Wall clock time and date at job start Tue Mar 31 2020 18:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46962 * 2 1 4 4 N 1.46499 * 109.47163 * 180.02562 * 3 2 1 5 5 C 1.36940 * 119.99762 * 270.00027 * 4 3 2 6 6 H 1.08000 * 119.99629 * 326.10703 * 5 4 3 7 7 C 1.38810 * 120.00095 * 146.10610 * 5 4 3 8 8 N 1.31624 * 119.99761 * 337.72934 * 7 5 4 9 9 Si 1.86800 * 120.00014 * 157.73159 * 7 5 4 10 10 H 1.48496 * 109.46988 * 90.00095 * 9 7 5 11 11 H 1.48506 * 109.46971 * 209.99971 * 9 7 5 12 12 H 1.48495 * 109.46978 * 330.00051 * 9 7 5 13 13 C 1.46494 * 120.00389 * 89.99966 * 4 3 2 14 14 C 1.50703 * 109.47335 * 86.13670 * 13 4 3 15 15 O 1.21277 * 119.99620 * 0.02562 * 14 13 4 16 16 N 1.34773 * 119.99984 * 179.97438 * 14 13 4 17 17 C 1.46502 * 120.00205 * 0.02562 * 16 14 13 18 18 C 1.39259 * 119.99854 * 180.02562 * 16 14 13 19 19 C 1.38849 * 120.16963 * 270.00111 * 18 16 14 20 20 C 1.38015 * 120.07293 * 179.97438 * 19 18 16 21 21 C 1.38577 * 120.42262 * 359.97438 * 20 19 18 22 22 C 1.37778 * 120.33623 * 359.97438 * 21 20 19 23 23 C 1.39756 * 119.91604 * 359.97438 * 22 21 20 24 24 C 1.47382 * 120.20585 * 180.02562 * 23 22 21 25 25 O 1.21508 * 120.00018 * 180.02562 * 24 23 22 26 26 O 1.34754 * 119.99542 * 0.02562 * 24 23 22 27 27 C 1.45201 * 116.99502 * 180.02562 * 26 24 23 28 28 H 1.08994 * 109.47662 * 60.00181 * 1 2 3 29 29 H 1.09003 * 109.47299 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46984 * 299.99509 * 1 2 3 31 31 H 1.09003 * 109.46984 * 240.00491 * 2 1 3 32 32 H 1.09001 * 109.47415 * 120.00170 * 2 1 3 33 33 H 1.08994 * 109.47298 * 59.99729 * 3 2 1 34 34 H 1.09001 * 109.47194 * 300.00306 * 3 2 1 35 35 H 0.96995 * 119.99850 * 180.02562 * 8 7 5 36 36 H 1.09010 * 109.46972 * 326.14085 * 13 4 3 37 37 H 1.08994 * 109.47858 * 206.14240 * 13 4 3 38 38 H 1.08997 * 109.47109 * 269.99994 * 17 16 14 39 39 H 1.08997 * 109.46917 * 29.99742 * 17 16 14 40 40 H 1.09003 * 109.46910 * 149.99827 * 17 16 14 41 41 H 1.07998 * 119.96358 * 359.97438 * 19 18 16 42 42 H 1.08005 * 119.79142 * 180.02562 * 20 19 18 43 43 H 1.07996 * 119.83297 * 180.02562 * 21 20 19 44 44 H 1.08000 * 120.04555 * 179.72851 * 22 21 20 45 45 H 1.08996 * 109.47534 * 59.99892 * 27 26 24 46 46 H 1.08996 * 109.47318 * 180.02562 * 27 26 24 47 47 H 1.09011 * 109.47411 * 299.99980 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1901 1.4424 1.1851 6 1 3.7880 1.9638 2.0411 7 6 5.4013 0.7721 1.2867 8 7 5.6890 -0.1983 0.4452 9 14 6.6230 1.2471 2.6176 10 1 6.3604 0.4453 3.8395 11 1 8.0038 0.9827 2.1392 12 1 6.4760 2.6910 2.9318 13 6 4.2370 1.4428 -1.2696 14 6 4.4050 2.8604 -1.7524 15 8 3.9578 3.7800 -1.1004 16 7 5.0532 3.1063 -2.9081 17 6 5.5940 1.9954 -3.6954 18 6 5.2090 4.4164 -3.3540 19 6 4.2498 4.9923 -4.1762 20 6 4.4059 6.2910 -4.6165 21 6 5.5172 7.0298 -4.2429 22 6 6.4790 6.4756 -3.4268 23 6 6.3346 5.1621 -2.9719 24 6 7.3593 4.5631 -2.0981 25 8 7.2302 3.4206 -1.7052 26 8 8.4393 5.2827 -1.7351 27 6 9.4078 4.6285 -0.8735 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6765 1.9564 -0.8900 35 1 6.5352 -0.6670 0.5164 36 1 3.6793 0.8702 -2.0108 37 1 5.2176 0.9900 -1.1235 38 1 6.6160 1.7889 -3.3780 39 1 4.9795 1.1084 -3.5418 40 1 5.5886 2.2627 -4.7522 41 1 3.3806 4.4235 -4.4716 42 1 3.6567 6.7347 -5.2556 43 1 5.6296 8.0454 -4.5926 44 1 7.3454 7.0542 -3.1421 45 1 9.8003 3.7435 -1.3743 46 1 10.2251 5.3166 -0.6575 47 1 8.9250 4.3344 0.0585 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000118004844.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:54 Heat of formation + Delta-G solvation = -52.457582 kcal Electronic energy + Delta-G solvation = -30541.883869 eV Core-core repulsion = 26498.581315 eV Total energy + Delta-G solvation = -4043.302555 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.65186 -39.30509 -38.04338 -36.17289 -35.71538 -34.66524 -32.79335 -31.53242 -30.80737 -30.17445 -27.66645 -26.97134 -26.11313 -25.46426 -23.92208 -22.88450 -21.82855 -20.89747 -20.09342 -18.90639 -17.80284 -16.88488 -16.69005 -16.39261 -16.13770 -15.76625 -15.51220 -14.98475 -14.77848 -14.27704 -14.13602 -13.94047 -13.53825 -13.27468 -13.26178 -13.00190 -12.82594 -12.52964 -12.34820 -12.22224 -12.16562 -11.99121 -11.80228 -11.50188 -11.38928 -11.22435 -10.91185 -10.68538 -10.57388 -10.54912 -10.32642 -10.17868 -10.03257 -9.88921 -9.60547 -9.04618 -9.00338 -8.72398 -8.44207 -8.22825 -6.57191 -5.77065 -3.25530 0.74875 1.28308 2.75797 2.85957 3.38324 3.46989 3.51534 3.55070 3.71871 3.77854 4.55903 4.78094 4.84837 4.93698 5.22834 5.26470 5.32007 5.34706 5.38934 5.41483 5.48752 5.57680 5.67215 5.79982 5.82323 5.86166 5.87194 6.01956 6.13583 6.15276 6.19033 6.33159 6.36921 6.38378 6.52562 6.59294 6.61731 6.65417 6.72206 6.77644 7.11797 7.27420 7.34177 7.48070 7.88704 7.99443 8.03887 8.53730 9.08068 9.29723 9.84999 10.39365 11.25737 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.010239 B = 0.005338 C = 0.003895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2734.053639 B = 5244.253788 C = 7187.869389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.139 4.139 3 C 0.154 3.846 4 N -0.560 5.560 5 C -0.243 4.243 6 H 0.061 0.939 7 C 0.010 3.990 8 N -0.890 5.890 9 Si 0.896 3.104 10 H -0.286 1.286 11 H -0.289 1.289 12 H -0.280 1.280 13 C 0.133 3.867 14 C 0.501 3.499 15 O -0.531 6.531 16 N -0.592 5.592 17 C 0.093 3.907 18 C 0.222 3.778 19 C -0.128 4.128 20 C -0.080 4.080 21 C -0.140 4.140 22 C -0.061 4.061 23 C -0.125 4.125 24 C 0.496 3.504 25 O -0.466 6.466 26 O -0.363 6.363 27 C 0.038 3.962 28 H 0.044 0.956 29 H 0.042 0.958 30 H 0.047 0.953 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.044 0.956 34 H 0.031 0.969 35 H 0.255 0.745 36 H 0.052 0.948 37 H 0.135 0.865 38 H 0.060 0.940 39 H 0.079 0.921 40 H 0.057 0.943 41 H 0.132 0.868 42 H 0.130 0.870 43 H 0.130 0.870 44 H 0.137 0.863 45 H 0.062 0.938 46 H 0.098 0.902 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.917 9.274 -12.925 16.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.179 4.179 3 C 0.028 3.972 4 N -0.277 5.277 5 C -0.372 4.372 6 H 0.078 0.922 7 C -0.189 4.189 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.213 1.213 11 H -0.215 1.215 12 H -0.205 1.205 13 C 0.002 3.998 14 C 0.291 3.709 15 O -0.405 6.405 16 N -0.327 5.327 17 C -0.049 4.049 18 C 0.130 3.870 19 C -0.147 4.147 20 C -0.099 4.099 21 C -0.158 4.158 22 C -0.079 4.079 23 C -0.128 4.128 24 C 0.339 3.661 25 O -0.351 6.351 26 O -0.281 6.281 27 C -0.055 4.055 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.050 0.950 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.152 0.848 38 H 0.078 0.922 39 H 0.098 0.902 40 H 0.076 0.924 41 H 0.150 0.850 42 H 0.147 0.853 43 H 0.148 0.852 44 H 0.155 0.845 45 H 0.081 0.919 46 H 0.117 0.883 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.767 9.226 -12.332 15.503 hybrid contribution 0.991 0.183 0.736 1.248 sum 2.758 9.410 -11.596 15.186 Atomic orbital electron populations 1.21747 0.97720 1.00263 1.00740 1.22081 0.93077 1.00680 1.02105 1.20882 0.84550 0.93190 0.98596 1.43409 0.99614 1.83310 1.01400 1.19028 1.02983 1.25358 0.89875 0.92153 1.24986 1.00314 0.95308 0.98270 1.69890 1.23578 1.20572 1.39288 0.86392 0.81010 0.78641 0.81414 1.21321 1.21470 1.20549 1.21040 1.02912 0.88277 0.87526 1.23666 0.74537 0.95496 0.77171 1.90567 1.48668 1.47281 1.53960 1.45827 1.59177 1.02932 1.24718 1.21694 1.00200 0.89043 0.93939 1.17655 0.91028 0.86317 0.91956 1.21369 0.98895 0.95844 0.98601 1.21259 0.97172 0.93525 0.97924 1.21090 0.94726 1.00355 0.99624 1.21359 0.98902 0.93011 0.94674 1.19549 0.95515 0.95763 1.01928 1.21026 0.80925 0.84665 0.79509 1.90974 1.75507 1.17800 1.50845 1.86485 1.32212 1.46090 1.63315 1.23224 0.90204 0.98398 0.93715 0.93714 0.93842 0.93380 0.93095 0.91717 0.93791 0.95032 0.93550 0.93026 0.84789 0.92177 0.90202 0.92373 0.85025 0.85258 0.85230 0.84530 0.91905 0.88320 0.91713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.91 37.16 0.37 -1.98 16 2 C -0.14 -2.81 6.26 -26.73 -0.17 -2.98 16 3 C 0.15 3.50 5.69 -4.04 -0.02 3.48 16 4 N -0.56 -14.76 1.94 -174.61 -0.34 -15.10 16 5 C -0.24 -7.03 9.49 -15.06 -0.14 -7.18 16 6 H 0.06 1.79 7.92 -52.49 -0.42 1.37 16 7 C 0.01 0.29 4.93 -17.43 -0.09 0.21 16 8 N -0.89 -25.58 11.32 55.49 0.63 -24.95 16 9 Si 0.90 22.97 29.61 -169.99 -5.03 17.93 16 10 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 11 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 12 H -0.28 -7.32 7.11 56.52 0.40 -6.92 16 13 C 0.13 3.26 4.29 -5.20 -0.02 3.24 16 14 C 0.50 11.84 6.78 -10.99 -0.07 11.76 16 15 O -0.53 -14.41 16.40 5.56 0.09 -14.31 16 16 N -0.59 -11.38 1.52 -120.60 -0.18 -11.56 16 17 C 0.09 1.47 9.88 59.85 0.59 2.06 16 18 C 0.22 3.87 4.44 -83.48 -0.37 3.50 16 19 C -0.13 -1.79 9.96 -39.44 -0.39 -2.19 16 20 C -0.08 -0.89 10.03 -39.54 -0.40 -1.28 16 21 C -0.14 -1.50 10.02 -39.62 -0.40 -1.90 16 22 C -0.06 -0.79 9.61 -39.18 -0.38 -1.17 16 23 C -0.12 -2.11 5.89 -104.82 -0.62 -2.73 16 24 C 0.50 9.35 7.89 34.45 0.27 9.62 16 25 O -0.47 -10.39 12.91 -19.27 -0.25 -10.63 16 26 O -0.36 -5.81 9.82 -40.64 -0.40 -6.21 16 27 C 0.04 0.52 10.57 101.05 1.07 1.59 16 28 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.06 1.44 8.14 -51.93 -0.42 1.02 16 33 H 0.04 1.01 8.04 -51.93 -0.42 0.60 16 34 H 0.03 0.68 8.07 -51.93 -0.42 0.26 16 35 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 36 H 0.05 1.14 7.36 -51.92 -0.38 0.76 16 37 H 0.14 3.64 5.28 -51.93 -0.27 3.37 16 38 H 0.06 1.02 7.18 -51.93 -0.37 0.65 16 39 H 0.08 1.20 6.44 -51.93 -0.33 0.87 16 40 H 0.06 0.72 8.05 -51.93 -0.42 0.30 16 41 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 42 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 43 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 44 H 0.14 1.51 7.61 -52.49 -0.40 1.11 16 45 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 47 H 0.06 1.01 8.14 -51.92 -0.42 0.59 16 LS Contribution 394.04 15.07 5.94 5.94 Total: -1.00 -35.59 394.04 -7.53 -43.12 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -7.22 Total: 1.74 kcal Atomic # 6 Polarization: 14.82 SS G_CDS: -0.77 Total: 14.05 kcal Atomic # 7 Polarization: -51.72 SS G_CDS: 0.11 Total: -51.62 kcal Atomic # 8 Polarization: -30.60 SS G_CDS: -0.56 Total: -31.16 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -5.03 Total: 17.93 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.59 -7.53 -43.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118004844.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.340 kcal (2) G-P(sol) polarization free energy of solvation -35.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds