Wall clock time and date at job start Tue Mar 31 2020 18:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47721 * 2 1 4 4 N 1.46499 * 109.47467 * 179.97438 * 3 2 1 5 5 C 1.46495 * 120.00023 * 270.00070 * 4 3 2 6 6 C 1.50704 * 109.46803 * 269.99993 * 5 4 3 7 7 O 1.21281 * 120.00514 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99872 * 179.97438 * 6 5 4 9 9 C 1.46501 * 120.00241 * 179.97438 * 8 6 5 10 10 C 1.34775 * 119.99805 * 90.00046 * 4 3 2 11 11 O 1.21287 * 119.99798 * 180.02562 * 10 4 3 12 12 C 1.50705 * 120.00246 * 359.97438 * 10 4 3 13 13 C 1.50695 * 109.46992 * 180.02562 * 12 10 4 14 14 C 1.38299 * 119.93247 * 90.00201 * 13 12 10 15 15 C 1.38101 * 120.07425 * 179.97438 * 14 13 12 16 16 C 1.38886 * 119.92536 * 0.02562 * 15 14 13 17 17 O 1.35750 * 120.06440 * 180.02562 * 16 15 14 18 18 C 1.34828 * 117.00075 * 5.53777 * 17 16 15 19 19 H 1.07993 * 120.00518 * 354.94289 * 18 17 16 20 20 C 1.38663 * 119.99751 * 174.94575 * 18 17 16 21 21 N 1.31556 * 120.00220 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99821 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47264 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47375 * 119.99795 * 22 20 18 25 25 H 1.48506 * 109.47301 * 239.99793 * 22 20 18 26 26 C 1.38874 * 119.86623 * 0.27854 * 16 15 14 27 27 C 1.38106 * 119.92542 * 359.44577 * 26 16 15 28 28 H 1.09004 * 109.47225 * 60.00042 * 1 2 3 29 29 H 1.08999 * 109.47336 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47123 * 300.00144 * 1 2 3 31 31 H 1.09003 * 109.47123 * 239.99855 * 2 1 3 32 32 H 1.09004 * 109.47225 * 119.99958 * 2 1 3 33 33 H 1.09003 * 109.46940 * 59.99744 * 3 2 1 34 34 H 1.09004 * 109.46737 * 300.00257 * 3 2 1 35 35 H 1.09002 * 109.47087 * 29.99700 * 5 4 3 36 36 H 1.08991 * 109.47245 * 150.00143 * 5 4 3 37 37 H 0.97005 * 119.99764 * 359.97438 * 8 6 5 38 38 H 1.09005 * 109.46610 * 60.00123 * 9 8 6 39 39 H 1.08999 * 109.47106 * 179.97438 * 9 8 6 40 40 H 1.08997 * 109.47387 * 300.00739 * 9 8 6 41 41 H 1.08998 * 109.46621 * 60.00483 * 12 10 4 42 42 H 1.08996 * 109.47266 * 300.00146 * 12 10 4 43 43 H 1.07999 * 119.96503 * 0.02562 * 14 13 12 44 44 H 1.07992 * 120.03608 * 180.02562 * 15 14 13 45 45 H 0.96996 * 120.00178 * 179.97438 * 21 20 18 46 46 H 1.07996 * 120.03745 * 179.72497 * 26 16 15 47 47 H 1.07997 * 119.96326 * 180.27708 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4423 0.0006 5 6 4.2370 1.4425 1.2696 6 6 4.4880 2.8634 1.7045 7 8 4.0947 3.7852 1.0215 8 7 5.1497 3.1099 2.8526 9 6 5.3942 4.4911 3.2751 10 6 4.1794 1.4421 -1.1663 11 8 5.3923 1.4416 -1.1658 12 6 3.4264 1.4414 -2.4718 13 6 4.4062 1.4407 -3.6167 14 6 4.8548 0.2418 -4.1404 15 6 5.7523 0.2378 -5.1900 16 6 6.2048 1.4394 -5.7193 17 8 7.0866 1.4387 -6.7514 18 6 7.3956 0.2427 -7.2918 19 1 7.0113 -0.6649 -6.8502 20 6 8.2068 0.1779 -8.4145 21 7 8.6746 1.2835 -8.9527 22 14 8.6343 -1.4790 -9.1635 23 1 7.9872 -2.5596 -8.3768 24 1 8.1487 -1.5284 -10.5659 25 1 10.1073 -1.6664 -9.1428 26 6 5.7574 2.6416 -5.1872 27 6 4.8555 2.6389 -4.1414 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.6476 0.9288 2.0291 36 1 5.1894 0.9287 1.1398 37 1 5.4639 2.3726 3.3991 38 1 4.4419 5.0055 3.4044 39 1 5.9379 4.4912 4.2198 40 1 5.9842 5.0044 2.5158 41 1 2.7996 2.3312 -2.5301 42 1 2.8001 0.5513 -2.5295 43 1 4.5022 -0.6922 -3.7286 44 1 6.1019 -0.6987 -5.5987 45 1 9.2424 1.2381 -9.7378 46 1 6.1109 3.5776 -5.5938 47 1 4.5037 3.5735 -3.7300 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110656085.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:46 Heat of formation + Delta-G solvation = -102.399845 kcal Electronic energy + Delta-G solvation = -28379.550492 eV Core-core repulsion = 24334.082278 eV Total energy + Delta-G solvation = -4045.468214 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.53317 -40.75385 -40.02468 -38.26149 -37.17987 -35.60700 -34.41244 -33.85354 -32.95022 -31.79700 -30.31269 -28.25307 -27.25801 -27.14120 -25.88476 -23.65293 -22.78715 -22.41160 -21.69123 -20.18734 -19.82690 -18.83113 -18.47522 -18.17712 -17.63610 -16.65393 -16.53448 -16.26292 -16.22748 -15.94085 -15.70107 -15.51099 -15.48306 -15.08907 -14.74970 -14.65453 -14.41348 -14.18011 -14.07936 -14.04694 -13.59556 -13.13121 -13.09151 -12.99651 -12.94113 -12.83194 -12.59537 -12.47171 -12.30269 -12.24423 -12.12971 -12.07063 -11.50745 -11.24598 -11.18027 -10.92604 -10.74694 -10.16012 -9.78168 -9.69333 -8.91337 -8.47174 -6.15538 0.59699 0.65364 1.34346 1.43091 1.53617 1.54725 1.62467 1.91535 2.17936 2.46115 2.82439 3.15286 3.50092 3.71885 3.82580 3.91030 4.01065 4.03678 4.17980 4.18939 4.28135 4.41487 4.43442 4.44154 4.54571 4.57445 4.58630 4.61515 4.63913 4.77317 4.83171 4.91074 5.03747 5.07720 5.14337 5.24147 5.28693 5.31683 5.41278 5.47610 5.55777 5.57991 5.70092 5.76721 6.02781 6.18975 6.35805 6.51908 6.97145 7.19497 7.26455 7.78553 8.76733 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014905 B = 0.002440 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.096176 B =11471.576806 C =12508.270704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.138 4.138 3 C 0.107 3.893 4 N -0.597 5.597 5 C 0.095 3.905 6 C 0.487 3.513 7 O -0.580 6.580 8 N -0.724 5.724 9 C 0.085 3.915 10 C 0.516 3.484 11 O -0.576 6.576 12 C -0.076 4.076 13 C -0.145 4.145 14 C -0.056 4.056 15 C -0.240 4.240 16 C 0.114 3.886 17 O -0.234 6.234 18 C -0.414 4.414 19 H 0.102 0.898 20 C -0.026 4.026 21 N -0.923 5.923 22 Si 1.022 2.978 23 H -0.250 1.250 24 H -0.266 1.266 25 H -0.269 1.269 26 C -0.206 4.206 27 C -0.061 4.061 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.152 0.848 36 H 0.108 0.892 37 H 0.420 0.580 38 H 0.053 0.947 39 H 0.112 0.888 40 H 0.035 0.965 41 H 0.117 0.883 42 H 0.130 0.870 43 H 0.142 0.858 44 H 0.121 0.879 45 H 0.273 0.727 46 H 0.110 0.890 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.471 -3.955 28.340 33.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.176 4.176 3 C -0.014 4.014 4 N -0.329 5.329 5 C -0.031 4.031 6 C 0.273 3.727 7 O -0.459 6.459 8 N -0.377 5.377 9 C -0.059 4.059 10 C 0.306 3.694 11 O -0.454 6.454 12 C -0.115 4.115 13 C -0.146 4.146 14 C -0.074 4.074 15 C -0.260 4.260 16 C 0.064 3.936 17 O -0.141 6.141 18 C -0.490 4.490 19 H 0.119 0.881 20 C -0.222 4.222 21 N -0.561 5.561 22 Si 0.841 3.159 23 H -0.174 1.174 24 H -0.191 1.191 25 H -0.194 1.194 26 C -0.226 4.226 27 C -0.079 4.079 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.170 0.830 36 H 0.126 0.874 37 H 0.257 0.743 38 H 0.072 0.928 39 H 0.131 0.869 40 H 0.054 0.946 41 H 0.135 0.865 42 H 0.148 0.852 43 H 0.160 0.840 44 H 0.139 0.861 45 H 0.082 0.918 46 H 0.128 0.872 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -16.878 -3.036 27.599 32.492 hybrid contribution 0.994 -0.323 -0.479 1.150 sum -15.883 -3.359 27.119 31.607 Atomic orbital electron populations 1.21692 0.94029 1.02443 1.02525 1.21938 0.96943 0.95644 1.03110 1.21918 0.76710 0.98151 1.04651 1.47659 1.07947 1.73061 1.04202 1.21458 1.01126 0.92670 0.87855 1.21830 0.77233 0.92879 0.80775 1.90695 1.52684 1.47773 1.54753 1.45735 1.57891 1.10348 1.23770 1.21615 1.01298 0.82119 1.00872 1.21136 0.87595 0.74286 0.86379 1.90722 1.16285 1.50585 1.87841 1.20550 0.96595 1.06841 0.87528 1.19226 1.03099 0.92571 0.99696 1.20908 0.94497 0.98333 0.93630 1.21231 1.05015 0.97204 1.02506 1.19889 0.89579 0.95250 0.88880 1.83942 1.53745 1.33675 1.42696 1.21892 1.32002 0.83593 1.11477 0.88072 1.26657 0.95801 1.03944 0.95846 1.70203 1.33579 1.29920 1.22427 0.84491 0.78521 0.74729 0.78182 1.17352 1.19104 1.19378 1.20383 1.04359 0.95404 1.02417 1.20804 0.94821 0.98536 0.93745 0.92256 0.92046 0.91920 0.91867 0.90814 0.89383 0.89476 0.83012 0.87428 0.74281 0.92819 0.86930 0.94621 0.86470 0.85250 0.83998 0.86098 0.91832 0.87219 0.84730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 71.98 0.71 -0.28 16 2 C -0.14 -1.18 6.26 30.59 0.19 -0.98 16 3 C 0.11 1.30 5.21 86.38 0.45 1.75 16 4 N -0.60 -11.51 1.96 -826.16 -1.62 -13.13 16 5 C 0.10 1.47 5.89 85.64 0.50 1.98 16 6 C 0.49 10.10 7.90 87.66 0.69 10.79 16 7 O -0.58 -17.96 16.43 -3.03 -0.05 -18.01 16 8 N -0.72 -9.55 5.71 -484.51 -2.77 -12.31 16 9 C 0.09 1.08 10.70 127.77 1.37 2.45 16 10 C 0.52 14.42 7.67 87.66 0.67 15.09 16 11 O -0.58 -22.21 15.61 -3.05 -0.05 -22.26 16 12 C -0.08 -1.85 4.38 29.10 0.13 -1.72 16 13 C -0.14 -5.09 4.38 -19.84 -0.09 -5.18 16 14 C -0.06 -2.10 9.69 22.25 0.22 -1.89 16 15 C -0.24 -11.35 9.17 22.39 0.21 -11.14 16 16 C 0.11 6.20 6.65 22.58 0.15 6.35 16 17 O -0.23 -14.97 9.76 -22.72 -0.22 -15.19 16 18 C -0.41 -25.25 9.49 67.92 0.64 -24.61 16 19 H 0.10 5.68 5.20 -2.91 -0.02 5.66 16 20 C -0.03 -1.51 5.49 84.84 0.47 -1.04 16 21 N -0.92 -58.78 13.67 21.62 0.30 -58.49 16 22 Si 1.02 44.37 29.55 68.60 2.03 46.40 16 23 H -0.25 -10.00 7.11 99.48 0.71 -9.30 16 24 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 25 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 26 C -0.21 -9.94 9.99 22.39 0.22 -9.71 16 27 C -0.06 -2.41 9.69 22.25 0.22 -2.20 16 28 H 0.06 0.41 8.14 -2.38 -0.02 0.39 16 29 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.06 0.65 7.22 -2.39 -0.02 0.63 16 32 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 33 H 0.09 0.90 8.07 -2.39 -0.02 0.88 16 34 H 0.09 1.04 6.44 -2.38 -0.02 1.02 16 35 H 0.15 0.83 8.07 -2.39 -0.02 0.81 16 36 H 0.11 1.87 7.42 -2.39 -0.02 1.85 16 37 H 0.42 2.21 8.83 -92.70 -0.82 1.40 16 38 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 39 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.12 2.37 7.34 -2.39 -0.02 2.35 16 42 H 0.13 2.23 7.13 -2.39 -0.02 2.22 16 43 H 0.14 4.23 8.06 -2.91 -0.02 4.21 16 44 H 0.12 5.71 5.64 -2.91 -0.02 5.69 16 45 H 0.27 15.81 8.31 -92.71 -0.77 15.03 16 46 H 0.11 5.24 8.06 -2.91 -0.02 5.22 16 47 H 0.13 4.56 8.06 -2.91 -0.02 4.53 16 Total: -1.00 -92.95 397.33 4.54 -88.41 By element: Atomic # 1 Polarization: 24.75 SS G_CDS: 0.17 Total: 24.92 kcal Atomic # 6 Polarization: -27.09 SS G_CDS: 6.75 Total: -20.33 kcal Atomic # 7 Polarization: -79.84 SS G_CDS: -4.09 Total: -83.93 kcal Atomic # 8 Polarization: -55.14 SS G_CDS: -0.32 Total: -55.46 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -92.95 4.54 -88.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110656085.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.990 kcal (2) G-P(sol) polarization free energy of solvation -92.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds