Wall clock time and date at job start Tue Mar 31 2020 17:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47507 * 2 1 4 4 H 1.08994 * 109.51257 * 55.24223 * 3 2 1 5 5 C 1.53248 * 109.48728 * 295.18423 * 3 2 1 6 6 N 1.47084 * 108.51488 * 186.20743 * 5 3 2 7 7 S 1.65600 * 120.87865 * 231.15874 * 6 5 3 8 8 O 1.42101 * 104.27708 * 26.09835 * 7 6 5 9 9 O 1.42098 * 104.27407 * 153.95288 * 7 6 5 10 10 C 1.81403 * 104.45057 * 270.02412 * 7 6 5 11 11 C 1.52997 * 109.47013 * 180.02562 * 10 7 6 12 12 C 1.50703 * 109.47186 * 180.02562 * 11 10 7 13 13 H 1.07996 * 119.99690 * 0.02562 * 12 11 10 14 14 C 1.37873 * 120.00027 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00214 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99901 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47087 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47187 * 120.00018 * 16 14 12 19 19 H 1.48501 * 109.47203 * 240.00224 * 16 14 12 20 20 C 1.47081 * 118.23587 * 51.18503 * 6 5 3 21 21 C 1.53232 * 108.52265 * 308.81015 * 20 6 5 22 22 N 1.46889 * 109.49683 * 175.31792 * 3 2 1 23 23 C 1.46905 * 111.00005 * 307.21184 * 22 3 2 24 24 C 1.52998 * 109.47029 * 309.11601 * 23 22 3 25 25 H 1.09002 * 109.47155 * 54.60432 * 24 23 22 26 26 C 1.52994 * 109.47318 * 174.60354 * 24 23 22 27 27 O 1.42905 * 109.47215 * 294.60646 * 24 23 22 28 28 H 1.09006 * 109.47013 * 295.94574 * 1 2 3 29 29 H 1.09003 * 109.47421 * 55.94403 * 1 2 3 30 30 H 1.09002 * 109.47248 * 175.94403 * 1 2 3 31 31 H 1.09002 * 109.47009 * 239.99926 * 2 1 3 32 32 H 1.09002 * 109.47070 * 119.99870 * 2 1 3 33 33 H 1.08998 * 109.63072 * 66.49711 * 5 3 2 34 34 H 1.08995 * 109.78620 * 306.01058 * 5 3 2 35 35 H 1.08994 * 109.47070 * 300.00572 * 10 7 6 36 36 H 1.09005 * 109.46747 * 60.00314 * 10 7 6 37 37 H 1.09002 * 109.47047 * 300.00251 * 11 10 7 38 38 H 1.08996 * 109.47553 * 60.00088 * 11 10 7 39 39 H 0.96997 * 120.00218 * 180.02562 * 15 14 12 40 40 H 1.09008 * 109.62049 * 189.09967 * 20 6 5 41 41 H 1.08999 * 109.79191 * 68.62121 * 20 6 5 42 42 H 1.08996 * 109.49473 * 293.87345 * 21 20 6 43 43 H 1.09000 * 109.49272 * 173.79245 * 21 20 6 44 44 H 1.09002 * 109.47128 * 69.11131 * 23 22 3 45 45 H 1.09000 * 109.47279 * 189.11567 * 23 22 3 46 46 H 1.09002 * 109.47159 * 299.99914 * 26 24 23 47 47 H 1.09002 * 109.46944 * 59.99949 * 26 24 23 48 48 H 1.08996 * 109.47422 * 179.97438 * 26 24 23 49 49 H 0.96698 * 114.00012 * 180.02562 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6092 1.9810 0.8440 5 6 1.6309 2.1294 -1.3074 6 7 2.2562 3.4600 -1.3514 7 16 1.3544 4.8129 -1.6654 8 8 0.0444 4.4683 -1.2360 9 8 2.0757 5.8671 -1.0429 10 6 1.4083 4.9840 -3.4706 11 6 0.6017 6.2143 -3.8906 12 6 0.6459 6.3561 -5.3903 13 1 1.1941 5.6400 -5.9844 14 6 -0.0135 7.4000 -6.0038 15 7 -0.6815 8.2718 -5.2803 16 14 0.0419 7.5761 -7.8626 17 1 0.8533 6.4745 -8.4402 18 1 -1.3380 7.5119 -8.4073 19 1 0.6542 8.8814 -8.2182 20 6 3.7038 3.5569 -1.1098 21 6 4.0312 2.8138 0.1897 22 7 3.5046 1.4446 0.1130 23 6 3.9449 0.6460 1.2647 24 6 3.1790 1.0868 2.5137 25 1 2.1075 1.0293 2.3221 26 6 3.5380 0.1678 3.6830 27 8 3.5331 2.4325 2.8394 28 1 -0.3633 0.4496 0.9241 29 1 -0.3634 0.5755 -0.8514 30 1 -0.3634 -1.0251 -0.0727 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 0.5464 2.2331 -1.3427 34 1 1.9700 1.5371 -2.1572 35 1 2.4427 5.1003 -3.7938 36 1 0.9811 4.0939 -3.9327 37 1 -0.4328 6.0983 -3.5672 38 1 1.0291 7.1042 -3.4284 39 1 -1.1457 9.0060 -5.7120 40 1 3.9897 4.6045 -1.0146 41 1 4.2475 3.1029 -1.9382 42 1 3.5727 3.3332 1.0312 43 1 5.1120 2.7807 0.3274 44 1 3.7488 -0.4088 1.0718 45 1 5.0132 0.7940 1.4225 46 1 3.2679 -0.8586 3.4346 47 1 4.6095 0.2253 3.8746 48 1 2.9927 0.4821 4.5729 49 1 3.0844 2.7786 3.6229 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122745031.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:05 Heat of formation + Delta-G solvation = -151.007347 kcal Electronic energy + Delta-G solvation = -28867.698523 eV Core-core repulsion = 24955.566481 eV Total energy + Delta-G solvation = -3912.132042 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.90644 -38.26736 -38.12336 -37.04160 -35.91989 -35.77772 -34.62399 -33.14182 -32.15203 -30.45819 -28.30070 -27.56465 -25.70249 -25.08503 -23.55556 -22.77352 -22.55021 -20.56746 -19.69771 -19.07909 -18.47632 -18.41059 -17.30530 -17.09949 -16.74532 -16.57578 -16.49965 -15.97235 -15.61450 -15.20605 -15.14705 -14.66705 -14.62785 -14.49325 -14.31143 -13.83777 -13.73827 -13.53120 -13.35047 -13.29945 -13.23027 -13.04383 -12.96140 -12.80145 -12.79531 -12.63119 -12.57935 -12.28062 -12.18391 -12.11976 -12.05127 -11.89763 -11.74478 -11.57990 -11.32317 -11.14287 -10.81130 -10.67001 -10.01060 -9.10668 -8.27328 -6.41732 -0.74347 1.40296 1.41140 1.54657 1.69979 2.37297 2.80397 2.89675 3.05852 3.13710 3.36348 3.57348 3.86304 3.94990 4.01477 4.05620 4.12919 4.17281 4.19238 4.28529 4.35008 4.42899 4.44622 4.60666 4.62826 4.70214 4.72717 4.79191 4.87869 4.90273 4.94260 4.98410 5.03379 5.09510 5.16895 5.24199 5.24801 5.25338 5.29237 5.35063 5.46827 5.62945 5.66992 6.04535 6.12237 6.16360 6.71991 6.78956 7.28614 8.85287 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023503 B = 0.002849 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.036336 B = 9824.788323 C =10154.827499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.112 4.112 3 C 0.074 3.926 4 H 0.032 0.968 5 C 0.117 3.883 6 N -0.997 5.997 7 S 2.610 3.390 8 O -0.993 6.993 9 O -0.994 6.994 10 C -0.586 4.586 11 C 0.021 3.979 12 C -0.538 4.538 13 H 0.076 0.924 14 C -0.005 4.005 15 N -0.935 5.935 16 Si 0.976 3.024 17 H -0.255 1.255 18 H -0.277 1.277 19 H -0.277 1.277 20 C 0.113 3.887 21 C 0.047 3.953 22 N -0.525 5.525 23 C 0.059 3.941 24 C 0.056 3.944 25 H 0.054 0.946 26 C -0.175 4.175 27 O -0.579 6.579 28 H 0.047 0.953 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.140 0.860 36 H 0.140 0.860 37 H 0.006 0.994 38 H 0.005 0.995 39 H 0.268 0.732 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.049 0.951 43 H 0.094 0.906 44 H 0.111 0.889 45 H 0.082 0.918 46 H 0.078 0.922 47 H 0.062 0.938 48 H 0.060 0.940 49 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.096 -22.152 14.674 28.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.150 4.150 3 C -0.036 4.036 4 H 0.050 0.950 5 C -0.008 4.008 6 N -0.836 5.836 7 S 2.709 3.291 8 O -0.983 6.983 9 O -0.984 6.984 10 C -0.718 4.718 11 C -0.018 4.018 12 C -0.577 4.577 13 H 0.094 0.906 14 C -0.203 4.203 15 N -0.575 5.575 16 Si 0.799 3.201 17 H -0.179 1.179 18 H -0.202 1.202 19 H -0.203 1.203 20 C -0.012 4.012 21 C -0.083 4.083 22 N -0.248 5.248 23 C -0.069 4.069 24 C -0.004 4.004 25 H 0.071 0.929 26 C -0.233 4.233 27 O -0.387 6.387 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.113 0.887 35 H 0.158 0.842 36 H 0.159 0.841 37 H 0.024 0.976 38 H 0.023 0.977 39 H 0.077 0.923 40 H 0.104 0.896 41 H 0.112 0.888 42 H 0.067 0.933 43 H 0.112 0.888 44 H 0.129 0.871 45 H 0.100 0.900 46 H 0.097 0.903 47 H 0.081 0.919 48 H 0.079 0.921 49 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 10.143 -21.745 14.380 27.973 hybrid contribution -0.869 1.096 0.027 1.399 sum 9.274 -20.649 14.407 26.832 Atomic orbital electron populations 1.21862 0.95396 1.02695 1.01728 1.21638 0.95760 0.93553 1.04056 1.21991 0.88210 0.97402 0.95980 0.95044 1.21875 0.97932 0.81788 0.99213 1.57629 1.18776 1.20933 1.86288 1.04770 0.72929 0.72981 0.78400 1.93472 1.40303 1.83268 1.81294 1.93478 1.73465 1.56531 1.74958 1.30388 1.10431 1.08112 1.22881 1.18822 0.93844 0.90600 0.98511 1.21537 1.32675 1.11763 0.91743 0.90629 1.26144 0.94502 0.95171 1.04499 1.70110 1.33830 1.15476 1.38038 0.85238 0.78256 0.78557 0.78039 1.17903 1.20248 1.20287 1.21790 0.78617 1.01623 0.99137 1.22499 1.00863 0.88777 0.96116 1.62119 1.09127 1.12640 1.40866 1.22488 0.99995 0.98804 0.85614 1.22772 0.98830 0.82349 0.96466 0.92861 1.22380 1.02546 1.00562 0.97849 1.86591 1.71729 1.29042 1.51382 0.93416 0.93028 0.90702 0.89772 0.89977 0.89452 0.88748 0.84185 0.84139 0.97606 0.97673 0.92343 0.89601 0.88849 0.93325 0.88782 0.87086 0.90000 0.90276 0.91928 0.92085 0.76764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 9.76 71.98 0.70 -1.73 16 2 C -0.11 -1.60 4.77 30.59 0.15 -1.45 16 3 C 0.07 1.52 1.40 45.00 0.06 1.58 16 4 H 0.03 0.78 6.55 -2.39 -0.02 0.76 16 5 C 0.12 2.82 5.49 86.35 0.47 3.29 16 6 N -1.00 -28.51 3.26 -512.15 -1.67 -30.18 16 7 S 2.61 99.89 5.47 -56.49 -0.31 99.58 16 8 O -0.99 -43.16 16.61 -127.65 -2.12 -45.28 16 9 O -0.99 -43.80 16.60 -127.65 -2.12 -45.92 16 10 C -0.59 -23.22 6.12 71.98 0.44 -22.78 16 11 C 0.02 1.14 4.98 29.85 0.15 1.29 16 12 C -0.54 -30.40 9.11 25.60 0.23 -30.16 16 13 H 0.08 3.95 7.74 -2.91 -0.02 3.93 16 14 C 0.00 -0.28 5.46 84.65 0.46 0.18 16 15 N -0.93 -57.63 13.29 21.45 0.28 -57.35 16 16 Si 0.98 43.75 29.54 68.60 2.03 45.78 16 17 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 18 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 19 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 20 C 0.11 2.79 6.62 86.35 0.57 3.36 16 21 C 0.05 1.05 5.00 86.38 0.43 1.48 16 22 N -0.52 -9.93 4.68 -870.05 -4.07 -14.00 16 23 C 0.06 0.84 4.60 86.30 0.40 1.23 16 24 C 0.06 0.79 2.80 30.59 0.09 0.88 16 25 H 0.05 0.84 5.43 -2.39 -0.01 0.83 16 26 C -0.18 -1.68 9.53 71.98 0.69 -1.00 16 27 O -0.58 -10.43 10.39 -148.98 -1.55 -11.98 16 28 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 29 H 0.05 0.92 6.53 -2.39 -0.02 0.90 16 30 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.08 0.91 5.54 -2.39 -0.01 0.90 16 33 H 0.09 2.29 5.54 -2.39 -0.01 2.27 16 34 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.14 4.91 8.14 -2.39 -0.02 4.89 16 36 H 0.14 4.89 8.14 -2.39 -0.02 4.87 16 37 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 38 H 0.00 0.29 8.14 -2.39 -0.02 0.27 16 39 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 40 H 0.09 2.29 6.87 -2.38 -0.02 2.28 16 41 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.05 1.31 5.78 -2.39 -0.01 1.29 16 43 H 0.09 1.82 7.95 -2.39 -0.02 1.80 16 44 H 0.11 1.13 6.69 -2.39 -0.02 1.12 16 45 H 0.08 1.17 7.90 -2.39 -0.02 1.15 16 46 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 47 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 48 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 49 H 0.38 4.70 9.08 -74.06 -0.67 4.03 16 Total: -1.00 -77.31 384.41 -4.41 -81.72 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: 0.27 Total: 21.45 kcal Atomic # 6 Polarization: -48.67 SS G_CDS: 4.84 Total: -43.83 kcal Atomic # 7 Polarization: -96.07 SS G_CDS: -5.45 Total: -101.52 kcal Atomic # 8 Polarization: -97.39 SS G_CDS: -5.79 Total: -103.18 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 16 Polarization: 99.89 SS G_CDS: -0.31 Total: 99.58 kcal Total: -77.31 -4.41 -81.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122745031.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.283 kcal (2) G-P(sol) polarization free energy of solvation -77.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds