Wall clock time and date at job start Tue Mar 31 2020 17:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34233 * 116.99946 * 2 1 4 4 O 1.20816 * 120.00359 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99984 * 179.97438 * 3 2 1 6 6 C 1.52994 * 109.47389 * 205.00112 * 5 3 2 7 7 C 1.53001 * 109.46903 * 85.00006 * 5 3 2 8 8 N 1.46903 * 109.47296 * 325.00486 * 5 3 2 9 9 C 1.46894 * 111.00149 * 180.02562 * 8 5 3 10 10 C 1.50707 * 109.46958 * 179.97438 * 9 8 5 11 11 O 1.21282 * 120.00147 * 354.63743 * 10 9 8 12 12 N 1.34772 * 119.99725 * 174.64055 * 10 9 8 13 13 C 1.46503 * 120.00074 * 184.48936 * 12 10 9 14 14 C 1.50699 * 109.47272 * 269.99742 * 13 12 10 15 15 H 1.08003 * 119.99621 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00247 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99762 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00057 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46669 * 60.00754 * 18 16 14 20 20 H 1.48497 * 109.47058 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47152 * 300.00908 * 18 16 14 22 22 C 1.39928 * 120.00496 * 4.48459 * 12 10 9 23 23 C 1.38872 * 120.06597 * 66.94612 * 22 12 10 24 24 C 1.38114 * 119.92929 * 179.97438 * 23 22 12 25 25 C 1.38283 * 120.06883 * 359.97438 * 24 23 22 26 26 C 1.38283 * 120.14159 * 0.03316 * 25 24 23 27 27 C 1.38105 * 120.06938 * 359.96593 * 26 25 24 28 28 H 1.08998 * 109.47046 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47210 * 300.00354 * 1 2 3 30 30 H 1.09001 * 109.46845 * 60.00092 * 1 2 3 31 31 H 1.08998 * 109.47339 * 180.02562 * 6 5 3 32 32 H 1.09003 * 109.46923 * 300.00135 * 6 5 3 33 33 H 1.09003 * 109.46844 * 60.00212 * 6 5 3 34 34 H 1.09003 * 109.47139 * 300.00280 * 7 5 3 35 35 H 1.08993 * 109.47121 * 60.00011 * 7 5 3 36 36 H 1.08998 * 109.47014 * 179.97438 * 7 5 3 37 37 H 1.00902 * 110.99480 * 303.95436 * 8 5 3 38 38 H 1.08998 * 109.47315 * 59.99647 * 9 8 5 39 39 H 1.08998 * 109.46952 * 299.99243 * 9 8 5 40 40 H 1.09004 * 109.46985 * 29.99615 * 13 12 10 41 41 H 1.09003 * 109.47373 * 149.99929 * 13 12 10 42 42 H 0.97001 * 119.99915 * 179.97438 * 17 16 14 43 43 H 1.07997 * 120.03932 * 359.71096 * 23 22 12 44 44 H 1.07998 * 119.96480 * 179.97438 * 24 23 22 45 45 H 1.07999 * 119.92669 * 180.02562 * 25 24 23 46 46 H 1.07996 * 119.96378 * 179.97438 * 26 25 24 47 47 H 1.08005 * 120.03423 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0070 2.6072 0.6101 7 6 4.0828 1.1758 -1.4362 8 7 4.1145 0.1677 0.7953 9 6 5.5825 0.2128 0.8189 10 6 6.1073 -0.9353 1.6421 11 8 5.3356 -1.6568 2.2379 12 7 7.4340 -1.1602 1.7163 13 6 7.9392 -2.3327 2.4348 14 6 8.1745 -1.9737 3.8794 15 1 7.9680 -0.9724 4.2275 16 6 8.6525 -2.9238 4.7569 17 7 8.9035 -4.1432 4.3330 18 14 8.9449 -2.4785 6.5473 19 1 7.6683 -2.0330 7.1614 20 1 9.4568 -3.6670 7.2757 21 1 9.9424 -1.3813 6.6280 22 6 8.3291 -0.2740 1.1068 23 6 8.4613 1.0219 1.5881 24 6 9.3461 1.8942 0.9848 25 6 10.1002 1.4780 -0.0971 26 6 9.9707 0.1883 -0.5788 27 6 9.0878 -0.6887 0.0201 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 5.0955 2.6644 0.6101 32 1 3.6003 3.4287 0.0203 33 1 3.6391 2.6778 1.6337 34 1 3.7688 0.2266 -1.8705 35 1 3.6761 1.9972 -2.0259 36 1 5.1712 1.2333 -1.4359 37 1 3.7377 0.1734 1.7314 38 1 5.9101 1.1546 1.2591 39 1 5.9648 0.1350 -0.1989 40 1 7.2075 -3.1385 2.3753 41 1 8.8765 -2.6591 1.9842 42 1 9.2401 -4.8115 4.9503 43 1 7.8699 1.3487 2.4306 44 1 9.4491 2.9022 1.3583 45 1 10.7916 2.1618 -0.5668 46 1 10.5608 -0.1335 -1.4241 47 1 8.9868 -1.6958 -0.3568 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000102826458.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:48 Heat of formation + Delta-G solvation = -99.197340 kcal Electronic energy + Delta-G solvation = -29553.659313 eV Core-core repulsion = 25508.329971 eV Total energy + Delta-G solvation = -4045.329343 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.90475 -41.31989 -39.53775 -38.43437 -37.44571 -36.44087 -34.77997 -32.54329 -31.75650 -30.81724 -29.43994 -28.96815 -28.41144 -27.38240 -25.09414 -24.14117 -23.43633 -23.18177 -20.81527 -20.43474 -19.29554 -18.70347 -18.33672 -17.61312 -17.52177 -17.29215 -16.98012 -16.74231 -16.28281 -15.88400 -15.71557 -15.38821 -14.98863 -14.90311 -14.54155 -14.37552 -14.26942 -14.21271 -13.95195 -13.74382 -13.54685 -13.35744 -13.22856 -13.04793 -12.93671 -12.80149 -12.65412 -12.63920 -12.42748 -12.34807 -12.11625 -12.07233 -11.79588 -11.72602 -11.45369 -10.90545 -10.65691 -10.06756 -9.81023 -9.61684 -9.16085 -8.23519 -6.38113 0.41109 0.55386 0.99199 1.34976 1.39090 1.46234 1.69981 1.72381 2.08158 2.38373 2.87654 2.96200 3.06456 3.52542 3.59092 3.83016 3.88993 4.08976 4.17979 4.22319 4.25583 4.29673 4.30400 4.37306 4.55811 4.60405 4.65194 4.65937 4.69895 4.73523 4.77220 4.81477 5.03038 5.04795 5.12922 5.17577 5.20630 5.31504 5.44698 5.58306 5.63250 5.68217 5.70064 5.81524 6.00025 6.02320 6.12787 6.66734 6.67292 6.76419 7.25177 7.40294 8.83421 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.010222 B = 0.003781 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2738.478211 B = 7403.947360 C = 9136.961519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.351 6.351 3 C 0.476 3.524 4 O -0.529 6.529 5 C 0.124 3.876 6 C -0.172 4.172 7 C -0.140 4.140 8 N -0.665 5.665 9 C 0.059 3.941 10 C 0.504 3.496 11 O -0.567 6.567 12 N -0.564 5.564 13 C 0.268 3.732 14 C -0.540 4.540 15 H 0.052 0.948 16 C 0.010 3.990 17 N -0.927 5.927 18 Si 0.965 3.035 19 H -0.277 1.277 20 H -0.277 1.277 21 H -0.262 1.262 22 C 0.126 3.874 23 C -0.136 4.136 24 C -0.101 4.101 25 C -0.120 4.120 26 C -0.102 4.102 27 C -0.140 4.140 28 H 0.123 0.877 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.054 0.946 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.348 0.652 38 H 0.087 0.913 39 H 0.122 0.878 40 H 0.003 0.997 41 H 0.021 0.979 42 H 0.268 0.732 43 H 0.114 0.886 44 H 0.153 0.847 45 H 0.158 0.842 46 H 0.150 0.850 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.489 16.295 -14.306 22.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.265 6.265 3 C 0.320 3.680 4 O -0.418 6.418 5 C 0.032 3.968 6 C -0.231 4.231 7 C -0.198 4.198 8 N -0.298 5.298 9 C -0.072 4.072 10 C 0.293 3.707 11 O -0.446 6.446 12 N -0.292 5.292 13 C 0.148 3.852 14 C -0.579 4.579 15 H 0.070 0.930 16 C -0.189 4.189 17 N -0.567 5.567 18 Si 0.790 3.210 19 H -0.202 1.202 20 H -0.202 1.202 21 H -0.186 1.186 22 C 0.036 3.964 23 C -0.156 4.156 24 C -0.120 4.120 25 C -0.137 4.137 26 C -0.121 4.121 27 C -0.160 4.160 28 H 0.141 0.859 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.111 0.889 32 H 0.103 0.897 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.102 0.898 36 H 0.110 0.890 37 H 0.168 0.832 38 H 0.104 0.896 39 H 0.140 0.860 40 H 0.021 0.979 41 H 0.039 0.961 42 H 0.077 0.923 43 H 0.132 0.868 44 H 0.170 0.830 45 H 0.175 0.825 46 H 0.168 0.832 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -5.136 15.513 -14.442 21.808 hybrid contribution -0.171 -0.015 1.993 2.000 sum -5.307 15.498 -12.450 20.575 Atomic orbital electron populations 1.23559 0.75259 1.05447 1.02589 1.86671 1.24506 1.32710 1.82662 1.23820 0.91886 0.81211 0.71125 1.90636 1.67264 1.37048 1.46846 1.20946 0.85931 0.91418 0.98510 1.22459 1.03500 0.95788 1.01343 1.21950 1.03286 1.03744 0.90780 1.60250 1.05232 1.44268 1.20094 1.21866 0.88489 0.95382 1.01485 1.21186 0.81484 0.86643 0.81382 1.90666 1.56684 1.50236 1.46965 1.45769 1.05141 1.26086 1.52188 1.18795 0.92956 0.82665 0.90800 1.21577 1.43982 0.97264 0.95035 0.92987 1.25811 0.94908 0.94599 1.03550 1.70037 1.45522 1.03832 1.37282 0.85502 0.78590 0.78136 0.78816 1.20205 1.20200 1.18642 1.17999 0.94410 0.90299 0.93727 1.21374 1.00987 0.93382 0.99851 1.21327 0.94734 1.00092 0.95813 1.21540 0.99451 0.96169 0.96585 1.21317 0.96993 0.93576 1.00182 1.21384 0.98423 1.00644 0.95499 0.85880 0.92066 0.91255 0.88879 0.89685 0.92665 0.91273 0.89755 0.89033 0.83248 0.89576 0.86049 0.97939 0.96118 0.92349 0.86823 0.82959 0.82461 0.83182 0.86962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 10.56 113.37 1.20 1.66 16 2 O -0.35 -9.18 10.27 -51.44 -0.53 -9.70 16 3 C 0.48 12.30 6.74 71.24 0.48 12.78 16 4 O -0.53 -15.02 15.84 21.99 0.35 -14.68 16 5 C 0.12 2.77 0.92 2.78 0.00 2.77 16 6 C -0.17 -3.22 7.76 71.98 0.56 -2.66 16 7 C -0.14 -2.47 8.22 71.98 0.59 -1.88 16 8 N -0.66 -18.90 5.51 -477.88 -2.63 -21.53 16 9 C 0.06 1.69 4.05 85.56 0.35 2.03 16 10 C 0.50 21.17 7.59 87.66 0.67 21.83 16 11 O -0.57 -29.45 15.78 -3.03 -0.05 -29.50 16 12 N -0.56 -24.56 2.51 -635.29 -1.59 -26.15 16 13 C 0.27 14.72 5.07 85.63 0.43 15.15 16 14 C -0.54 -31.53 9.39 25.60 0.24 -31.29 16 15 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 16 C 0.01 0.61 5.46 84.65 0.46 1.07 16 17 N -0.93 -56.50 13.29 21.45 0.28 -56.22 16 18 Si 0.97 45.31 29.54 68.60 2.03 47.33 16 19 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 20 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 21 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 22 C 0.13 4.33 4.42 38.15 0.17 4.50 16 23 C -0.14 -3.87 8.46 22.39 0.19 -3.68 16 24 C -0.10 -2.06 10.04 22.25 0.22 -1.84 16 25 C -0.12 -2.13 10.04 22.29 0.22 -1.91 16 26 C -0.10 -2.18 10.04 22.25 0.22 -1.95 16 27 C -0.14 -4.15 9.65 22.39 0.22 -3.94 16 28 H 0.12 1.71 8.14 -2.39 -0.02 1.70 16 29 H 0.06 1.13 8.13 -2.39 -0.02 1.11 16 30 H 0.07 1.15 8.13 -2.39 -0.02 1.13 16 31 H 0.09 1.43 6.40 -2.39 -0.02 1.42 16 32 H 0.08 1.48 7.87 -2.39 -0.02 1.46 16 33 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.08 1.21 8.14 -2.39 -0.02 1.20 16 36 H 0.09 1.36 6.41 -2.39 -0.02 1.35 16 37 H 0.35 10.97 8.34 -89.69 -0.75 10.23 16 38 H 0.09 2.09 5.16 -2.39 -0.01 2.08 16 39 H 0.12 3.00 6.19 -2.39 -0.01 2.99 16 40 H 0.00 0.16 7.49 -2.38 -0.02 0.14 16 41 H 0.02 1.17 7.83 -2.39 -0.02 1.16 16 42 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 43 H 0.11 3.32 7.91 -2.91 -0.02 3.30 16 44 H 0.15 2.14 8.06 -2.91 -0.02 2.11 16 45 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 46 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 47 H 0.11 3.50 8.06 -2.91 -0.02 3.48 16 Total: -1.00 -78.30 393.24 4.31 -73.99 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: 0.23 Total: 23.81 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: 6.22 Total: 12.65 kcal Atomic # 7 Polarization: -99.95 SS G_CDS: -3.94 Total: -103.90 kcal Atomic # 8 Polarization: -53.65 SS G_CDS: -0.23 Total: -53.88 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.33 kcal Total: -78.30 4.31 -73.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000102826458.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.210 kcal (2) G-P(sol) polarization free energy of solvation -78.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds