Wall clock time and date at job start Tue Mar 31 2020 17:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47507 * 2 1 4 4 H 1.08994 * 109.51257 * 55.24223 * 3 2 1 5 5 C 1.53248 * 109.48728 * 295.18423 * 3 2 1 6 6 N 1.47084 * 108.51488 * 186.20743 * 5 3 2 7 7 S 1.65600 * 120.87865 * 231.15874 * 6 5 3 8 8 O 1.42101 * 104.27708 * 26.09835 * 7 6 5 9 9 O 1.42098 * 104.27407 * 153.95288 * 7 6 5 10 10 C 1.81403 * 104.45057 * 270.02412 * 7 6 5 11 11 C 1.52997 * 109.47013 * 180.02562 * 10 7 6 12 12 C 1.50703 * 109.47186 * 180.02562 * 11 10 7 13 13 H 1.07996 * 119.99690 * 0.02562 * 12 11 10 14 14 C 1.37873 * 120.00027 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00214 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99901 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47087 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47187 * 120.00018 * 16 14 12 19 19 H 1.48501 * 109.47203 * 240.00224 * 16 14 12 20 20 C 1.47081 * 118.23587 * 51.18503 * 6 5 3 21 21 C 1.53232 * 108.52265 * 308.81015 * 20 6 5 22 22 N 1.46889 * 109.49683 * 175.31792 * 3 2 1 23 23 C 1.46905 * 111.00005 * 307.21184 * 22 3 2 24 24 C 1.52998 * 109.47029 * 309.11601 * 23 22 3 25 25 H 1.09002 * 109.47155 * 54.60432 * 24 23 22 26 26 C 1.52994 * 109.47318 * 174.60354 * 24 23 22 27 27 O 1.42905 * 109.47215 * 294.60646 * 24 23 22 28 28 H 1.09006 * 109.47013 * 295.94574 * 1 2 3 29 29 H 1.09003 * 109.47421 * 55.94403 * 1 2 3 30 30 H 1.09002 * 109.47248 * 175.94403 * 1 2 3 31 31 H 1.09002 * 109.47009 * 239.99926 * 2 1 3 32 32 H 1.09002 * 109.47070 * 119.99870 * 2 1 3 33 33 H 1.08998 * 109.63072 * 66.49711 * 5 3 2 34 34 H 1.08995 * 109.78620 * 306.01058 * 5 3 2 35 35 H 1.08994 * 109.47070 * 300.00572 * 10 7 6 36 36 H 1.09005 * 109.46747 * 60.00314 * 10 7 6 37 37 H 1.09002 * 109.47047 * 300.00251 * 11 10 7 38 38 H 1.08996 * 109.47553 * 60.00088 * 11 10 7 39 39 H 0.96997 * 120.00218 * 180.02562 * 15 14 12 40 40 H 1.09008 * 109.62049 * 189.09967 * 20 6 5 41 41 H 1.08999 * 109.79191 * 68.62121 * 20 6 5 42 42 H 1.08996 * 109.49473 * 293.87345 * 21 20 6 43 43 H 1.09000 * 109.49272 * 173.79245 * 21 20 6 44 44 H 1.09002 * 109.47128 * 69.11131 * 23 22 3 45 45 H 1.09000 * 109.47279 * 189.11567 * 23 22 3 46 46 H 1.09002 * 109.47159 * 299.99914 * 26 24 23 47 47 H 1.09002 * 109.46944 * 59.99949 * 26 24 23 48 48 H 1.08996 * 109.47422 * 179.97438 * 26 24 23 49 49 H 0.96698 * 114.00012 * 180.02562 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6092 1.9810 0.8440 5 6 1.6309 2.1294 -1.3074 6 7 2.2562 3.4600 -1.3514 7 16 1.3544 4.8129 -1.6654 8 8 0.0444 4.4683 -1.2360 9 8 2.0757 5.8671 -1.0429 10 6 1.4083 4.9840 -3.4706 11 6 0.6017 6.2143 -3.8906 12 6 0.6459 6.3561 -5.3903 13 1 1.1941 5.6400 -5.9844 14 6 -0.0135 7.4000 -6.0038 15 7 -0.6815 8.2718 -5.2803 16 14 0.0419 7.5761 -7.8626 17 1 0.8533 6.4745 -8.4402 18 1 -1.3380 7.5119 -8.4073 19 1 0.6542 8.8814 -8.2182 20 6 3.7038 3.5569 -1.1098 21 6 4.0312 2.8138 0.1897 22 7 3.5046 1.4446 0.1130 23 6 3.9449 0.6460 1.2647 24 6 3.1790 1.0868 2.5137 25 1 2.1075 1.0293 2.3221 26 6 3.5380 0.1678 3.6830 27 8 3.5331 2.4325 2.8394 28 1 -0.3633 0.4496 0.9241 29 1 -0.3634 0.5755 -0.8514 30 1 -0.3634 -1.0251 -0.0727 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 0.5464 2.2331 -1.3427 34 1 1.9700 1.5371 -2.1572 35 1 2.4427 5.1003 -3.7938 36 1 0.9811 4.0939 -3.9327 37 1 -0.4328 6.0983 -3.5672 38 1 1.0291 7.1042 -3.4284 39 1 -1.1457 9.0060 -5.7120 40 1 3.9897 4.6045 -1.0146 41 1 4.2475 3.1029 -1.9382 42 1 3.5727 3.3332 1.0312 43 1 5.1120 2.7807 0.3274 44 1 3.7488 -0.4088 1.0718 45 1 5.0132 0.7940 1.4225 46 1 3.2679 -0.8586 3.4346 47 1 4.6095 0.2253 3.8746 48 1 2.9927 0.4821 4.5729 49 1 3.0844 2.7786 3.6229 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122745031.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:06 Heat of formation + Delta-G solvation = -122.596561 kcal Electronic energy + Delta-G solvation = -28866.466539 eV Core-core repulsion = 24955.566481 eV Total energy + Delta-G solvation = -3910.900058 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.08855 -37.35206 -36.63415 -35.42030 -34.83275 -33.86379 -33.82995 -31.48748 -31.12832 -29.58852 -27.47105 -25.55901 -24.85856 -24.23813 -22.09561 -21.84176 -21.38163 -19.64172 -18.34709 -17.79491 -17.57629 -16.57919 -16.09773 -15.86152 -15.68162 -15.39509 -14.85258 -14.75295 -14.53512 -14.21827 -13.96976 -13.84448 -13.53599 -13.33198 -13.01619 -12.78479 -12.59351 -12.50498 -12.28626 -12.04007 -11.96316 -11.72717 -11.71900 -11.64067 -11.54050 -11.48373 -11.12875 -11.07920 -10.99514 -10.93512 -10.79342 -10.44548 -10.36667 -10.35510 -10.15577 -9.74174 -9.30265 -8.80332 -8.49313 -8.23703 -6.11064 -4.16424 0.79634 3.05310 3.26389 3.33574 3.37315 3.64895 3.96578 4.32923 4.41590 4.45148 4.55703 4.59989 4.72837 4.75702 4.84091 4.94242 5.05775 5.12615 5.23881 5.24290 5.27840 5.32609 5.35833 5.47815 5.53719 5.54618 5.58045 5.65822 5.67483 5.73191 5.78250 5.80967 5.84454 5.85150 6.04808 6.11979 6.16195 6.25602 6.52426 6.72418 6.95282 6.99349 7.31911 7.32086 7.38044 7.82449 8.19516 8.87354 9.48315 11.00063 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023503 B = 0.002849 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.036336 B = 9824.788323 C =10154.827499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.120 4.120 3 C 0.071 3.929 4 H 0.052 0.948 5 C 0.127 3.873 6 N -1.007 6.007 7 S 2.589 3.411 8 O -0.966 6.966 9 O -0.964 6.964 10 C -0.589 4.589 11 C 0.028 3.972 12 C -0.518 4.518 13 H 0.062 0.938 14 C 0.057 3.943 15 N -0.891 5.891 16 Si 0.900 3.100 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.282 1.282 20 C 0.120 3.880 21 C 0.043 3.957 22 N -0.527 5.527 23 C 0.061 3.939 24 C 0.057 3.943 25 H 0.061 0.939 26 C -0.183 4.183 27 O -0.559 6.559 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.033 0.967 38 H 0.033 0.967 39 H 0.264 0.736 40 H 0.096 0.904 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.079 0.921 44 H 0.091 0.909 45 H 0.080 0.920 46 H 0.065 0.935 47 H 0.063 0.937 48 H 0.056 0.944 49 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.671 -19.374 15.410 26.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.159 4.159 3 C -0.039 4.039 4 H 0.070 0.930 5 C 0.001 3.999 6 N -0.844 5.844 7 S 2.689 3.311 8 O -0.956 6.956 9 O -0.955 6.955 10 C -0.722 4.722 11 C -0.011 4.011 12 C -0.558 4.558 13 H 0.080 0.920 14 C -0.145 4.145 15 N -0.529 5.529 16 Si 0.727 3.273 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.006 4.006 21 C -0.086 4.086 22 N -0.250 5.250 23 C -0.067 4.067 24 C -0.004 4.004 25 H 0.079 0.921 26 C -0.241 4.241 27 O -0.365 6.365 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.115 0.885 34 H 0.091 0.909 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.051 0.949 38 H 0.051 0.949 39 H 0.074 0.926 40 H 0.114 0.886 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.097 0.903 44 H 0.109 0.891 45 H 0.099 0.901 46 H 0.084 0.916 47 H 0.082 0.918 48 H 0.075 0.925 49 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 8.717 -18.958 15.111 25.763 hybrid contribution -0.451 0.276 -0.299 0.607 sum 8.267 -18.682 14.812 25.234 Atomic orbital electron populations 1.21846 0.95184 1.01911 1.02602 1.21676 0.96046 0.95375 1.02787 1.22023 0.87796 0.96132 0.97905 0.93031 1.21572 0.98337 0.82797 0.97162 1.57982 1.18119 1.21395 1.86863 1.05692 0.73487 0.72701 0.79246 1.93515 1.38351 1.82676 1.81094 1.93524 1.72944 1.54410 1.74573 1.30493 1.10192 1.10219 1.21321 1.18967 0.94475 0.88746 0.98953 1.21050 1.32712 1.11403 0.90633 0.91981 1.25074 0.95072 0.95597 0.98798 1.69965 1.32747 1.14645 1.35562 0.86415 0.77902 0.78114 0.84872 1.19628 1.20802 1.20788 1.21547 0.79939 1.01586 0.97479 1.22566 1.00119 0.88182 0.97695 1.62093 1.09699 1.13513 1.39647 1.22356 0.99929 0.98200 0.86249 1.22751 0.99384 0.82486 0.95744 0.92108 1.22456 1.02635 1.00391 0.98596 1.86629 1.71299 1.28042 1.50523 0.92783 0.91751 0.92420 0.90742 0.91692 0.88503 0.90934 0.86254 0.86307 0.94920 0.94896 0.92598 0.88587 0.91194 0.91330 0.90260 0.89118 0.90148 0.91622 0.91778 0.92489 0.77951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 9.76 37.15 0.36 -0.96 16 2 C -0.12 -1.01 4.77 -26.73 -0.13 -1.14 16 3 C 0.07 0.78 1.40 -67.59 -0.09 0.69 16 4 H 0.05 0.65 6.55 -51.93 -0.34 0.31 16 5 C 0.13 1.61 5.49 -3.60 -0.02 1.59 16 6 N -1.01 -14.73 3.26 -113.23 -0.37 -15.09 16 7 S 2.59 48.54 5.47 -107.50 -0.59 47.96 16 8 O -0.97 -20.34 16.61 -57.54 -0.96 -21.29 16 9 O -0.96 -20.57 16.60 -57.54 -0.96 -21.52 16 10 C -0.59 -11.66 6.12 37.16 0.23 -11.43 16 11 C 0.03 0.72 4.98 -27.88 -0.14 0.58 16 12 C -0.52 -14.53 9.11 -34.44 -0.31 -14.85 16 13 H 0.06 1.65 7.74 -52.49 -0.41 1.25 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.89 -26.75 13.29 55.43 0.74 -26.02 16 16 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 17 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 C 0.12 1.55 6.62 -3.61 -0.02 1.53 16 21 C 0.04 0.51 5.00 -3.70 -0.02 0.49 16 22 N -0.53 -5.55 4.68 -226.35 -1.06 -6.60 16 23 C 0.06 0.51 4.60 -3.82 -0.02 0.49 16 24 C 0.06 0.45 2.80 -26.74 -0.07 0.37 16 25 H 0.06 0.52 5.43 -51.93 -0.28 0.24 16 26 C -0.18 -1.08 9.53 37.15 0.35 -0.73 16 27 O -0.56 -5.20 10.39 -35.23 -0.37 -5.57 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.60 6.53 -51.93 -0.34 0.26 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.47 5.54 -51.93 -0.29 0.18 16 33 H 0.10 1.28 5.54 -51.93 -0.29 0.99 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.12 2.14 8.14 -51.93 -0.42 1.72 16 36 H 0.12 2.12 8.14 -51.92 -0.42 1.70 16 37 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 40 H 0.10 1.29 6.87 -51.92 -0.36 0.94 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.07 0.93 5.78 -51.93 -0.30 0.63 16 43 H 0.08 0.84 7.95 -51.93 -0.41 0.42 16 44 H 0.09 0.63 6.69 -51.93 -0.35 0.28 16 45 H 0.08 0.68 7.90 -51.93 -0.41 0.27 16 46 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 49 H 0.37 2.32 9.08 45.56 0.41 2.73 16 LS Contribution 384.41 15.07 5.79 5.79 Total: -1.00 -35.12 384.41 -10.33 -45.45 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -7.56 Total: 2.36 kcal Atomic # 6 Polarization: -21.85 SS G_CDS: 0.02 Total: -21.83 kcal Atomic # 7 Polarization: -47.02 SS G_CDS: -0.69 Total: -47.71 kcal Atomic # 8 Polarization: -46.10 SS G_CDS: -2.28 Total: -48.38 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: 48.54 SS G_CDS: -0.59 Total: 47.96 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.12 -10.33 -45.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122745031.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.148 kcal (2) G-P(sol) polarization free energy of solvation -35.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds