Wall clock time and date at job start Tue Mar 31 2020 18:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46962 * 2 1 4 4 N 1.46499 * 109.47163 * 180.02562 * 3 2 1 5 5 C 1.36940 * 119.99762 * 270.00027 * 4 3 2 6 6 H 1.08000 * 119.99629 * 326.10703 * 5 4 3 7 7 C 1.38810 * 120.00095 * 146.10610 * 5 4 3 8 8 N 1.31624 * 119.99761 * 337.72934 * 7 5 4 9 9 Si 1.86800 * 120.00014 * 157.73159 * 7 5 4 10 10 H 1.48496 * 109.46988 * 90.00095 * 9 7 5 11 11 H 1.48506 * 109.46971 * 209.99971 * 9 7 5 12 12 H 1.48495 * 109.46978 * 330.00051 * 9 7 5 13 13 C 1.46494 * 120.00389 * 89.99966 * 4 3 2 14 14 C 1.50703 * 109.47335 * 86.13670 * 13 4 3 15 15 O 1.21277 * 119.99620 * 0.02562 * 14 13 4 16 16 N 1.34773 * 119.99984 * 179.97438 * 14 13 4 17 17 C 1.46502 * 120.00205 * 0.02562 * 16 14 13 18 18 C 1.39259 * 119.99854 * 180.02562 * 16 14 13 19 19 C 1.38849 * 120.16963 * 270.00111 * 18 16 14 20 20 C 1.38015 * 120.07293 * 179.97438 * 19 18 16 21 21 C 1.38577 * 120.42262 * 359.97438 * 20 19 18 22 22 C 1.37778 * 120.33623 * 359.97438 * 21 20 19 23 23 C 1.39756 * 119.91604 * 359.97438 * 22 21 20 24 24 C 1.47382 * 120.20585 * 180.02562 * 23 22 21 25 25 O 1.21508 * 120.00018 * 180.02562 * 24 23 22 26 26 O 1.34754 * 119.99542 * 0.02562 * 24 23 22 27 27 C 1.45201 * 116.99502 * 180.02562 * 26 24 23 28 28 H 1.08994 * 109.47662 * 60.00181 * 1 2 3 29 29 H 1.09003 * 109.47299 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46984 * 299.99509 * 1 2 3 31 31 H 1.09003 * 109.46984 * 240.00491 * 2 1 3 32 32 H 1.09001 * 109.47415 * 120.00170 * 2 1 3 33 33 H 1.08994 * 109.47298 * 59.99729 * 3 2 1 34 34 H 1.09001 * 109.47194 * 300.00306 * 3 2 1 35 35 H 0.96995 * 119.99850 * 180.02562 * 8 7 5 36 36 H 1.09010 * 109.46972 * 326.14085 * 13 4 3 37 37 H 1.08994 * 109.47858 * 206.14240 * 13 4 3 38 38 H 1.08997 * 109.47109 * 269.99994 * 17 16 14 39 39 H 1.08997 * 109.46917 * 29.99742 * 17 16 14 40 40 H 1.09003 * 109.46910 * 149.99827 * 17 16 14 41 41 H 1.07998 * 119.96358 * 359.97438 * 19 18 16 42 42 H 1.08005 * 119.79142 * 180.02562 * 20 19 18 43 43 H 1.07996 * 119.83297 * 180.02562 * 21 20 19 44 44 H 1.08000 * 120.04555 * 179.72851 * 22 21 20 45 45 H 1.08996 * 109.47534 * 59.99892 * 27 26 24 46 46 H 1.08996 * 109.47318 * 180.02562 * 27 26 24 47 47 H 1.09011 * 109.47411 * 299.99980 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1901 1.4424 1.1851 6 1 3.7880 1.9638 2.0411 7 6 5.4013 0.7721 1.2867 8 7 5.6890 -0.1983 0.4452 9 14 6.6230 1.2471 2.6176 10 1 6.3604 0.4453 3.8395 11 1 8.0038 0.9827 2.1392 12 1 6.4760 2.6910 2.9318 13 6 4.2370 1.4428 -1.2696 14 6 4.4050 2.8604 -1.7524 15 8 3.9578 3.7800 -1.1004 16 7 5.0532 3.1063 -2.9081 17 6 5.5940 1.9954 -3.6954 18 6 5.2090 4.4164 -3.3540 19 6 4.2498 4.9923 -4.1762 20 6 4.4059 6.2910 -4.6165 21 6 5.5172 7.0298 -4.2429 22 6 6.4790 6.4756 -3.4268 23 6 6.3346 5.1621 -2.9719 24 6 7.3593 4.5631 -2.0981 25 8 7.2302 3.4206 -1.7052 26 8 8.4393 5.2827 -1.7351 27 6 9.4078 4.6285 -0.8735 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6765 1.9564 -0.8900 35 1 6.5352 -0.6670 0.5164 36 1 3.6793 0.8702 -2.0108 37 1 5.2176 0.9900 -1.1235 38 1 6.6160 1.7889 -3.3780 39 1 4.9795 1.1084 -3.5418 40 1 5.5886 2.2627 -4.7522 41 1 3.3806 4.4235 -4.4716 42 1 3.6567 6.7347 -5.2556 43 1 5.6296 8.0454 -4.5926 44 1 7.3454 7.0542 -3.1421 45 1 9.8003 3.7435 -1.3743 46 1 10.2251 5.3166 -0.6575 47 1 8.9250 4.3344 0.0585 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000118004844.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:53 Heat of formation + Delta-G solvation = -72.805663 kcal Electronic energy + Delta-G solvation = -30542.766228 eV Core-core repulsion = 26498.581315 eV Total energy + Delta-G solvation = -4044.184914 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.99903 -40.79008 -39.42143 -37.68899 -37.43416 -36.26046 -34.63936 -32.69040 -32.60457 -31.47819 -28.97737 -28.60781 -27.48897 -27.36552 -25.14188 -24.38167 -23.32033 -22.25844 -21.75128 -20.47184 -19.05131 -18.73490 -18.29045 -17.85272 -17.51762 -17.31672 -17.03935 -16.61548 -16.09632 -15.90286 -15.78508 -15.30808 -15.05051 -14.78492 -14.64663 -14.50576 -14.42670 -14.01596 -13.86075 -13.45810 -13.42516 -13.32267 -13.19118 -13.10961 -12.87402 -12.78000 -12.62270 -12.41357 -12.29203 -12.22961 -12.00162 -11.89832 -11.82045 -11.59401 -11.36352 -10.79889 -10.59993 -10.09564 -9.87624 -9.74162 -8.66131 -7.93373 -5.45648 -0.39496 0.25207 1.31785 1.35335 1.45378 1.48308 1.63132 1.83793 2.13093 2.44640 2.69847 3.18851 3.61622 3.65512 3.85752 4.06862 4.08351 4.17234 4.20017 4.22657 4.25321 4.35969 4.36894 4.41563 4.47356 4.55583 4.58128 4.66868 4.74340 4.77032 4.86437 4.87684 4.91571 5.17092 5.18105 5.21146 5.25005 5.34347 5.37911 5.42476 5.44167 5.55804 5.66265 5.70295 6.02420 6.31248 6.43319 6.66234 7.03851 7.43968 7.77638 8.26220 9.05156 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.010239 B = 0.005338 C = 0.003895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2734.053639 B = 5244.253788 C = 7187.869389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.153 3.847 4 N -0.578 5.578 5 C -0.259 4.259 6 H 0.043 0.957 7 C -0.028 4.028 8 N -0.903 5.903 9 Si 0.944 3.056 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.292 1.292 13 C 0.138 3.862 14 C 0.504 3.496 15 O -0.577 6.577 16 N -0.581 5.581 17 C 0.092 3.908 18 C 0.181 3.819 19 C -0.136 4.136 20 C -0.063 4.063 21 C -0.123 4.123 22 C -0.058 4.058 23 C -0.158 4.158 24 C 0.490 3.510 25 O -0.517 6.517 26 O -0.356 6.356 27 C 0.034 3.966 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.045 0.955 32 H 0.036 0.964 33 H 0.033 0.967 34 H 0.041 0.959 35 H 0.254 0.746 36 H 0.070 0.930 37 H 0.108 0.892 38 H 0.042 0.958 39 H 0.082 0.918 40 H 0.097 0.903 41 H 0.140 0.860 42 H 0.173 0.827 43 H 0.176 0.824 44 H 0.155 0.845 45 H 0.062 0.938 46 H 0.145 0.855 47 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.408 11.571 -15.308 19.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.028 3.972 4 N -0.296 5.296 5 C -0.390 4.390 6 H 0.060 0.940 7 C -0.225 4.225 8 N -0.547 5.547 9 Si 0.772 3.228 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.218 1.218 13 C 0.007 3.993 14 C 0.294 3.706 15 O -0.455 6.455 16 N -0.313 5.313 17 C -0.050 4.050 18 C 0.090 3.910 19 C -0.155 4.155 20 C -0.081 4.081 21 C -0.141 4.141 22 C -0.077 4.077 23 C -0.161 4.161 24 C 0.335 3.665 25 O -0.406 6.406 26 O -0.273 6.273 27 C -0.059 4.059 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.051 0.949 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.088 0.912 37 H 0.125 0.875 38 H 0.060 0.940 39 H 0.101 0.899 40 H 0.115 0.885 41 H 0.158 0.842 42 H 0.191 0.809 43 H 0.193 0.807 44 H 0.173 0.827 45 H 0.081 0.919 46 H 0.163 0.837 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 1.280 11.531 -14.772 18.784 hybrid contribution 1.195 -0.380 1.344 1.838 sum 2.475 11.152 -13.428 17.630 Atomic orbital electron populations 1.21655 0.93991 1.01943 1.01851 1.21886 0.96227 0.98167 1.00416 1.20964 0.82896 0.94859 0.98458 1.43575 1.00976 1.83920 1.01159 1.19069 1.04018 1.25284 0.90614 0.93960 1.25518 1.01282 0.95457 1.00260 1.69973 1.23628 1.20933 1.40204 0.85647 0.79373 0.77629 0.80126 1.19728 1.21103 1.21806 1.20869 1.01606 0.89319 0.87482 1.23133 0.74900 0.94404 0.78180 1.90519 1.51144 1.48076 1.55747 1.45487 1.57348 1.05015 1.23466 1.21834 0.98960 0.88543 0.95619 1.18020 0.92942 0.85541 0.94459 1.21559 0.98229 0.97388 0.98307 1.21782 0.97793 0.91884 0.96636 1.21638 0.93113 1.01989 0.97329 1.21666 1.00233 0.91339 0.94419 1.19693 0.95424 0.97668 1.03297 1.21648 0.81528 0.84258 0.79031 1.90947 1.76695 1.19907 1.53058 1.86483 1.31861 1.45699 1.63251 1.23475 0.90451 0.99921 0.92083 0.92023 0.91871 0.92856 0.93569 0.94558 0.94861 0.94081 0.93672 0.91193 0.87521 0.93972 0.89950 0.88473 0.84248 0.80921 0.80674 0.82706 0.91930 0.83677 0.94394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.15 9.91 71.98 0.71 -3.44 16 2 C -0.13 -5.18 6.26 30.59 0.19 -4.99 16 3 C 0.15 7.18 5.69 86.38 0.49 7.67 16 4 N -0.58 -31.79 1.94 -706.35 -1.37 -33.16 16 5 C -0.26 -15.77 9.49 84.03 0.80 -14.97 16 6 H 0.04 2.66 7.92 -2.91 -0.02 2.63 16 7 C -0.03 -1.65 4.93 84.86 0.42 -1.23 16 8 N -0.90 -53.91 11.32 21.65 0.25 -53.67 16 9 Si 0.94 48.92 29.61 68.60 2.03 50.95 16 10 H -0.27 -13.31 7.11 99.48 0.71 -12.60 16 11 H -0.29 -14.48 7.11 99.48 0.71 -13.77 16 12 H -0.29 -15.55 7.11 99.48 0.71 -14.84 16 13 C 0.14 7.03 4.29 85.63 0.37 7.40 16 14 C 0.50 24.75 6.78 87.66 0.59 25.34 16 15 O -0.58 -32.58 16.40 -3.02 -0.05 -32.63 16 16 N -0.58 -22.93 1.52 -653.85 -0.99 -23.92 16 17 C 0.09 2.95 9.88 127.77 1.26 4.22 16 18 C 0.18 6.26 4.44 38.62 0.17 6.43 16 19 C -0.14 -3.51 9.96 22.36 0.22 -3.29 16 20 C -0.06 -1.10 10.03 22.30 0.22 -0.88 16 21 C -0.12 -2.04 10.02 22.24 0.22 -1.82 16 22 C -0.06 -1.36 9.61 22.53 0.22 -1.14 16 23 C -0.16 -5.31 5.89 -20.00 -0.12 -5.43 16 24 C 0.49 19.07 7.89 70.23 0.55 19.63 16 25 O -0.52 -24.45 12.91 19.81 0.26 -24.20 16 26 O -0.36 -11.44 9.82 -56.65 -0.56 -12.00 16 27 C 0.03 0.93 10.57 113.37 1.20 2.13 16 28 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.05 1.89 8.14 -2.39 -0.02 1.88 16 32 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.03 1.59 8.04 -2.39 -0.02 1.57 16 34 H 0.04 1.81 8.07 -2.39 -0.02 1.79 16 35 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 36 H 0.07 3.19 7.36 -2.38 -0.02 3.17 16 37 H 0.11 6.13 5.28 -2.39 -0.01 6.11 16 38 H 0.04 1.51 7.18 -2.39 -0.02 1.49 16 39 H 0.08 2.56 6.44 -2.39 -0.02 2.54 16 40 H 0.10 2.32 8.05 -2.39 -0.02 2.30 16 41 H 0.14 3.29 8.06 -2.91 -0.02 3.27 16 42 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 43 H 0.18 1.39 8.06 -2.91 -0.02 1.37 16 44 H 0.16 2.96 7.61 -2.91 -0.02 2.94 16 45 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 46 H 0.15 2.56 8.14 -2.39 -0.02 2.54 16 47 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 Total: -1.00 -83.83 394.04 8.05 -75.78 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: 0.96 Total: 17.20 kcal Atomic # 6 Polarization: 28.11 SS G_CDS: 7.53 Total: 35.64 kcal Atomic # 7 Polarization: -108.63 SS G_CDS: -2.12 Total: -110.75 kcal Atomic # 8 Polarization: -68.47 SS G_CDS: -0.35 Total: -68.82 kcal Atomic # 14 Polarization: 48.92 SS G_CDS: 2.03 Total: 50.95 kcal Total: -83.83 8.05 -75.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118004844.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.973 kcal (2) G-P(sol) polarization free energy of solvation -83.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds