Wall clock time and date at job start Tue Mar 31 2020 17:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46910 * 2 1 4 4 H 1.08997 * 109.47553 * 55.55671 * 3 2 1 5 5 C 1.53003 * 109.47585 * 295.55262 * 3 2 1 6 6 C 1.53004 * 109.46872 * 175.55401 * 3 2 1 7 7 H 1.08995 * 109.47167 * 304.07714 * 6 3 2 8 8 N 1.46501 * 109.47001 * 184.08215 * 6 3 2 9 9 C 1.34778 * 120.00067 * 155.00097 * 8 6 3 10 10 O 1.21282 * 119.99942 * 359.97438 * 9 8 6 11 11 C 1.50695 * 120.00224 * 180.02562 * 9 8 6 12 12 C 1.50700 * 109.47231 * 180.02562 * 11 9 8 13 13 C 1.38309 * 119.92490 * 269.72216 * 12 11 9 14 14 C 1.38102 * 120.06195 * 179.72801 * 13 12 11 15 15 C 1.38876 * 119.93092 * 0.56575 * 14 13 12 16 16 O 1.35760 * 120.06720 * 179.68621 * 15 14 13 17 17 C 1.34826 * 116.99825 * 185.33868 * 16 15 14 18 18 H 1.08003 * 120.00257 * 5.17631 * 17 16 15 19 19 C 1.38657 * 119.99922 * 185.17787 * 17 16 15 20 20 N 1.31563 * 119.99838 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00246 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47372 * 89.99563 * 21 19 17 23 23 H 1.48496 * 109.47153 * 210.00203 * 21 19 17 24 24 H 1.48507 * 109.47003 * 330.00028 * 21 19 17 25 25 C 1.38874 * 119.86766 * 359.71093 * 15 14 13 26 26 C 1.38099 * 119.92610 * 359.97438 * 25 15 14 27 27 C 1.50702 * 109.47257 * 64.08071 * 6 3 2 28 28 N 1.34770 * 119.99840 * 280.17725 * 27 6 3 29 29 O 1.21277 * 119.99849 * 100.18134 * 27 6 3 30 30 H 1.09006 * 109.46820 * 59.99619 * 1 2 3 31 31 H 1.08993 * 109.47035 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47143 * 300.00115 * 1 2 3 33 33 H 1.08999 * 109.47127 * 240.00609 * 2 1 3 34 34 H 1.08994 * 109.47143 * 120.00279 * 2 1 3 35 35 H 1.08995 * 109.46761 * 59.99744 * 5 3 2 36 36 H 1.08993 * 109.46883 * 180.02562 * 5 3 2 37 37 H 1.09003 * 109.46725 * 300.00410 * 5 3 2 38 38 H 0.96996 * 120.00036 * 334.99765 * 8 6 3 39 39 H 1.09004 * 109.46931 * 299.99519 * 11 9 8 40 40 H 1.08994 * 109.47372 * 59.99405 * 11 9 8 41 41 H 1.07998 * 119.96806 * 359.97438 * 13 12 11 42 42 H 1.08003 * 120.03382 * 180.27686 * 14 13 12 43 43 H 0.96994 * 119.99784 * 180.02562 * 20 19 17 44 44 H 1.08000 * 120.04161 * 179.97438 * 25 15 14 45 45 H 1.08009 * 119.96353 * 180.02562 * 26 25 15 46 46 H 0.96999 * 120.00058 * 354.96006 * 28 27 6 47 47 H 0.97006 * 120.00055 * 174.94849 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6131 1.9789 0.8474 5 6 1.6234 2.1309 -1.3014 6 6 3.5659 1.4440 0.1118 7 1 3.8655 0.8907 1.0019 8 7 4.0471 2.8242 0.2099 9 6 5.2286 3.0855 0.8035 10 8 5.8933 2.1779 1.2568 11 6 5.7232 4.5053 0.9049 12 6 7.0574 4.5236 1.6055 13 6 7.1126 4.6560 2.9811 14 6 8.3335 4.6675 3.6265 15 6 9.5068 4.5577 2.8917 16 8 10.7087 4.5751 3.5228 17 6 11.8091 4.5761 2.7437 18 1 11.7109 4.6478 1.6705 19 6 13.0668 4.4850 3.3203 20 7 13.1864 4.3970 4.6275 21 14 14.5915 4.4871 2.2410 22 1 15.0561 5.8835 2.0433 23 1 15.6637 3.6968 2.8975 24 1 14.2666 3.8824 0.9241 25 6 9.4482 4.4307 1.5101 26 6 8.2241 4.4133 0.8711 27 6 4.1598 0.7906 -1.1095 28 7 4.1982 -0.5533 -1.2033 29 8 4.6031 1.4741 -2.0078 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8934 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 0.5364 2.1298 -1.3811 36 1 1.9871 3.1583 -1.3015 37 1 2.0503 1.5945 -2.1489 38 1 3.5153 3.5501 -0.1523 39 1 5.8328 4.9242 -0.0954 40 1 5.0068 5.1001 1.4714 41 1 6.2000 4.7465 3.5514 42 1 8.3759 4.7664 4.7012 43 1 14.0662 4.3337 5.0308 44 1 10.3590 4.3456 0.9358 45 1 8.1778 4.3142 -0.2034 46 1 3.9113 -1.1001 -0.4552 47 1 4.5125 -0.9738 -2.0190 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110172234.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:54 Heat of formation + Delta-G solvation = -91.937799 kcal Electronic energy + Delta-G solvation = -28349.028655 eV Core-core repulsion = 24304.014109 eV Total energy + Delta-G solvation = -4045.014545 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.79627 -39.28792 -38.54422 -37.01137 -36.37338 -34.21196 -33.64996 -32.41467 -31.43159 -30.15580 -30.04789 -27.90599 -26.33036 -25.05363 -24.24891 -22.05763 -21.87923 -20.93176 -20.10974 -19.96891 -17.91241 -17.80910 -17.28628 -16.92013 -16.77181 -16.05713 -15.62586 -15.13240 -15.00646 -14.56877 -14.42220 -14.24353 -14.09814 -13.81801 -13.68457 -13.49117 -13.37936 -13.32666 -12.62474 -12.60518 -12.47902 -12.37509 -12.05883 -11.79249 -11.47701 -11.44682 -11.27234 -11.20177 -11.09650 -10.78676 -10.69666 -10.52597 -10.37959 -10.36669 -9.85497 -9.72331 -9.27790 -9.14097 -8.75685 -8.06593 -7.08773 -6.38784 -3.96942 2.30307 2.33735 2.41543 2.72175 3.03358 3.17720 3.18435 3.23132 3.45530 4.02513 4.18335 4.33087 4.36583 4.61344 4.66827 4.78570 4.93408 5.04822 5.06592 5.13807 5.17150 5.22797 5.32746 5.40295 5.42361 5.44618 5.50204 5.55954 5.57371 5.74427 5.81419 5.83586 5.87819 5.93130 6.21354 6.30169 6.50523 6.54382 6.78450 6.99692 7.06252 7.13239 7.31104 7.43511 7.46112 7.52735 7.92209 8.03748 8.06845 8.32269 9.07146 9.78445 10.79497 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.022216 B = 0.002163 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.043755 B =12944.164056 C =13396.836894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.129 4.129 3 C -0.092 4.092 4 H 0.092 0.908 5 C -0.154 4.154 6 C 0.131 3.869 7 H 0.109 0.891 8 N -0.718 5.718 9 C 0.514 3.486 10 O -0.520 6.520 11 C -0.078 4.078 12 C -0.169 4.169 13 C -0.060 4.060 14 C -0.192 4.192 15 C 0.156 3.844 16 O -0.179 6.179 17 C -0.389 4.389 18 H 0.091 0.909 19 C 0.038 3.962 20 N -0.864 5.864 21 Si 0.941 3.059 22 H -0.273 1.273 23 H -0.278 1.278 24 H -0.268 1.268 25 C -0.232 4.232 26 C -0.056 4.056 27 C 0.513 3.487 28 N -0.855 5.855 29 O -0.533 6.533 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.403 0.597 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.108 0.892 42 H 0.116 0.884 43 H 0.269 0.731 44 H 0.126 0.874 45 H 0.104 0.896 46 H 0.401 0.599 47 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.777 -7.000 -10.456 29.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.167 4.167 3 C -0.112 4.112 4 H 0.110 0.890 5 C -0.211 4.211 6 C 0.021 3.979 7 H 0.127 0.873 8 N -0.373 5.373 9 C 0.302 3.698 10 O -0.394 6.394 11 C -0.118 4.118 12 C -0.170 4.170 13 C -0.078 4.078 14 C -0.211 4.211 15 C 0.103 3.897 16 O -0.082 6.082 17 C -0.466 4.466 18 H 0.109 0.891 19 C -0.166 4.166 20 N -0.499 5.499 21 Si 0.765 3.235 22 H -0.199 1.199 23 H -0.203 1.203 24 H -0.192 1.192 25 C -0.251 4.251 26 C -0.074 4.074 27 C 0.296 3.704 28 N -0.420 5.420 29 O -0.408 6.408 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.238 0.762 39 H 0.112 0.888 40 H 0.111 0.889 41 H 0.126 0.874 42 H 0.134 0.866 43 H 0.079 0.921 44 H 0.144 0.856 45 H 0.122 0.878 46 H 0.230 0.770 47 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -25.751 -7.049 -10.172 28.571 hybrid contribution 0.581 -0.305 -0.807 1.040 sum -25.170 -7.355 -10.979 28.428 Atomic orbital electron populations 1.21784 0.95002 1.01934 1.02170 1.21735 0.96902 0.95270 1.02831 1.21387 0.91415 0.98062 1.00301 0.88980 1.21959 1.01772 1.00806 0.96605 1.20868 0.94283 0.85512 0.97194 0.87326 1.45798 1.22820 1.07076 1.61565 1.21136 0.79743 0.92495 0.76469 1.90736 1.55047 1.47276 1.46304 1.20388 0.96558 0.92490 1.02372 1.18627 0.92299 1.12565 0.93556 1.20391 0.96115 0.98112 0.93175 1.20137 0.90271 1.11380 0.99360 1.19394 0.87196 0.92138 0.91012 1.83988 1.10437 1.79037 1.34763 1.21320 0.82171 1.52176 0.90917 0.89135 1.25285 0.98295 0.96625 0.96406 1.70044 1.24489 1.46124 1.09256 0.85717 0.79977 0.78581 0.79189 1.19907 1.20299 1.19226 1.21110 0.98041 1.11323 0.94626 1.20539 0.91852 0.96860 0.98160 1.21088 0.77838 0.82605 0.88860 1.43977 1.69855 1.07313 1.20853 1.90737 1.46079 1.63106 1.40892 0.92333 0.92492 0.92484 0.91021 0.91239 0.91626 0.92221 0.92147 0.76177 0.88802 0.88851 0.87371 0.86569 0.92105 0.85613 0.87813 0.77034 0.76924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.59 9.66 37.16 0.36 -0.24 16 2 C -0.13 -0.58 4.49 -26.73 -0.12 -0.70 16 3 C -0.09 -0.54 2.34 -90.62 -0.21 -0.76 16 4 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 5 C -0.15 -0.95 8.47 37.16 0.31 -0.63 16 6 C 0.13 1.22 2.17 -69.08 -0.15 1.07 16 7 H 0.11 1.08 7.58 -51.93 -0.39 0.68 16 8 N -0.72 -7.60 4.58 -54.93 -0.25 -7.85 16 9 C 0.51 7.51 7.78 -10.99 -0.09 7.42 16 10 O -0.52 -9.99 15.70 5.56 0.09 -9.90 16 11 C -0.08 -1.05 5.83 -29.04 -0.17 -1.22 16 12 C -0.17 -3.09 4.38 -104.57 -0.46 -3.55 16 13 C -0.06 -1.13 9.69 -39.61 -0.38 -1.52 16 14 C -0.19 -4.31 9.99 -39.39 -0.39 -4.70 16 15 C 0.16 4.00 6.65 -39.11 -0.26 3.74 16 16 O -0.18 -5.31 9.76 0.03 0.00 -5.31 16 17 C -0.39 -11.30 9.45 30.89 0.29 -11.01 16 18 H 0.09 2.45 5.28 -52.48 -0.28 2.17 16 19 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 20 N -0.86 -26.02 13.67 55.48 0.76 -25.26 16 21 Si 0.94 21.24 29.55 -169.99 -5.02 16.22 16 22 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 23 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 24 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 25 C -0.23 -5.43 9.14 -39.40 -0.36 -5.79 16 26 C -0.06 -1.13 9.69 -39.61 -0.38 -1.51 16 27 C 0.51 5.72 5.57 -10.99 -0.06 5.66 16 28 N -0.86 -6.35 7.57 31.22 0.24 -6.11 16 29 O -0.53 -8.16 17.10 5.56 0.10 -8.07 16 30 H 0.06 0.23 6.55 -51.93 -0.34 -0.11 16 31 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 33 H 0.07 0.32 6.34 -51.93 -0.33 0.00 16 34 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 35 H 0.06 0.31 6.55 -51.93 -0.34 -0.03 16 36 H 0.06 0.36 6.72 -51.93 -0.35 0.02 16 37 H 0.06 0.48 6.91 -51.93 -0.36 0.12 16 38 H 0.40 3.19 7.12 -40.82 -0.29 2.90 16 39 H 0.09 1.10 8.08 -51.93 -0.42 0.68 16 40 H 0.09 0.96 8.08 -51.93 -0.42 0.54 16 41 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 42 H 0.12 2.49 8.06 -52.48 -0.42 2.07 16 43 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 44 H 0.13 2.95 5.70 -52.49 -0.30 2.65 16 45 H 0.10 1.88 8.06 -52.48 -0.42 1.45 16 46 H 0.40 1.90 7.96 -40.82 -0.32 1.57 16 47 H 0.40 2.63 8.93 -40.82 -0.36 2.26 16 LS Contribution 386.88 15.07 5.83 5.83 Total: -1.00 -38.15 386.88 -7.03 -45.19 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -6.60 Total: 8.04 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: -2.17 Total: -12.76 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 0.74 Total: -39.23 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: 0.18 Total: -23.29 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -38.15 -7.03 -45.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110172234.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.749 kcal (2) G-P(sol) polarization free energy of solvation -38.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds