60 16 25 C 0.01 0.12 9.72 30.08 0.29 0.41 16 26 C 0.11 1.64 6.44 -3.71 -0.02 1.62 16 27 C -0.11 -1.89 4.89 -26.61 -0.13 -2.02 16 28 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.10 2.44 5.95 -51.93 -0.31 2.14 16 32 H 0.03 0.73 7.99 -51.93 -0.41 0.31 16 33 H 0.03 0.67 7.68 -51.93 -0.40 0.27 16 34 H 0.10 2.37 6.12 -51.93 -0.32 2.05 16 35 H 0.27 6.13 8.31 -40.82 -0.34 5.79 16 36 H 0.09 1.67 6.57 -51.93 -0.34 1.32 16 37 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.09 1.34 7.76 -51.93 -0.40 0.93 16 39 H 0.09 0.91 4.31 -51.93 -0.22 0.68 16 40 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.16 1.59 8.06 -52.49 -0.42 1.17 16 42 H 0.21 0.88 8.06 -52.49 -0.42 0.46 16 43 H 0.22 1.48 6.51 -52.49 -0.34 1.14 16 44 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.09 1.38 7.00 -51.93 -0.36 1.01 16 46 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 47 H 0.07 1.38 7.91 -51.93 -0.41 0.97 16 LS Contribution 372.60 15.07 5.62 5.62 Total: -1.00 -30.68 372.60 -7.33 -38.01 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -6.77 Total: 8.27 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: -1.02 Total: 2.39 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: -0.39 Total: -40.03 kcal Atomic # 8 Polarization: -27.51 SS G_CDS: 0.25 Total: -27.26 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.02 Total: 13.00 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.68 -7.33 -38.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098022342.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.456 kcal (2) G-P(sol) polarization free energy of solvation -30.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds