Wall clock time and date at job start Tue Mar 31 2020 18:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46760 * 2 1 4 4 N 1.46501 * 109.47275 * 179.97438 * 3 2 1 5 5 C 1.37096 * 120.00109 * 96.42890 * 4 3 2 6 6 H 1.08000 * 119.99914 * 158.16487 * 5 4 3 7 7 C 1.38950 * 119.99939 * 338.17029 * 5 4 3 8 8 N 1.31406 * 120.00139 * 356.84916 * 7 5 4 9 9 Si 1.86799 * 119.99657 * 176.84314 * 7 5 4 10 10 H 1.48501 * 109.47122 * 90.00350 * 9 7 5 11 11 H 1.48506 * 109.47183 * 209.99851 * 9 7 5 12 12 H 1.48496 * 109.47680 * 330.00168 * 9 7 5 13 13 C 1.34774 * 119.99684 * 276.43185 * 4 3 2 14 14 O 1.21294 * 120.00324 * 3.97655 * 13 4 3 15 15 C 1.50708 * 119.99732 * 183.98063 * 13 4 3 16 16 C 1.53069 * 109.44187 * 86.31431 * 15 13 4 17 17 C 1.53195 * 109.29360 * 181.23306 * 16 15 13 18 18 N 1.46923 * 108.89271 * 305.57890 * 17 16 15 19 19 C 1.34777 * 120.63002 * 233.51254 * 18 17 16 20 20 O 1.21609 * 119.99992 * 173.43349 * 19 18 17 21 21 C 1.47380 * 120.00057 * 353.42977 * 19 18 17 22 22 C 1.47020 * 127.19481 * 150.04879 * 21 19 18 23 23 C 1.34180 * 105.95539 * 179.97438 * 22 21 19 24 24 O 1.34215 * 109.12124 * 0.02562 * 23 22 21 25 25 C 1.33655 * 110.91129 * 359.72484 * 24 23 22 26 26 C 1.46927 * 118.74046 * 53.53887 * 18 17 16 27 27 C 1.53048 * 109.45507 * 206.51812 * 15 13 4 28 28 H 1.09001 * 109.46570 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47619 * 300.00043 * 1 2 3 30 30 H 1.08998 * 109.47305 * 60.00934 * 1 2 3 31 31 H 1.08994 * 109.47619 * 239.99957 * 2 1 3 32 32 H 1.08998 * 109.47305 * 119.99066 * 2 1 3 33 33 H 1.09002 * 109.47225 * 59.99957 * 3 2 1 34 34 H 1.09000 * 109.47158 * 299.99804 * 3 2 1 35 35 H 0.96996 * 120.00274 * 180.02562 * 8 7 5 36 36 H 1.08997 * 109.45510 * 326.48638 * 15 13 4 37 37 H 1.09004 * 109.39332 * 61.36068 * 16 15 13 38 38 H 1.08998 * 109.62558 * 301.25026 * 16 15 13 39 39 H 1.08998 * 109.58737 * 185.71950 * 17 16 15 40 40 H 1.09000 * 109.58081 * 65.43603 * 17 16 15 41 41 H 1.08002 * 127.02141 * 0.02562 * 22 21 19 42 42 H 1.08001 * 125.43717 * 179.97438 * 23 22 21 43 43 H 1.07995 * 125.80162 * 180.29084 * 25 24 23 44 44 H 1.09006 * 109.58520 * 66.17492 * 26 18 17 45 45 H 1.08993 * 109.58558 * 186.45650 * 26 18 17 46 46 H 1.08998 * 109.49869 * 58.67707 * 27 15 13 47 47 H 1.08990 * 109.52309 * 298.59105 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4427 0.0006 5 6 4.1909 1.5755 -1.1789 6 1 5.2128 1.9250 -1.1729 7 6 3.5715 1.2605 -2.3821 8 7 2.3497 0.7768 -2.3853 9 14 4.4755 1.5250 -3.9953 10 1 5.2296 0.2951 -4.3475 11 1 3.4948 1.8285 -5.0684 12 1 5.4207 2.6614 -3.8526 13 6 4.1783 1.3122 1.1608 14 8 3.5736 1.1223 2.1950 15 6 5.6826 1.4022 1.1731 16 6 6.1043 2.8685 1.2959 17 6 7.6335 2.9587 1.2771 18 7 8.1746 2.0825 2.3251 19 6 9.0340 2.5628 3.2456 20 8 9.3820 1.8621 4.1766 21 6 9.5521 3.9371 3.1238 22 6 9.9558 4.8348 4.2159 23 6 10.3582 5.9723 3.6288 24 8 10.2360 5.8472 2.2980 25 6 9.7625 4.6401 1.9738 26 6 7.7616 0.6727 2.3502 27 6 6.2311 0.6075 2.3606 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5137 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 1.9174 0.5565 -3.2252 36 1 6.0786 0.9889 0.2456 37 1 5.7273 3.2762 2.2339 38 1 5.6960 3.4380 0.4610 39 1 7.9412 3.9872 1.4658 40 1 8.0064 2.6383 0.3043 41 1 9.9339 4.6218 5.2745 42 1 10.7214 6.8488 4.1447 43 1 9.5761 4.2829 0.9719 44 1 8.1431 0.1644 1.4646 45 1 8.1560 0.1923 3.2455 46 1 5.9107 -0.4314 2.2822 47 1 5.8550 1.0351 3.2899 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000098022342.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:46 Heat of formation + Delta-G solvation = -59.065495 kcal Electronic energy + Delta-G solvation = -29743.228328 eV Core-core repulsion = 25699.639233 eV Total energy + Delta-G solvation = -4043.589095 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.51011 -41.34857 -40.36598 -38.16966 -36.98515 -34.57408 -34.03571 -33.51790 -33.04222 -32.22685 -30.55201 -28.09734 -27.20834 -25.96298 -24.52965 -24.01306 -22.55690 -22.31525 -21.68575 -20.95870 -20.40726 -18.87316 -18.47243 -17.91675 -17.59252 -17.05072 -16.83913 -16.23104 -16.13535 -16.02216 -15.70508 -15.50701 -15.36890 -14.82343 -14.74724 -14.62570 -14.26203 -14.06976 -13.86252 -13.61292 -13.48302 -13.32607 -13.10363 -12.98288 -12.84305 -12.64560 -12.38797 -12.36369 -12.20168 -12.02620 -11.94017 -11.62202 -11.55452 -11.43098 -11.17456 -10.77153 -10.65974 -10.23478 -9.76843 -9.61173 -9.52288 -8.08250 -5.84738 0.40632 1.15071 1.50938 1.56836 1.66334 1.77670 2.07630 2.09987 2.23104 2.37597 3.02472 3.23686 3.45993 3.75045 3.81229 3.87713 4.02065 4.04562 4.11335 4.31965 4.33986 4.43868 4.49648 4.52864 4.57609 4.69973 4.72260 4.74120 4.76512 4.78930 4.85658 4.93410 5.01743 5.06434 5.13599 5.16735 5.27252 5.33199 5.33736 5.37679 5.49003 5.51848 5.64181 5.93506 6.00746 6.01876 6.32390 6.59977 7.05639 7.22778 7.69377 8.10525 8.84652 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014561 B = 0.003274 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.472385 B = 8550.139861 C = 9560.088266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.109 4.109 3 C 0.150 3.850 4 N -0.452 5.452 5 C -0.346 4.346 6 H 0.117 0.883 7 C -0.008 4.008 8 N -0.887 5.887 9 Si 0.990 3.010 10 H -0.279 1.279 11 H -0.291 1.291 12 H -0.253 1.253 13 C 0.446 3.554 14 O -0.647 6.647 15 C -0.083 4.083 16 C -0.112 4.112 17 C 0.099 3.901 18 N -0.602 5.602 19 C 0.583 3.417 20 O -0.587 6.587 21 C -0.265 4.265 22 C -0.203 4.203 23 C -0.018 4.018 24 O -0.175 6.175 25 C 0.034 3.966 26 C 0.122 3.878 27 C -0.103 4.103 28 H 0.055 0.945 29 H 0.042 0.958 30 H 0.054 0.946 31 H 0.083 0.917 32 H 0.005 0.995 33 H 0.012 0.988 34 H 0.088 0.912 35 H 0.266 0.734 36 H 0.104 0.896 37 H 0.044 0.956 38 H 0.090 0.910 39 H 0.113 0.887 40 H 0.110 0.890 41 H 0.153 0.847 42 H 0.249 0.751 43 H 0.248 0.752 44 H 0.097 0.903 45 H 0.081 0.919 46 H 0.066 0.934 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.695 9.207 0.611 16.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.148 4.148 3 C 0.026 3.974 4 N -0.168 5.168 5 C -0.473 4.473 6 H 0.135 0.865 7 C -0.209 4.209 8 N -0.526 5.526 9 Si 0.815 3.185 10 H -0.205 1.205 11 H -0.217 1.217 12 H -0.176 1.176 13 C 0.236 3.764 14 O -0.537 6.537 15 C -0.104 4.104 16 C -0.151 4.151 17 C -0.022 4.022 18 N -0.334 5.334 19 C 0.374 3.626 20 O -0.469 6.469 21 C -0.269 4.269 22 C -0.222 4.222 23 C -0.083 4.083 24 O -0.069 6.069 25 C -0.036 4.036 26 C 0.000 4.000 27 C -0.142 4.142 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.101 0.899 32 H 0.024 0.976 33 H 0.030 0.970 34 H 0.106 0.894 35 H 0.077 0.923 36 H 0.122 0.878 37 H 0.063 0.937 38 H 0.108 0.892 39 H 0.131 0.869 40 H 0.128 0.872 41 H 0.170 0.830 42 H 0.265 0.735 43 H 0.263 0.737 44 H 0.115 0.885 45 H 0.100 0.900 46 H 0.085 0.915 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 13.476 8.934 1.201 16.213 hybrid contribution -0.578 -0.593 -0.168 0.844 sum 12.898 8.341 1.034 15.395 Atomic orbital electron populations 1.21489 0.95112 1.01035 1.00716 1.21723 0.95985 0.97421 0.99635 1.21106 0.80896 0.97140 0.98235 1.44039 1.05565 1.61066 1.06178 1.20111 0.99438 1.44720 0.83080 0.86520 1.26173 0.96903 0.95297 1.02540 1.70190 1.13553 1.41408 1.27418 0.84955 0.77815 0.78874 0.76894 1.20516 1.21708 1.17638 1.20933 0.90931 0.81260 0.83243 1.90494 1.71523 1.57252 1.34425 1.21016 0.91107 0.97977 1.00316 1.21735 0.96432 0.94569 1.02375 1.22392 0.92212 0.95946 0.91648 1.48064 1.44008 1.11260 1.30035 1.17760 0.78172 0.85894 0.80759 1.90729 1.61677 1.60812 1.33718 1.21478 1.13414 0.96048 0.95967 1.22946 1.05430 0.93833 1.00014 1.24614 1.03323 1.01066 0.79319 1.83860 1.64590 1.32567 1.25884 1.25210 0.96228 0.82069 1.00061 1.21612 0.93162 0.81378 1.03893 1.21588 0.94940 1.00210 0.97483 0.92582 0.93938 0.92653 0.89878 0.97597 0.96957 0.89364 0.92334 0.87797 0.93704 0.89166 0.86891 0.87207 0.82964 0.73522 0.73654 0.88495 0.90021 0.91489 0.93837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.85 9.91 71.98 0.71 -4.13 16 2 C -0.11 -5.14 5.63 30.60 0.17 -4.97 16 3 C 0.15 7.37 4.47 86.38 0.39 7.75 16 4 N -0.45 -21.95 2.64 -635.52 -1.68 -23.62 16 5 C -0.35 -15.67 8.90 84.04 0.75 -14.92 16 6 H 0.12 4.64 5.83 -2.91 -0.02 4.63 16 7 C -0.01 -0.35 5.26 84.93 0.45 0.10 16 8 N -0.89 -42.28 7.81 21.66 0.17 -42.11 16 9 Si 0.99 35.36 29.55 68.60 2.03 37.38 16 10 H -0.28 -10.00 7.11 99.48 0.71 -9.29 16 11 H -0.29 -10.72 7.11 99.48 0.71 -10.01 16 12 H -0.25 -8.24 7.11 99.48 0.71 -7.53 16 13 C 0.45 21.16 6.67 87.66 0.58 21.74 16 14 O -0.65 -35.42 15.73 -3.07 -0.05 -35.47 16 15 C -0.08 -2.98 1.66 -11.50 -0.02 -3.00 16 16 C -0.11 -3.32 5.24 30.68 0.16 -3.16 16 17 C 0.10 2.07 5.24 86.36 0.45 2.53 16 18 N -0.60 -15.97 2.97 -822.83 -2.45 -18.41 16 19 C 0.58 17.47 7.64 86.65 0.66 18.13 16 20 O -0.59 -22.35 16.50 -4.06 -0.07 -22.42 16 21 C -0.26 -6.19 5.70 -18.99 -0.11 -6.30 16 22 C -0.20 -4.18 11.12 23.65 0.26 -3.91 16 23 C -0.02 -0.24 12.03 66.89 0.80 0.56 16 24 O -0.17 -2.66 10.52 4.45 0.05 -2.61 16 25 C 0.03 0.54 9.72 67.39 0.66 1.20 16 26 C 0.12 3.42 6.44 86.36 0.56 3.98 16 27 C -0.10 -3.58 4.89 30.68 0.15 -3.43 16 28 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.08 4.20 5.95 -2.39 -0.01 4.18 16 32 H 0.01 0.27 7.99 -2.39 -0.02 0.25 16 33 H 0.01 0.62 7.68 -2.39 -0.02 0.60 16 34 H 0.09 4.46 6.12 -2.39 -0.01 4.45 16 35 H 0.27 12.19 8.31 -92.71 -0.77 11.41 16 36 H 0.10 3.52 6.57 -2.39 -0.02 3.50 16 37 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 38 H 0.09 2.61 7.76 -2.39 -0.02 2.60 16 39 H 0.11 1.86 4.31 -2.39 -0.01 1.85 16 40 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16 42 H 0.25 1.05 8.06 -2.91 -0.02 1.03 16 43 H 0.25 2.11 6.51 -2.91 -0.02 2.09 16 44 H 0.10 2.23 8.14 -2.38 -0.02 2.21 16 45 H 0.08 2.50 7.00 -2.39 -0.02 2.48 16 46 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 47 H 0.04 1.74 7.91 -2.39 -0.02 1.72 16 Total: -1.00 -70.44 372.60 5.62 -64.82 By element: Atomic # 1 Polarization: 29.29 SS G_CDS: 0.99 Total: 30.28 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: 6.63 Total: 12.17 kcal Atomic # 7 Polarization: -80.19 SS G_CDS: -3.96 Total: -84.15 kcal Atomic # 8 Polarization: -60.44 SS G_CDS: -0.07 Total: -60.51 kcal Atomic # 14 Polarization: 35.36 SS G_CDS: 2.03 Total: 37.38 kcal Total: -70.44 5.62 -64.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098022342.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.757 kcal (2) G-P(sol) polarization free energy of solvation -70.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds