Wall clock time and date at job start Tue Mar 31 2020 17:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34233 * 116.99946 * 2 1 4 4 O 1.20816 * 120.00359 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99984 * 179.97438 * 3 2 1 6 6 C 1.52994 * 109.47389 * 205.00112 * 5 3 2 7 7 C 1.53001 * 109.46903 * 85.00006 * 5 3 2 8 8 N 1.46903 * 109.47296 * 325.00486 * 5 3 2 9 9 C 1.46894 * 111.00149 * 180.02562 * 8 5 3 10 10 C 1.50707 * 109.46958 * 179.97438 * 9 8 5 11 11 O 1.21282 * 120.00147 * 354.63743 * 10 9 8 12 12 N 1.34772 * 119.99725 * 174.64055 * 10 9 8 13 13 C 1.46503 * 120.00074 * 184.48936 * 12 10 9 14 14 C 1.50699 * 109.47272 * 269.99742 * 13 12 10 15 15 H 1.08003 * 119.99621 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00247 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99762 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00057 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46669 * 60.00754 * 18 16 14 20 20 H 1.48497 * 109.47058 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47152 * 300.00908 * 18 16 14 22 22 C 1.39928 * 120.00496 * 4.48459 * 12 10 9 23 23 C 1.38872 * 120.06597 * 66.94612 * 22 12 10 24 24 C 1.38114 * 119.92929 * 179.97438 * 23 22 12 25 25 C 1.38283 * 120.06883 * 359.97438 * 24 23 22 26 26 C 1.38283 * 120.14159 * 0.03316 * 25 24 23 27 27 C 1.38105 * 120.06938 * 359.96593 * 26 25 24 28 28 H 1.08998 * 109.47046 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47210 * 300.00354 * 1 2 3 30 30 H 1.09001 * 109.46845 * 60.00092 * 1 2 3 31 31 H 1.08998 * 109.47339 * 180.02562 * 6 5 3 32 32 H 1.09003 * 109.46923 * 300.00135 * 6 5 3 33 33 H 1.09003 * 109.46844 * 60.00212 * 6 5 3 34 34 H 1.09003 * 109.47139 * 300.00280 * 7 5 3 35 35 H 1.08993 * 109.47121 * 60.00011 * 7 5 3 36 36 H 1.08998 * 109.47014 * 179.97438 * 7 5 3 37 37 H 1.00902 * 110.99480 * 303.95436 * 8 5 3 38 38 H 1.08998 * 109.47315 * 59.99647 * 9 8 5 39 39 H 1.08998 * 109.46952 * 299.99243 * 9 8 5 40 40 H 1.09004 * 109.46985 * 29.99615 * 13 12 10 41 41 H 1.09003 * 109.47373 * 149.99929 * 13 12 10 42 42 H 0.97001 * 119.99915 * 179.97438 * 17 16 14 43 43 H 1.07997 * 120.03932 * 359.71096 * 23 22 12 44 44 H 1.07998 * 119.96480 * 179.97438 * 24 23 22 45 45 H 1.07999 * 119.92669 * 180.02562 * 25 24 23 46 46 H 1.07996 * 119.96378 * 179.97438 * 26 25 24 47 47 H 1.08005 * 120.03423 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0070 2.6072 0.6101 7 6 4.0828 1.1758 -1.4362 8 7 4.1145 0.1677 0.7953 9 6 5.5825 0.2128 0.8189 10 6 6.1073 -0.9353 1.6421 11 8 5.3356 -1.6568 2.2379 12 7 7.4340 -1.1602 1.7163 13 6 7.9392 -2.3327 2.4348 14 6 8.1745 -1.9737 3.8794 15 1 7.9680 -0.9724 4.2275 16 6 8.6525 -2.9238 4.7569 17 7 8.9035 -4.1432 4.3330 18 14 8.9449 -2.4785 6.5473 19 1 7.6683 -2.0330 7.1614 20 1 9.4568 -3.6670 7.2757 21 1 9.9424 -1.3813 6.6280 22 6 8.3291 -0.2740 1.1068 23 6 8.4613 1.0219 1.5881 24 6 9.3461 1.8942 0.9848 25 6 10.1002 1.4780 -0.0971 26 6 9.9707 0.1883 -0.5788 27 6 9.0878 -0.6887 0.0201 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 5.0955 2.6644 0.6101 32 1 3.6003 3.4287 0.0203 33 1 3.6391 2.6778 1.6337 34 1 3.7688 0.2266 -1.8705 35 1 3.6761 1.9972 -2.0259 36 1 5.1712 1.2333 -1.4359 37 1 3.7377 0.1734 1.7314 38 1 5.9101 1.1546 1.2591 39 1 5.9648 0.1350 -0.1989 40 1 7.2075 -3.1385 2.3753 41 1 8.8765 -2.6591 1.9842 42 1 9.2401 -4.8115 4.9503 43 1 7.8699 1.3487 2.4306 44 1 9.4491 2.9022 1.3583 45 1 10.7916 2.1618 -0.5668 46 1 10.5608 -0.1335 -1.4241 47 1 8.9868 -1.6958 -0.3568 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000102826458.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:49 Heat of formation + Delta-G solvation = -77.551218 kcal Electronic energy + Delta-G solvation = -29552.720667 eV Core-core repulsion = 25508.329971 eV Total energy + Delta-G solvation = -4044.390696 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.87648 -39.94992 -38.33032 -37.33508 -36.39674 -34.83766 -32.73442 -31.38918 -30.71236 -29.41223 -28.22000 -27.88525 -27.47111 -25.98387 -23.63559 -22.73469 -22.34527 -21.88570 -19.82754 -19.10524 -18.17000 -17.25644 -16.63739 -16.52516 -16.38252 -15.97512 -15.54399 -15.44322 -14.80574 -14.71670 -14.42511 -14.22766 -13.93764 -13.85155 -13.32207 -13.20680 -13.07452 -12.90710 -12.83811 -12.39772 -12.36876 -12.24317 -12.09475 -11.93797 -11.67451 -11.48281 -11.47302 -11.21275 -11.03017 -10.87829 -10.87300 -10.64300 -10.45902 -10.19147 -9.76905 -9.34203 -8.77241 -8.67240 -8.46424 -8.44886 -7.68553 -6.07099 -4.11587 1.51933 1.59657 2.00134 2.58018 3.24800 3.31052 3.35089 3.37490 3.49615 3.97045 4.09788 4.42707 4.43328 4.64692 4.75032 4.94205 4.98273 5.05170 5.12750 5.13276 5.26059 5.27830 5.30509 5.32813 5.36948 5.40422 5.46602 5.57012 5.58766 5.64014 5.77363 5.85209 5.95320 5.99087 6.21304 6.25234 6.53273 6.63927 6.68644 6.75859 6.96246 7.15617 7.16961 7.34657 7.45394 7.65318 7.87882 8.16842 8.31506 8.82741 8.96796 9.52811 11.01243 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.010222 B = 0.003781 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2738.478211 B = 7403.947360 C = 9136.961519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.332 6.332 3 C 0.478 3.522 4 O -0.511 6.511 5 C 0.124 3.876 6 C -0.177 4.177 7 C -0.142 4.142 8 N -0.651 5.651 9 C 0.036 3.964 10 C 0.513 3.487 11 O -0.511 6.511 12 N -0.563 5.563 13 C 0.250 3.750 14 C -0.526 4.526 15 H 0.056 0.944 16 C 0.063 3.937 17 N -0.894 5.894 18 Si 0.898 3.102 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.277 1.277 22 C 0.165 3.835 23 C -0.127 4.127 24 C -0.110 4.110 25 C -0.135 4.135 26 C -0.108 4.108 27 C -0.125 4.125 28 H 0.102 0.898 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.358 0.642 38 H 0.065 0.935 39 H 0.102 0.898 40 H 0.047 0.953 41 H 0.035 0.965 42 H 0.264 0.736 43 H 0.121 0.879 44 H 0.120 0.880 45 H 0.118 0.882 46 H 0.121 0.879 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.104 13.151 -13.276 19.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.247 6.247 3 C 0.320 3.680 4 O -0.399 6.399 5 C 0.031 3.969 6 C -0.236 4.236 7 C -0.200 4.200 8 N -0.285 5.285 9 C -0.096 4.096 10 C 0.300 3.700 11 O -0.385 6.385 12 N -0.292 5.292 13 C 0.133 3.867 14 C -0.564 4.564 15 H 0.075 0.925 16 C -0.139 4.139 17 N -0.533 5.533 18 Si 0.726 3.274 19 H -0.202 1.202 20 H -0.211 1.211 21 H -0.202 1.202 22 C 0.073 3.927 23 C -0.147 4.147 24 C -0.128 4.128 25 C -0.153 4.153 26 C -0.127 4.127 27 C -0.145 4.145 28 H 0.121 0.879 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.178 0.822 38 H 0.082 0.918 39 H 0.120 0.880 40 H 0.065 0.935 41 H 0.053 0.947 42 H 0.074 0.926 43 H 0.139 0.861 44 H 0.138 0.862 45 H 0.136 0.864 46 H 0.139 0.861 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -6.772 12.329 -13.366 19.404 hybrid contribution 0.315 0.953 1.769 2.034 sum -6.457 13.281 -11.597 18.777 Atomic orbital electron populations 1.23302 0.76923 1.03843 1.02157 1.86685 1.22634 1.32520 1.82878 1.23542 0.91309 0.81451 0.71727 1.90654 1.66772 1.36640 1.45825 1.20792 0.86792 0.91606 0.97725 1.22479 1.02600 0.96602 1.01872 1.21916 1.02468 1.03453 0.92123 1.60289 1.05513 1.42388 1.20357 1.22039 0.88384 0.97461 1.01737 1.20154 0.82151 0.85932 0.81778 1.90708 1.55426 1.47872 1.44455 1.45970 1.03977 1.26801 1.52420 1.19417 0.95040 0.81484 0.90803 1.21308 1.43972 0.97383 0.93765 0.92527 1.24898 0.95312 0.94764 0.98915 1.69915 1.44883 1.02839 1.35646 0.86559 0.78568 0.77808 0.84513 1.20156 1.21111 1.20246 1.17749 0.93131 0.89788 0.92072 1.21349 0.99913 0.93858 0.99573 1.20962 0.96346 0.99293 0.96244 1.21057 1.00257 0.96299 0.97732 1.20975 0.98163 0.93622 0.99952 1.21332 0.97504 1.00352 0.95261 0.87950 0.92030 0.92162 0.90405 0.90482 0.91804 0.90455 0.91431 0.90357 0.82183 0.91770 0.87989 0.93453 0.94696 0.92597 0.86108 0.86202 0.86415 0.86089 0.85699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 101.05 1.07 1.37 16 2 O -0.33 -4.33 10.27 -39.27 -0.40 -4.73 16 3 C 0.48 6.24 6.74 36.01 0.24 6.49 16 4 O -0.51 -7.41 15.84 -18.74 -0.30 -7.70 16 5 C 0.12 1.44 0.92 -132.75 -0.12 1.32 16 6 C -0.18 -1.81 7.76 37.15 0.29 -1.52 16 7 C -0.14 -1.39 8.22 37.16 0.31 -1.08 16 8 N -0.65 -9.18 5.51 -102.40 -0.56 -9.75 16 9 C 0.04 0.51 4.05 -4.98 -0.02 0.49 16 10 C 0.51 10.28 7.59 -10.98 -0.08 10.20 16 11 O -0.51 -12.38 15.78 5.56 0.09 -12.29 16 12 N -0.56 -11.68 2.51 -114.73 -0.29 -11.97 16 13 C 0.25 6.44 5.07 -5.19 -0.03 6.41 16 14 C -0.53 -14.75 9.39 -34.44 -0.32 -15.07 16 15 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 16 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 17 N -0.89 -26.35 13.29 55.43 0.74 -25.62 16 18 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 C 0.16 2.83 4.42 -83.69 -0.37 2.46 16 23 C -0.13 -1.91 8.46 -39.39 -0.33 -2.25 16 24 C -0.11 -1.35 10.04 -39.61 -0.40 -1.74 16 25 C -0.14 -1.54 10.04 -39.55 -0.40 -1.94 16 26 C -0.11 -1.34 10.04 -39.61 -0.40 -1.73 16 27 C -0.12 -1.89 9.65 -39.40 -0.38 -2.27 16 28 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 30 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 31 H 0.08 0.71 6.40 -51.93 -0.33 0.38 16 32 H 0.08 0.76 7.87 -51.93 -0.41 0.35 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.69 6.41 -51.93 -0.33 0.36 16 37 H 0.36 5.41 8.34 -39.29 -0.33 5.09 16 38 H 0.06 0.82 5.16 -51.93 -0.27 0.56 16 39 H 0.10 1.32 6.19 -51.93 -0.32 1.00 16 40 H 0.05 1.36 7.49 -51.93 -0.39 0.97 16 41 H 0.04 0.92 7.83 -51.93 -0.41 0.51 16 42 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 43 H 0.12 1.82 7.91 -52.49 -0.42 1.41 16 44 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 45 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 46 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 47 H 0.13 1.88 8.06 -52.48 -0.42 1.45 16 LS Contribution 393.24 15.07 5.93 5.93 Total: -1.00 -33.80 393.24 -7.84 -41.64 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -6.97 Total: 4.87 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: -1.05 Total: 2.82 kcal Atomic # 7 Polarization: -47.21 SS G_CDS: -0.12 Total: -47.33 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -0.61 Total: -24.73 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.80 -7.84 -41.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000102826458.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.912 kcal (2) G-P(sol) polarization free energy of solvation -33.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds