Wall clock time and date at job start Tue Mar 31 2020 18:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47721 * 2 1 4 4 N 1.46499 * 109.47467 * 179.97438 * 3 2 1 5 5 C 1.46495 * 120.00023 * 270.00070 * 4 3 2 6 6 C 1.50704 * 109.46803 * 269.99993 * 5 4 3 7 7 O 1.21281 * 120.00514 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99872 * 179.97438 * 6 5 4 9 9 C 1.46501 * 120.00241 * 179.97438 * 8 6 5 10 10 C 1.34775 * 119.99805 * 90.00046 * 4 3 2 11 11 O 1.21287 * 119.99798 * 180.02562 * 10 4 3 12 12 C 1.50705 * 120.00246 * 359.97438 * 10 4 3 13 13 C 1.50695 * 109.46992 * 180.02562 * 12 10 4 14 14 C 1.38299 * 119.93247 * 90.00201 * 13 12 10 15 15 C 1.38101 * 120.07425 * 179.97438 * 14 13 12 16 16 C 1.38886 * 119.92536 * 0.02562 * 15 14 13 17 17 O 1.35750 * 120.06440 * 180.02562 * 16 15 14 18 18 C 1.34828 * 117.00075 * 5.53777 * 17 16 15 19 19 H 1.07993 * 120.00518 * 354.94289 * 18 17 16 20 20 C 1.38663 * 119.99751 * 174.94575 * 18 17 16 21 21 N 1.31556 * 120.00220 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99821 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47264 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47375 * 119.99795 * 22 20 18 25 25 H 1.48506 * 109.47301 * 239.99793 * 22 20 18 26 26 C 1.38874 * 119.86623 * 0.27854 * 16 15 14 27 27 C 1.38106 * 119.92542 * 359.44577 * 26 16 15 28 28 H 1.09004 * 109.47225 * 60.00042 * 1 2 3 29 29 H 1.08999 * 109.47336 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47123 * 300.00144 * 1 2 3 31 31 H 1.09003 * 109.47123 * 239.99855 * 2 1 3 32 32 H 1.09004 * 109.47225 * 119.99958 * 2 1 3 33 33 H 1.09003 * 109.46940 * 59.99744 * 3 2 1 34 34 H 1.09004 * 109.46737 * 300.00257 * 3 2 1 35 35 H 1.09002 * 109.47087 * 29.99700 * 5 4 3 36 36 H 1.08991 * 109.47245 * 150.00143 * 5 4 3 37 37 H 0.97005 * 119.99764 * 359.97438 * 8 6 5 38 38 H 1.09005 * 109.46610 * 60.00123 * 9 8 6 39 39 H 1.08999 * 109.47106 * 179.97438 * 9 8 6 40 40 H 1.08997 * 109.47387 * 300.00739 * 9 8 6 41 41 H 1.08998 * 109.46621 * 60.00483 * 12 10 4 42 42 H 1.08996 * 109.47266 * 300.00146 * 12 10 4 43 43 H 1.07999 * 119.96503 * 0.02562 * 14 13 12 44 44 H 1.07992 * 120.03608 * 180.02562 * 15 14 13 45 45 H 0.96996 * 120.00178 * 179.97438 * 21 20 18 46 46 H 1.07996 * 120.03745 * 179.72497 * 26 16 15 47 47 H 1.07997 * 119.96326 * 180.27708 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4423 0.0006 5 6 4.2370 1.4425 1.2696 6 6 4.4880 2.8634 1.7045 7 8 4.0947 3.7852 1.0215 8 7 5.1497 3.1099 2.8526 9 6 5.3942 4.4911 3.2751 10 6 4.1794 1.4421 -1.1663 11 8 5.3923 1.4416 -1.1658 12 6 3.4264 1.4414 -2.4718 13 6 4.4062 1.4407 -3.6167 14 6 4.8548 0.2418 -4.1404 15 6 5.7523 0.2378 -5.1900 16 6 6.2048 1.4394 -5.7193 17 8 7.0866 1.4387 -6.7514 18 6 7.3956 0.2427 -7.2918 19 1 7.0113 -0.6649 -6.8502 20 6 8.2068 0.1779 -8.4145 21 7 8.6746 1.2835 -8.9527 22 14 8.6343 -1.4790 -9.1635 23 1 7.9872 -2.5596 -8.3768 24 1 8.1487 -1.5284 -10.5659 25 1 10.1073 -1.6664 -9.1428 26 6 5.7574 2.6416 -5.1872 27 6 4.8555 2.6389 -4.1414 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.6476 0.9288 2.0291 36 1 5.1894 0.9287 1.1398 37 1 5.4639 2.3726 3.3991 38 1 4.4419 5.0055 3.4044 39 1 5.9379 4.4912 4.2198 40 1 5.9842 5.0044 2.5158 41 1 2.7996 2.3312 -2.5301 42 1 2.8001 0.5513 -2.5295 43 1 4.5022 -0.6922 -3.7286 44 1 6.1019 -0.6987 -5.5987 45 1 9.2424 1.2381 -9.7378 46 1 6.1109 3.5776 -5.5938 47 1 4.5037 3.5735 -3.7300 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110656085.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:47 Heat of formation + Delta-G solvation = -74.732438 kcal Electronic energy + Delta-G solvation = -28378.350743 eV Core-core repulsion = 24334.082278 eV Total energy + Delta-G solvation = -4044.268465 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.51919 -39.30466 -38.65956 -36.61429 -36.13911 -34.81253 -33.21602 -32.40585 -31.44694 -30.05799 -29.38100 -26.88274 -26.58797 -25.48640 -24.69655 -22.11812 -21.85412 -21.25507 -20.52093 -19.13982 -17.89467 -17.65147 -17.21315 -16.94366 -16.69124 -15.65139 -15.43070 -15.19026 -14.91299 -14.52841 -14.48009 -14.16615 -13.88957 -13.71981 -13.58102 -13.46715 -13.37804 -13.18828 -12.62329 -12.59524 -12.47770 -12.40197 -12.32778 -11.91684 -11.83114 -11.65310 -11.45543 -11.20926 -11.00454 -10.77167 -10.64165 -10.51850 -10.36184 -10.31950 -9.66055 -9.42414 -9.24105 -8.80089 -8.75602 -8.04979 -7.07082 -6.38005 -3.96301 2.30379 2.35041 2.41475 2.61041 2.86723 3.16285 3.17802 3.22340 3.23625 4.02590 4.44053 4.47784 4.57041 4.68408 4.76555 4.89609 4.95487 5.00945 5.08541 5.15747 5.19830 5.21522 5.25980 5.37228 5.40310 5.43534 5.49627 5.51767 5.66201 5.72309 5.78065 5.82019 5.96193 5.97340 6.07699 6.27595 6.31429 6.51882 6.80100 7.00961 7.13656 7.16058 7.29021 7.35336 7.46760 7.53542 7.93645 7.97568 8.07749 8.31443 9.07871 9.79895 10.80446 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014905 B = 0.002440 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.096176 B =11471.576806 C =12508.270704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.145 4.145 3 C 0.113 3.887 4 N -0.606 5.606 5 C 0.098 3.902 6 C 0.494 3.506 7 O -0.525 6.525 8 N -0.739 5.739 9 C 0.088 3.912 10 C 0.519 3.481 11 O -0.517 6.517 12 C -0.076 4.076 13 C -0.169 4.169 14 C -0.057 4.057 15 C -0.233 4.233 16 C 0.157 3.843 17 O -0.180 6.180 18 C -0.389 4.389 19 H 0.092 0.908 20 C 0.037 3.963 21 N -0.864 5.864 22 Si 0.941 3.059 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.191 4.191 27 C -0.058 4.058 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.104 0.896 36 H 0.113 0.887 37 H 0.401 0.599 38 H 0.058 0.942 39 H 0.074 0.926 40 H 0.060 0.940 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.103 0.897 44 H 0.126 0.874 45 H 0.268 0.732 46 H 0.116 0.884 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.821 -1.752 25.104 29.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.184 4.184 3 C -0.010 4.010 4 N -0.340 5.340 5 C -0.029 4.029 6 C 0.279 3.721 7 O -0.400 6.400 8 N -0.392 5.392 9 C -0.056 4.056 10 C 0.308 3.692 11 O -0.391 6.391 12 C -0.116 4.116 13 C -0.170 4.170 14 C -0.075 4.075 15 C -0.252 4.252 16 C 0.103 3.897 17 O -0.083 6.083 18 C -0.466 4.466 19 H 0.109 0.891 20 C -0.166 4.166 21 N -0.499 5.499 22 Si 0.766 3.234 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.202 1.202 26 C -0.210 4.210 27 C -0.077 4.077 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.122 0.878 36 H 0.131 0.869 37 H 0.235 0.765 38 H 0.076 0.924 39 H 0.093 0.907 40 H 0.078 0.922 41 H 0.111 0.889 42 H 0.110 0.890 43 H 0.121 0.879 44 H 0.144 0.856 45 H 0.078 0.922 46 H 0.134 0.866 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -14.160 -0.814 24.243 28.087 hybrid contribution 0.403 -1.130 0.146 1.208 sum -13.757 -1.944 24.388 28.068 Atomic orbital electron populations 1.21703 0.94949 1.02081 1.02105 1.22009 0.96303 0.97129 1.02937 1.21652 0.78862 0.96675 1.03788 1.47650 1.06577 1.75161 1.04584 1.21196 1.00492 0.93587 0.87665 1.21417 0.77595 0.92621 0.80483 1.90719 1.50107 1.46214 1.52946 1.45798 1.59512 1.09283 1.24633 1.21514 1.01414 0.82712 0.99945 1.21075 0.88301 0.74741 0.85035 1.90728 1.14027 1.47404 1.86928 1.20439 0.97476 1.03737 0.89944 1.18660 1.04642 0.93716 1.00016 1.20485 0.95877 0.96069 0.95062 1.21092 1.04230 0.98358 1.01504 1.19382 0.88473 0.93265 0.88549 1.83979 1.51036 1.32908 1.40388 1.21373 1.31326 0.83174 1.10707 0.89065 1.25285 0.96363 0.99213 0.95764 1.70053 1.31760 1.26902 1.21234 0.85651 0.78551 0.80244 0.78988 1.19135 1.20191 1.20206 1.20155 1.03355 0.96211 1.01310 1.20427 0.95910 0.96429 0.94891 0.92240 0.92368 0.92673 0.91214 0.91741 0.90637 0.89713 0.87820 0.86871 0.76546 0.92367 0.90710 0.92175 0.88887 0.89004 0.87890 0.85615 0.92160 0.86575 0.87377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.91 37.15 0.37 -0.42 16 2 C -0.15 -0.93 6.26 -26.74 -0.17 -1.10 16 3 C 0.11 0.91 5.21 -4.04 -0.02 0.89 16 4 N -0.61 -6.79 1.96 -175.06 -0.34 -7.13 16 5 C 0.10 0.90 5.89 -5.19 -0.03 0.87 16 6 C 0.49 5.57 7.90 -10.98 -0.09 5.49 16 7 O -0.53 -8.34 16.43 5.56 0.09 -8.25 16 8 N -0.74 -5.68 5.71 -67.07 -0.38 -6.07 16 9 C 0.09 0.63 10.70 59.85 0.64 1.27 16 10 C 0.52 7.92 7.67 -10.98 -0.08 7.83 16 11 O -0.52 -10.25 15.61 5.55 0.09 -10.17 16 12 C -0.08 -1.07 4.38 -29.04 -0.13 -1.20 16 13 C -0.17 -3.15 4.38 -104.58 -0.46 -3.61 16 14 C -0.06 -1.12 9.69 -39.61 -0.38 -1.50 16 15 C -0.23 -5.39 9.17 -39.39 -0.36 -5.75 16 16 C 0.16 4.04 6.65 -39.11 -0.26 3.78 16 17 O -0.18 -5.37 9.76 0.05 0.00 -5.37 16 18 C -0.39 -11.29 9.49 30.89 0.29 -11.00 16 19 H 0.09 2.46 5.20 -52.49 -0.27 2.18 16 20 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 21 N -0.86 -26.10 13.67 55.48 0.76 -25.34 16 22 Si 0.94 21.13 29.55 -169.99 -5.02 16.11 16 23 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 24 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 25 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 26 C -0.19 -4.41 9.99 -39.39 -0.39 -4.80 16 27 C -0.06 -1.17 9.69 -39.61 -0.38 -1.55 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.52 7.22 -51.93 -0.37 0.14 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.54 8.07 -51.93 -0.42 0.12 16 34 H 0.08 0.68 6.44 -51.93 -0.33 0.34 16 35 H 0.10 0.53 8.07 -51.93 -0.42 0.11 16 36 H 0.11 1.11 7.42 -51.93 -0.39 0.73 16 37 H 0.40 1.67 8.83 -40.82 -0.36 1.31 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.09 1.14 7.34 -51.93 -0.38 0.76 16 42 H 0.09 1.03 7.13 -51.93 -0.37 0.66 16 43 H 0.10 1.73 8.06 -52.49 -0.42 1.30 16 44 H 0.13 2.89 5.64 -52.49 -0.30 2.60 16 45 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 46 H 0.12 2.59 8.06 -52.49 -0.42 2.16 16 47 H 0.11 1.91 8.06 -52.49 -0.42 1.49 16 LS Contribution 397.33 15.07 5.99 5.99 Total: -1.00 -38.84 397.33 -7.35 -46.19 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -6.98 Total: 3.88 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: -1.55 Total: -9.83 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: 0.03 Total: -38.54 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: 0.18 Total: -23.78 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -38.84 -7.35 -46.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110656085.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.542 kcal (2) G-P(sol) polarization free energy of solvation -38.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds