Wall clock time and date at job start Tue Mar 31 2020 17:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46910 * 2 1 4 4 H 1.08997 * 109.47553 * 55.55671 * 3 2 1 5 5 C 1.53003 * 109.47585 * 295.55262 * 3 2 1 6 6 C 1.53004 * 109.46872 * 175.55401 * 3 2 1 7 7 H 1.08995 * 109.47167 * 304.07714 * 6 3 2 8 8 N 1.46501 * 109.47001 * 184.08215 * 6 3 2 9 9 C 1.34778 * 120.00067 * 155.00097 * 8 6 3 10 10 O 1.21282 * 119.99942 * 359.97438 * 9 8 6 11 11 C 1.50695 * 120.00224 * 180.02562 * 9 8 6 12 12 C 1.50700 * 109.47231 * 180.02562 * 11 9 8 13 13 C 1.38309 * 119.92490 * 269.72216 * 12 11 9 14 14 C 1.38102 * 120.06195 * 179.72801 * 13 12 11 15 15 C 1.38876 * 119.93092 * 0.56575 * 14 13 12 16 16 O 1.35760 * 120.06720 * 179.68621 * 15 14 13 17 17 C 1.34826 * 116.99825 * 185.33868 * 16 15 14 18 18 H 1.08003 * 120.00257 * 5.17631 * 17 16 15 19 19 C 1.38657 * 119.99922 * 185.17787 * 17 16 15 20 20 N 1.31563 * 119.99838 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00246 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47372 * 89.99563 * 21 19 17 23 23 H 1.48496 * 109.47153 * 210.00203 * 21 19 17 24 24 H 1.48507 * 109.47003 * 330.00028 * 21 19 17 25 25 C 1.38874 * 119.86766 * 359.71093 * 15 14 13 26 26 C 1.38099 * 119.92610 * 359.97438 * 25 15 14 27 27 C 1.50702 * 109.47257 * 64.08071 * 6 3 2 28 28 N 1.34770 * 119.99840 * 280.17725 * 27 6 3 29 29 O 1.21277 * 119.99849 * 100.18134 * 27 6 3 30 30 H 1.09006 * 109.46820 * 59.99619 * 1 2 3 31 31 H 1.08993 * 109.47035 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47143 * 300.00115 * 1 2 3 33 33 H 1.08999 * 109.47127 * 240.00609 * 2 1 3 34 34 H 1.08994 * 109.47143 * 120.00279 * 2 1 3 35 35 H 1.08995 * 109.46761 * 59.99744 * 5 3 2 36 36 H 1.08993 * 109.46883 * 180.02562 * 5 3 2 37 37 H 1.09003 * 109.46725 * 300.00410 * 5 3 2 38 38 H 0.96996 * 120.00036 * 334.99765 * 8 6 3 39 39 H 1.09004 * 109.46931 * 299.99519 * 11 9 8 40 40 H 1.08994 * 109.47372 * 59.99405 * 11 9 8 41 41 H 1.07998 * 119.96806 * 359.97438 * 13 12 11 42 42 H 1.08003 * 120.03382 * 180.27686 * 14 13 12 43 43 H 0.96994 * 119.99784 * 180.02562 * 20 19 17 44 44 H 1.08000 * 120.04161 * 179.97438 * 25 15 14 45 45 H 1.08009 * 119.96353 * 180.02562 * 26 25 15 46 46 H 0.96999 * 120.00058 * 354.96006 * 28 27 6 47 47 H 0.97006 * 120.00055 * 174.94849 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6131 1.9789 0.8474 5 6 1.6234 2.1309 -1.3014 6 6 3.5659 1.4440 0.1118 7 1 3.8655 0.8907 1.0019 8 7 4.0471 2.8242 0.2099 9 6 5.2286 3.0855 0.8035 10 8 5.8933 2.1779 1.2568 11 6 5.7232 4.5053 0.9049 12 6 7.0574 4.5236 1.6055 13 6 7.1126 4.6560 2.9811 14 6 8.3335 4.6675 3.6265 15 6 9.5068 4.5577 2.8917 16 8 10.7087 4.5751 3.5228 17 6 11.8091 4.5761 2.7437 18 1 11.7109 4.6478 1.6705 19 6 13.0668 4.4850 3.3203 20 7 13.1864 4.3970 4.6275 21 14 14.5915 4.4871 2.2410 22 1 15.0561 5.8835 2.0433 23 1 15.6637 3.6968 2.8975 24 1 14.2666 3.8824 0.9241 25 6 9.4482 4.4307 1.5101 26 6 8.2241 4.4133 0.8711 27 6 4.1598 0.7906 -1.1095 28 7 4.1982 -0.5533 -1.2033 29 8 4.6031 1.4741 -2.0078 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8934 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 0.5364 2.1298 -1.3811 36 1 1.9871 3.1583 -1.3015 37 1 2.0503 1.5945 -2.1489 38 1 3.5153 3.5501 -0.1523 39 1 5.8328 4.9242 -0.0954 40 1 5.0068 5.1001 1.4714 41 1 6.2000 4.7465 3.5514 42 1 8.3759 4.7664 4.7012 43 1 14.0662 4.3337 5.0308 44 1 10.3590 4.3456 0.9358 45 1 8.1778 4.3142 -0.2034 46 1 3.9113 -1.1001 -0.4552 47 1 4.5125 -0.9738 -2.0190 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110172234.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:54 Heat of formation + Delta-G solvation = -121.234790 kcal Electronic energy + Delta-G solvation = -28350.299068 eV Core-core repulsion = 24304.014109 eV Total energy + Delta-G solvation = -4046.284958 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.69248 -40.82417 -39.93188 -38.22483 -37.58789 -35.09209 -34.42665 -34.39685 -32.89334 -31.78350 -30.77649 -28.81505 -27.78423 -26.81795 -24.82338 -23.63601 -23.04005 -22.11001 -21.18874 -20.74428 -19.84812 -18.90673 -18.55910 -18.19114 -17.66731 -16.93371 -16.57100 -16.45751 -16.26399 -15.80291 -15.76890 -15.61137 -15.48024 -15.08887 -14.73497 -14.68864 -14.61144 -14.37153 -14.10058 -14.03042 -13.60504 -13.01751 -12.97854 -12.84589 -12.78459 -12.54199 -12.50178 -12.31710 -12.23708 -12.13662 -11.94837 -11.73407 -11.50048 -11.27620 -11.21400 -10.95994 -10.75840 -10.60276 -10.07979 -9.76754 -8.90665 -8.48240 -6.16058 0.61001 0.66364 1.32756 1.42286 1.50599 1.53655 1.67904 2.12438 2.16821 2.68496 2.84701 3.17656 3.50998 3.61945 3.79821 3.86439 3.90107 4.04542 4.05974 4.15861 4.20566 4.36726 4.48251 4.56858 4.60174 4.61415 4.70416 4.70557 4.78312 4.81155 5.04089 5.07933 5.11643 5.13657 5.16937 5.23701 5.29453 5.33329 5.44879 5.52907 5.56029 5.71389 5.78036 5.86519 6.02041 6.22169 6.38354 6.54681 6.96310 7.27241 7.30700 7.77483 8.75197 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.022216 B = 0.002163 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.043755 B =12944.164056 C =13396.836894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.129 4.129 3 C -0.082 4.082 4 H 0.108 0.892 5 C -0.153 4.153 6 C 0.128 3.872 7 H 0.105 0.895 8 N -0.701 5.701 9 C 0.514 3.486 10 O -0.575 6.575 11 C -0.078 4.078 12 C -0.144 4.144 13 C -0.054 4.054 14 C -0.204 4.204 15 C 0.112 3.888 16 O -0.232 6.232 17 C -0.414 4.414 18 H 0.097 0.903 19 C -0.024 4.024 20 N -0.920 5.920 21 Si 1.019 2.981 22 H -0.260 1.260 23 H -0.269 1.269 24 H -0.257 1.257 25 C -0.245 4.245 26 C -0.064 4.064 27 C 0.506 3.494 28 N -0.839 5.839 29 O -0.581 6.581 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.060 0.940 37 H 0.039 0.961 38 H 0.418 0.582 39 H 0.119 0.881 40 H 0.139 0.861 41 H 0.153 0.847 42 H 0.116 0.884 43 H 0.273 0.727 44 H 0.114 0.886 45 H 0.128 0.872 46 H 0.415 0.585 47 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.126 -6.967 -12.088 33.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.167 4.167 3 C -0.101 4.101 4 H 0.126 0.874 5 C -0.210 4.210 6 C 0.019 3.981 7 H 0.123 0.877 8 N -0.355 5.355 9 C 0.302 3.698 10 O -0.454 6.454 11 C -0.118 4.118 12 C -0.145 4.145 13 C -0.071 4.071 14 C -0.223 4.223 15 C 0.062 3.938 16 O -0.139 6.139 17 C -0.490 4.490 18 H 0.115 0.885 19 C -0.221 4.221 20 N -0.558 5.558 21 Si 0.838 3.162 22 H -0.185 1.185 23 H -0.194 1.194 24 H -0.181 1.181 25 C -0.264 4.264 26 C -0.082 4.082 27 C 0.290 3.710 28 N -0.404 5.404 29 O -0.461 6.461 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.079 0.921 37 H 0.058 0.942 38 H 0.256 0.744 39 H 0.137 0.863 40 H 0.157 0.843 41 H 0.170 0.830 42 H 0.134 0.866 43 H 0.082 0.918 44 H 0.132 0.868 45 H 0.146 0.854 46 H 0.246 0.754 47 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -29.216 -7.035 -11.834 32.297 hybrid contribution 1.202 -0.373 -0.405 1.322 sum -28.014 -7.408 -12.239 31.456 Atomic orbital electron populations 1.21772 0.94281 1.02326 1.02364 1.21753 0.97457 0.94353 1.03186 1.21393 0.88692 0.99267 1.00775 0.87385 1.21956 1.02747 1.00502 0.95822 1.21075 0.96392 0.84531 0.96094 0.87688 1.45626 1.21613 1.08338 1.59889 1.21226 0.80248 0.92210 0.76113 1.90737 1.56820 1.48752 1.49074 1.20523 0.94440 0.92827 1.03971 1.19226 0.94192 1.07605 0.93523 1.20893 0.96208 0.96111 0.93931 1.20461 0.90772 1.11376 0.99678 1.19945 0.87077 0.94358 0.92398 1.83944 1.11716 1.82101 1.36104 1.21783 0.82912 1.52836 0.91458 0.88518 1.26604 1.01633 0.95847 0.98056 1.70185 1.25532 1.48623 1.11472 0.84584 0.75025 0.79298 0.77261 1.18479 1.19360 1.18077 1.21191 0.99220 1.12001 0.93969 1.20893 0.91347 0.96369 0.99619 1.21446 0.77315 0.83410 0.88787 1.43875 1.68435 1.06525 1.21572 1.90713 1.48455 1.64277 1.42617 0.92331 0.92093 0.92073 0.91271 0.90364 0.89971 0.92117 0.94165 0.74369 0.86266 0.84319 0.82953 0.86595 0.91797 0.86806 0.85413 0.75357 0.76330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.66 71.98 0.70 -0.05 16 2 C -0.13 -0.80 4.49 30.60 0.14 -0.67 16 3 C -0.08 -0.72 2.34 -10.79 -0.03 -0.74 16 4 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 5 C -0.15 -1.47 8.47 71.98 0.61 -0.86 16 6 C 0.13 2.09 2.17 44.25 0.10 2.18 16 7 H 0.11 1.85 7.58 -2.39 -0.02 1.83 16 8 N -0.70 -12.56 4.58 -446.09 -2.04 -14.60 16 9 C 0.51 13.35 7.78 87.66 0.68 14.03 16 10 O -0.58 -21.09 15.70 -3.04 -0.05 -21.14 16 11 C -0.08 -1.73 5.83 29.10 0.17 -1.56 16 12 C -0.14 -4.87 4.38 -19.83 -0.09 -4.95 16 13 C -0.05 -1.91 9.69 22.25 0.22 -1.69 16 14 C -0.20 -9.26 9.99 22.39 0.22 -9.04 16 15 C 0.11 6.03 6.65 22.57 0.15 6.18 16 16 O -0.23 -14.74 9.76 -22.81 -0.22 -14.97 16 17 C -0.41 -25.42 9.45 67.92 0.64 -24.78 16 18 H 0.10 5.54 5.28 -2.91 -0.02 5.52 16 19 C -0.02 -1.43 5.49 84.83 0.47 -0.96 16 20 N -0.92 -58.35 13.67 21.61 0.30 -58.05 16 21 Si 1.02 44.89 29.55 68.60 2.03 46.92 16 22 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 23 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 24 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 25 C -0.24 -11.82 9.14 22.39 0.20 -11.62 16 26 C -0.06 -2.53 9.69 22.25 0.22 -2.31 16 27 C 0.51 10.55 5.57 87.66 0.49 11.04 16 28 N -0.84 -11.26 7.57 -173.54 -1.31 -12.58 16 29 O -0.58 -17.26 17.10 -3.02 -0.05 -17.31 16 30 H 0.06 0.30 6.55 -2.38 -0.02 0.28 16 31 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 32 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 33 H 0.07 0.47 6.34 -2.39 -0.02 0.45 16 34 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 35 H 0.08 0.52 6.55 -2.39 -0.02 0.51 16 36 H 0.06 0.56 6.72 -2.39 -0.02 0.54 16 37 H 0.04 0.57 6.91 -2.39 -0.02 0.55 16 38 H 0.42 4.94 7.12 -92.71 -0.66 4.28 16 39 H 0.12 2.16 8.08 -2.38 -0.02 2.14 16 40 H 0.14 1.92 8.08 -2.39 -0.02 1.90 16 41 H 0.15 4.07 8.06 -2.91 -0.02 4.05 16 42 H 0.12 5.13 8.06 -2.91 -0.02 5.11 16 43 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 44 H 0.11 5.63 5.70 -2.91 -0.02 5.61 16 45 H 0.13 4.36 8.06 -2.91 -0.02 4.34 16 46 H 0.41 3.18 7.96 -92.71 -0.74 2.44 16 47 H 0.41 4.85 8.93 -92.70 -0.83 4.02 16 Total: -1.00 -90.40 386.88 2.34 -88.06 By element: Atomic # 1 Polarization: 30.65 SS G_CDS: -1.19 Total: 29.46 kcal Atomic # 6 Polarization: -30.67 SS G_CDS: 4.88 Total: -25.79 kcal Atomic # 7 Polarization: -82.17 SS G_CDS: -3.06 Total: -85.23 kcal Atomic # 8 Polarization: -53.09 SS G_CDS: -0.32 Total: -53.41 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -90.40 2.34 -88.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110172234.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.174 kcal (2) G-P(sol) polarization free energy of solvation -90.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds