Wall clock time and date at job start Tue Mar 31 2020 18:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47039 * 2 1 4 4 N 1.46499 * 109.46938 * 179.97438 * 3 2 1 5 5 C 1.37094 * 120.00022 * 264.76515 * 4 3 2 6 6 H 1.07997 * 120.00762 * 138.85774 * 5 4 3 7 7 C 1.38952 * 119.99755 * 318.85890 * 5 4 3 8 8 N 1.31413 * 120.00044 * 341.82241 * 7 5 4 9 9 Si 1.86806 * 119.99963 * 161.82723 * 7 5 4 10 10 H 1.48500 * 109.47111 * 89.99891 * 9 7 5 11 11 H 1.48505 * 109.46648 * 209.99822 * 9 7 5 12 12 H 1.48494 * 109.46832 * 329.99915 * 9 7 5 13 13 C 1.34776 * 120.00229 * 84.76856 * 4 3 2 14 14 O 1.21291 * 120.00335 * 179.97438 * 13 4 3 15 15 C 1.50706 * 120.00169 * 359.97438 * 13 4 3 16 16 C 1.50699 * 109.47175 * 180.02562 * 15 13 4 17 17 C 1.38285 * 119.96953 * 269.97605 * 16 15 13 18 18 C 1.38244 * 120.10755 * 180.02562 * 17 16 15 19 19 C 1.38163 * 120.05747 * 359.68337 * 18 17 16 20 20 C 1.38712 * 119.94382 * 0.61420 * 19 18 17 21 21 O 1.35896 * 120.06037 * 179.68399 * 20 19 18 22 22 C 1.42901 * 116.99788 * 359.72173 * 21 20 19 23 23 C 1.50700 * 109.47283 * 180.02562 * 22 21 20 24 24 O 1.21283 * 119.99979 * 0.02562 * 23 22 21 25 25 N 1.34782 * 119.99974 * 179.97438 * 23 22 21 26 26 C 1.46498 * 119.99685 * 180.02562 * 25 23 22 27 27 C 1.38118 * 119.97102 * 90.00547 * 16 15 13 28 28 H 1.09000 * 109.47440 * 300.00604 * 1 2 3 29 29 H 1.09003 * 109.47433 * 60.00614 * 1 2 3 30 30 H 1.09000 * 109.47235 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47432 * 239.99951 * 2 1 3 32 32 H 1.08997 * 109.47200 * 119.99752 * 2 1 3 33 33 H 1.09000 * 109.47498 * 59.99431 * 3 2 1 34 34 H 1.09004 * 109.46512 * 299.99399 * 3 2 1 35 35 H 0.97006 * 120.00155 * 179.97438 * 8 7 5 36 36 H 1.09008 * 109.46768 * 60.00032 * 15 13 4 37 37 H 1.09002 * 109.47007 * 300.00488 * 15 13 4 38 38 H 1.07996 * 119.94919 * 0.02562 * 17 16 15 39 39 H 1.08004 * 119.97223 * 179.97438 * 18 17 16 40 40 H 1.08002 * 120.02879 * 180.29917 * 19 18 17 41 41 H 1.09007 * 109.47120 * 60.00336 * 22 21 20 42 42 H 1.09005 * 109.47302 * 300.00751 * 22 21 20 43 43 H 0.96993 * 119.99873 * 0.02562 * 25 23 22 44 44 H 1.09007 * 109.47031 * 60.00372 * 26 25 23 45 45 H 1.08998 * 109.47061 * 180.02562 * 26 25 23 46 46 H 1.09005 * 109.47592 * 300.00664 * 26 25 23 47 47 H 1.08005 * 120.02864 * 0.02562 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1899 1.5510 1.1832 6 1 5.0698 0.9488 1.3549 7 6 3.7520 2.4358 2.1610 8 7 2.9268 3.4085 1.8450 9 14 4.3365 2.2428 3.9248 10 1 5.5810 3.0286 4.1226 11 1 3.2863 2.7371 4.8511 12 1 4.6069 0.8093 4.2025 13 6 4.1794 1.3359 -1.1614 14 8 5.3923 1.3364 -1.1609 15 6 3.4265 1.2161 -2.4614 16 6 4.4063 1.1110 -3.6015 17 6 4.8551 2.2557 -4.2344 18 6 5.7536 2.1625 -5.2810 19 6 6.2103 0.9253 -5.6928 20 6 5.7569 -0.2247 -5.0637 21 8 6.1997 -1.4432 -5.4711 22 6 7.1273 -1.4663 -6.5578 23 6 7.5026 -2.8925 -6.8679 24 8 7.0225 -3.7999 -6.2222 25 7 8.3710 -3.1596 -7.8635 26 6 8.7353 -4.5461 -8.1652 27 6 4.8548 -0.1286 -4.0138 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9565 0.8899 34 1 1.6766 1.9563 -0.8901 35 1 2.6208 4.0260 2.5277 36 1 2.7995 2.0970 -2.6006 37 1 2.8001 0.3244 -2.4376 38 1 4.5033 3.2240 -3.9106 39 1 6.1024 3.0579 -5.7740 40 1 6.9159 0.8534 -6.5073 41 1 8.0216 -0.9062 -6.2841 42 1 6.6691 -1.0122 -7.4365 43 1 8.7546 -2.4339 -8.3801 44 1 7.8407 -5.1056 -8.4389 45 1 9.4430 -4.5637 -8.9940 46 1 9.1936 -5.0008 -7.2869 47 1 4.5032 -1.0223 -3.5197 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121621567.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:49 Heat of formation + Delta-G solvation = -106.039162 kcal Electronic energy + Delta-G solvation = -28248.790486 eV Core-core repulsion = 24203.164460 eV Total energy + Delta-G solvation = -4045.626026 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.49181 -40.74137 -40.12166 -38.35336 -37.01244 -35.72390 -34.64822 -33.38590 -32.92647 -31.75285 -29.91032 -29.00939 -27.36334 -26.77834 -26.00692 -23.55133 -22.85784 -22.40894 -21.64116 -20.66416 -18.99565 -18.77247 -18.38531 -17.77775 -17.42664 -17.22898 -16.92829 -16.72799 -16.43108 -16.07704 -15.78808 -15.63951 -15.36550 -15.00167 -14.81092 -14.56419 -14.24246 -14.04562 -13.93668 -13.64250 -13.41770 -13.33147 -13.18807 -13.11140 -12.99830 -12.76175 -12.65587 -12.42121 -12.25044 -12.10333 -11.98633 -11.97058 -11.82379 -11.48523 -11.06828 -10.87100 -10.40123 -10.24543 -9.72058 -9.36299 -9.13950 -8.32739 -6.08785 0.38819 0.52130 1.36581 1.39453 1.42890 1.52055 1.57133 2.08495 2.29884 2.66390 2.78013 3.01391 3.23216 3.61636 3.81329 3.90686 4.04308 4.10850 4.11445 4.16848 4.21037 4.28989 4.37752 4.44740 4.46155 4.52090 4.59527 4.61990 4.66133 4.79324 4.83275 4.93658 4.99899 5.10226 5.16073 5.30283 5.30477 5.31661 5.41211 5.47587 5.48623 5.59780 5.70901 5.81163 6.25487 6.34696 6.51202 6.58127 7.13553 7.21178 7.48580 8.10992 8.70757 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015153 B = 0.002366 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.337403 B =11832.417771 C =11845.783115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.135 4.135 3 C 0.111 3.889 4 N -0.457 5.457 5 C -0.340 4.340 6 H 0.056 0.944 7 C 0.005 3.995 8 N -0.889 5.889 9 Si 0.978 3.022 10 H -0.279 1.279 11 H -0.265 1.265 12 H -0.270 1.270 13 C 0.455 3.545 14 O -0.621 6.621 15 C -0.090 4.090 16 C -0.026 4.026 17 C -0.159 4.159 18 C -0.075 4.075 19 C -0.207 4.207 20 C 0.118 3.882 21 O -0.323 6.323 22 C 0.035 3.965 23 C 0.508 3.492 24 O -0.578 6.578 25 N -0.712 5.712 26 C 0.083 3.917 27 C -0.163 4.163 28 H 0.051 0.949 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.043 0.957 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.273 0.727 36 H 0.110 0.890 37 H 0.106 0.894 38 H 0.124 0.876 39 H 0.160 0.840 40 H 0.169 0.831 41 H 0.120 0.880 42 H 0.131 0.869 43 H 0.425 0.575 44 H 0.050 0.950 45 H 0.120 0.880 46 H 0.046 0.954 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.864 -5.642 -22.485 23.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.173 4.173 3 C -0.012 4.012 4 N -0.176 5.176 5 C -0.468 4.468 6 H 0.074 0.926 7 C -0.197 4.197 8 N -0.526 5.526 9 Si 0.801 3.199 10 H -0.205 1.205 11 H -0.189 1.189 12 H -0.194 1.194 13 C 0.244 3.756 14 O -0.507 6.507 15 C -0.130 4.130 16 C -0.027 4.027 17 C -0.178 4.178 18 C -0.093 4.093 19 C -0.225 4.225 20 C 0.073 3.927 21 O -0.237 6.237 22 C -0.043 4.043 23 C 0.294 3.706 24 O -0.457 6.457 25 N -0.367 5.367 26 C -0.060 4.060 27 C -0.182 4.182 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.128 0.872 37 H 0.124 0.876 38 H 0.142 0.858 39 H 0.178 0.822 40 H 0.186 0.814 41 H 0.138 0.862 42 H 0.148 0.852 43 H 0.263 0.737 44 H 0.068 0.932 45 H 0.138 0.862 46 H 0.065 0.935 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.953 -6.334 -21.847 23.088 hybrid contribution 0.526 0.293 1.110 1.263 sum 4.479 -6.041 -20.737 22.058 Atomic orbital electron populations 1.21630 0.93162 1.02370 1.02317 1.21911 0.97542 0.96771 1.01114 1.21630 0.80093 0.96386 1.03137 1.43721 1.05930 1.63518 1.04399 1.19262 1.12284 1.22230 0.93015 0.92641 1.26107 0.97022 0.92853 1.03748 1.69982 1.33858 1.13599 1.35211 0.85194 0.78184 0.78690 0.77818 1.20460 1.18931 1.19420 1.21093 0.87907 0.80562 0.86004 1.90492 1.16313 1.56202 1.87719 1.20692 0.97278 1.05341 0.89693 1.19258 0.96373 0.92923 0.94119 1.21165 1.00681 0.97676 0.98238 1.21252 0.94582 0.98296 0.95158 1.21511 1.05350 0.91191 1.04436 1.18954 0.94753 0.84338 0.94660 1.86098 1.59795 1.27234 1.50565 1.22771 0.95245 0.94807 0.91475 1.20595 0.79129 0.90608 0.80278 1.90756 1.54721 1.48872 1.51301 1.45498 1.45334 1.11122 1.34722 1.21723 1.01121 0.81122 1.02037 1.20252 1.01465 0.97719 0.98760 0.93022 0.91346 0.91343 0.92381 0.93812 0.90138 0.91491 0.91742 0.87150 0.87575 0.85783 0.82231 0.81387 0.86187 0.85190 0.73723 0.93158 0.86188 0.93521 0.87157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.76 9.91 71.98 0.71 -3.05 16 2 C -0.13 -4.87 6.17 30.59 0.19 -4.69 16 3 C 0.11 4.83 4.69 86.38 0.41 5.23 16 4 N -0.46 -24.16 2.50 -635.53 -1.59 -25.75 16 5 C -0.34 -19.95 8.84 84.04 0.74 -19.21 16 6 H 0.06 3.51 7.82 -2.91 -0.02 3.49 16 7 C 0.01 0.29 4.95 84.93 0.42 0.71 16 8 N -0.89 -48.79 11.61 21.66 0.25 -48.54 16 9 Si 0.98 43.71 29.59 68.60 2.03 45.74 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 11 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 12 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 13 C 0.45 23.48 7.59 87.66 0.66 24.14 16 14 O -0.62 -37.51 15.95 -3.06 -0.05 -37.56 16 15 C -0.09 -3.49 4.44 29.10 0.13 -3.36 16 16 C -0.03 -0.97 4.37 -19.88 -0.09 -1.06 16 17 C -0.16 -5.16 9.70 22.28 0.22 -4.94 16 18 C -0.08 -1.88 10.04 22.25 0.22 -1.66 16 19 C -0.21 -4.86 9.04 22.37 0.20 -4.66 16 20 C 0.12 3.67 6.69 22.51 0.15 3.82 16 21 O -0.32 -9.84 9.67 -73.34 -0.71 -10.55 16 22 C 0.03 0.61 5.22 71.24 0.37 0.98 16 23 C 0.51 10.79 7.91 87.66 0.69 11.49 16 24 O -0.58 -19.56 16.50 16.00 0.26 -19.30 16 25 N -0.71 -7.78 5.71 -484.50 -2.77 -10.54 16 26 C 0.08 0.83 10.70 127.77 1.37 2.20 16 27 C -0.16 -6.04 9.64 22.37 0.22 -5.82 16 28 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.06 2.00 6.59 -2.39 -0.02 1.98 16 32 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.08 3.90 5.76 -2.39 -0.01 3.89 16 34 H 0.07 2.60 6.66 -2.38 -0.02 2.58 16 35 H 0.27 13.95 8.31 -92.70 -0.77 13.18 16 36 H 0.11 3.78 7.36 -2.38 -0.02 3.76 16 37 H 0.11 3.64 6.48 -2.39 -0.02 3.63 16 38 H 0.12 3.83 8.06 -2.91 -0.02 3.81 16 39 H 0.16 2.74 8.06 -2.91 -0.02 2.71 16 40 H 0.17 2.25 6.30 -2.91 -0.02 2.23 16 41 H 0.12 1.42 7.65 -2.38 -0.02 1.40 16 42 H 0.13 1.24 7.67 -2.38 -0.02 1.22 16 43 H 0.43 0.85 8.83 -92.71 -0.82 0.03 16 44 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 45 H 0.12 0.19 8.14 -2.39 -0.02 0.17 16 46 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 47 H 0.11 4.26 8.06 -2.91 -0.02 4.24 16 Total: -1.00 -87.99 393.33 4.22 -83.77 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: 0.17 Total: 22.61 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: 6.62 Total: 0.13 kcal Atomic # 7 Polarization: -80.73 SS G_CDS: -4.11 Total: -84.84 kcal Atomic # 8 Polarization: -66.92 SS G_CDS: -0.49 Total: -67.41 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -87.99 4.22 -83.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121621567.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.266 kcal (2) G-P(sol) polarization free energy of solvation -87.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds