Wall clock time and date at job start Tue Mar 31 2020 17:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47594 * 2 1 4 4 H 1.08999 * 109.48717 * 301.15302 * 3 2 1 5 5 C 1.53233 * 109.49088 * 61.22953 * 3 2 1 6 6 N 1.47084 * 108.52068 * 173.79328 * 5 3 2 7 7 S 1.65599 * 120.88140 * 128.79432 * 6 5 3 8 8 O 1.42103 * 104.27797 * 26.09645 * 7 6 5 9 9 O 1.42106 * 104.27330 * 153.95054 * 7 6 5 10 10 C 1.81395 * 104.44977 * 270.02045 * 7 6 5 11 11 C 1.52994 * 109.47251 * 180.02562 * 10 7 6 12 12 C 1.50705 * 109.47310 * 180.02562 * 11 10 7 13 13 H 1.07997 * 120.00037 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99799 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00189 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99601 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47144 * 60.00263 * 16 14 12 18 18 H 1.48503 * 109.47082 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47324 * 300.00359 * 16 14 12 20 20 C 1.47077 * 118.23453 * 308.81545 * 6 5 3 21 21 C 1.53238 * 108.52174 * 51.18647 * 20 6 5 22 22 N 1.46896 * 109.49346 * 181.09967 * 3 2 1 23 23 C 1.46890 * 111.00344 * 52.78564 * 22 3 2 24 24 C 1.53000 * 109.47241 * 73.62938 * 23 22 3 25 25 H 1.09000 * 109.47282 * 53.64172 * 24 23 22 26 26 C 1.53004 * 109.47505 * 173.64273 * 24 23 22 27 27 O 1.42896 * 109.47089 * 293.64148 * 24 23 22 28 28 H 1.08999 * 109.47137 * 294.84279 * 1 2 3 29 29 H 1.08999 * 109.47310 * 174.83548 * 1 2 3 30 30 H 1.08999 * 109.46702 * 54.83786 * 1 2 3 31 31 H 1.09000 * 109.46805 * 120.00065 * 2 1 3 32 32 H 1.09001 * 109.47032 * 239.99347 * 2 1 3 33 33 H 1.09007 * 109.63379 * 293.49947 * 5 3 2 34 34 H 1.09001 * 109.63052 * 54.08528 * 5 3 2 35 35 H 1.09006 * 109.47193 * 300.00256 * 10 7 6 36 36 H 1.09002 * 109.47039 * 60.00084 * 10 7 6 37 37 H 1.09006 * 109.47145 * 300.00180 * 11 10 7 38 38 H 1.09001 * 109.47485 * 60.00415 * 11 10 7 39 39 H 0.97003 * 119.99674 * 179.97438 * 15 14 12 40 40 H 1.09004 * 109.62935 * 291.47485 * 20 6 5 41 41 H 1.09001 * 109.62687 * 170.89237 * 20 6 5 42 42 H 1.08999 * 109.49425 * 186.21035 * 21 20 6 43 43 H 1.08998 * 109.51970 * 66.14056 * 21 20 6 44 44 H 1.08994 * 109.47556 * 193.62783 * 23 22 3 45 45 H 1.09003 * 109.47231 * 313.63135 * 23 22 3 46 46 H 1.09000 * 109.46933 * 59.99685 * 26 24 23 47 47 H 1.08999 * 109.47535 * 179.97438 * 26 24 23 48 48 H 1.09004 * 109.47027 * 300.00475 * 26 24 23 49 49 H 0.96706 * 114.00301 * 180.02562 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6602 1.9625 -0.8794 5 6 1.5551 2.1563 1.2662 6 7 2.1775 3.4879 1.3193 7 16 1.2595 4.8466 1.5502 8 8 0.1135 4.3806 2.2495 9 8 2.1536 5.7764 2.1463 10 6 0.8104 5.3794 -0.1246 11 6 -0.0491 6.6426 -0.0447 12 6 -0.4228 7.0848 -1.4360 13 1 -0.0817 6.5211 -2.2917 14 6 -1.2009 8.2086 -1.6165 15 7 -1.6167 8.8949 -0.5745 16 14 -1.6635 8.7572 -3.3412 17 1 -2.4297 7.6783 -4.0150 18 1 -2.4978 9.9833 -3.2636 19 1 -0.4302 9.0465 -4.1161 20 6 3.6369 3.5806 1.1615 21 6 4.0399 2.8106 -0.1006 22 7 3.5088 1.4430 -0.0266 23 6 4.0157 0.6208 -1.1333 24 6 3.7947 1.3553 -2.4571 25 1 4.2307 2.3525 -2.3966 26 6 4.4622 0.5748 -3.5912 27 8 2.3931 1.4632 -2.7138 28 1 -0.3633 0.4317 0.9326 29 1 -0.3634 -1.0235 -0.0925 30 1 -0.3633 0.5918 -0.8402 31 1 1.8933 -0.5139 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 0.4704 2.2601 1.2354 34 1 1.8459 1.5809 2.1451 35 1 1.7157 5.5917 -0.6934 36 1 0.2479 4.5875 -0.6192 37 1 -0.9544 6.4306 0.5243 38 1 0.5137 7.4344 0.4497 39 1 -2.1639 9.6857 -0.7015 40 1 4.1278 3.1420 2.0304 41 1 3.9286 4.6260 1.0614 42 1 5.1269 2.7752 -0.1736 43 1 3.6326 3.3119 -0.9786 44 1 5.0810 0.4387 -0.9924 45 1 3.4838 -0.3305 -1.1524 46 1 4.0262 -0.4223 -3.6517 47 1 4.3044 1.0978 -4.5344 48 1 5.5314 0.4925 -3.3954 49 1 2.1783 1.9188 -3.5393 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122745168.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:09 Heat of formation + Delta-G solvation = -120.795108 kcal Electronic energy + Delta-G solvation = -29339.151994 eV Core-core repulsion = 25428.330054 eV Total energy + Delta-G solvation = -3910.821941 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.00187 -37.31284 -36.63168 -35.42068 -34.66518 -33.99231 -33.87809 -31.30296 -31.14636 -29.58695 -27.44198 -25.59487 -24.82816 -24.26228 -22.20153 -21.59348 -21.36449 -19.48809 -18.45285 -17.70728 -17.54334 -16.54720 -16.02274 -15.88290 -15.56018 -15.41768 -14.98676 -14.78242 -14.56234 -14.22919 -14.03179 -13.69177 -13.37328 -13.28235 -13.00527 -12.77581 -12.53998 -12.48114 -12.21895 -12.04231 -11.90317 -11.74921 -11.67361 -11.57270 -11.55252 -11.41501 -11.13272 -11.07465 -10.96836 -10.85062 -10.76092 -10.51519 -10.37133 -10.36280 -10.01732 -9.73410 -9.32663 -8.80461 -8.50283 -8.23098 -6.12279 -4.17889 0.79373 3.05101 3.25864 3.30871 3.32466 3.68007 4.00698 4.31424 4.39986 4.50551 4.57580 4.64737 4.79607 4.80476 4.90953 4.98432 5.09538 5.20169 5.22693 5.28547 5.31618 5.36934 5.42677 5.46270 5.56665 5.59703 5.64548 5.66437 5.70011 5.74036 5.76615 5.86743 5.92831 5.98135 6.08452 6.16439 6.25280 6.34489 6.50581 6.71527 6.96295 7.01497 7.30446 7.36923 7.39254 7.80157 8.17918 8.84983 9.46550 10.98770 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011145 B = 0.004057 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2511.780200 B = 6900.585171 C = 8008.707127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.112 4.112 3 C 0.066 3.934 4 H 0.079 0.921 5 C 0.130 3.870 6 N -1.007 6.007 7 S 2.590 3.410 8 O -0.964 6.964 9 O -0.965 6.965 10 C -0.588 4.588 11 C 0.029 3.971 12 C -0.519 4.519 13 H 0.060 0.940 14 C 0.058 3.942 15 N -0.890 5.890 16 Si 0.899 3.101 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.276 1.276 20 C 0.129 3.871 21 C 0.036 3.964 22 N -0.526 5.526 23 C 0.054 3.946 24 C 0.059 3.941 25 H 0.059 0.941 26 C -0.182 4.182 27 O -0.557 6.557 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.071 0.929 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.033 0.967 38 H 0.032 0.968 39 H 0.266 0.734 40 H 0.074 0.926 41 H 0.092 0.908 42 H 0.082 0.918 43 H 0.045 0.955 44 H 0.086 0.914 45 H 0.090 0.910 46 H 0.062 0.938 47 H 0.056 0.944 48 H 0.064 0.936 49 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.731 -19.391 -3.284 23.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.150 4.150 3 C -0.043 4.043 4 H 0.096 0.904 5 C 0.005 3.995 6 N -0.843 5.843 7 S 2.688 3.312 8 O -0.954 6.954 9 O -0.955 6.955 10 C -0.722 4.722 11 C -0.010 4.010 12 C -0.559 4.559 13 H 0.078 0.922 14 C -0.144 4.144 15 N -0.528 5.528 16 Si 0.727 3.273 17 H -0.201 1.201 18 H -0.210 1.210 19 H -0.201 1.201 20 C 0.003 3.997 21 C -0.093 4.093 22 N -0.249 5.249 23 C -0.074 4.074 24 C -0.001 4.001 25 H 0.076 0.924 26 C -0.241 4.241 27 O -0.364 6.364 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.110 0.890 34 H 0.090 0.910 35 H 0.134 0.866 36 H 0.136 0.864 37 H 0.051 0.949 38 H 0.051 0.949 39 H 0.075 0.925 40 H 0.093 0.907 41 H 0.110 0.890 42 H 0.101 0.899 43 H 0.063 0.937 44 H 0.104 0.896 45 H 0.108 0.892 46 H 0.082 0.918 47 H 0.075 0.925 48 H 0.083 0.917 49 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 12.561 -19.384 -1.288 23.134 hybrid contribution -0.336 0.898 -3.053 3.200 sum 12.225 -18.486 -4.341 22.584 Atomic orbital electron populations 1.21814 0.95436 1.01642 1.02442 1.21571 0.95860 0.95481 1.02125 1.22239 0.86947 0.96745 0.98396 0.90361 1.21587 0.97654 0.82479 0.97828 1.58032 1.16086 1.20700 1.89525 1.05731 0.73647 0.72848 0.78932 1.93532 1.51055 1.79654 1.71157 1.93530 1.64361 1.62292 1.75354 1.30491 1.10477 1.10890 1.20304 1.18953 0.93928 0.88187 0.99955 1.20946 1.32735 1.10861 0.91341 0.92211 1.25060 0.95720 0.96350 0.97288 1.69945 1.35502 1.17835 1.29544 0.86542 0.78536 0.78133 0.84114 1.20094 1.21040 1.20148 1.21417 0.79872 1.00799 0.97648 1.22562 0.99878 0.89116 0.97786 1.62084 1.08805 1.11412 1.42577 1.22484 1.01002 0.97785 0.86156 1.22689 0.82305 0.98962 0.96182 0.92353 1.22454 1.01305 1.01506 0.98796 1.86619 1.22695 1.81624 1.45414 0.92307 0.92806 0.92277 0.91757 0.91246 0.88967 0.91050 0.86579 0.86392 0.94898 0.94934 0.92468 0.90721 0.88966 0.89944 0.93659 0.89563 0.89195 0.91850 0.92456 0.91716 0.77789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 9.45 37.16 0.35 -1.19 16 2 C -0.11 -1.10 5.06 -26.73 -0.14 -1.24 16 3 C 0.07 0.75 1.51 -67.60 -0.10 0.65 16 4 H 0.08 1.00 5.83 -51.93 -0.30 0.70 16 5 C 0.13 1.72 5.23 -3.60 -0.02 1.70 16 6 N -1.01 -14.75 3.26 -113.23 -0.37 -15.12 16 7 S 2.59 48.84 5.41 -107.50 -0.58 48.26 16 8 O -0.96 -20.70 16.79 -57.54 -0.97 -21.67 16 9 O -0.96 -20.56 16.79 -57.54 -0.97 -21.53 16 10 C -0.59 -11.58 6.11 37.15 0.23 -11.35 16 11 C 0.03 0.74 4.98 -27.88 -0.14 0.61 16 12 C -0.52 -14.39 9.11 -34.44 -0.31 -14.70 16 13 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 15 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 16 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 C 0.13 1.58 6.47 -3.60 -0.02 1.56 16 21 C 0.04 0.37 4.68 -3.70 -0.02 0.35 16 22 N -0.53 -5.37 4.68 -226.37 -1.06 -6.43 16 23 C 0.05 0.44 5.01 -3.83 -0.02 0.43 16 24 C 0.06 0.47 3.14 -26.73 -0.08 0.38 16 25 H 0.06 0.49 6.09 -51.93 -0.32 0.17 16 26 C -0.18 -1.14 9.53 37.16 0.35 -0.79 16 27 O -0.56 -5.13 10.45 -35.23 -0.37 -5.50 16 28 H 0.06 0.60 6.90 -51.93 -0.36 0.24 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.66 5.97 -51.93 -0.31 0.35 16 33 H 0.09 1.27 6.00 -51.93 -0.31 0.96 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.12 2.06 8.14 -51.92 -0.42 1.64 16 36 H 0.12 2.13 8.14 -51.92 -0.42 1.71 16 37 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.09 1.14 7.19 -51.93 -0.37 0.76 16 42 H 0.08 0.68 8.11 -51.93 -0.42 0.25 16 43 H 0.05 0.49 6.53 -51.93 -0.34 0.15 16 44 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.09 0.75 5.43 -51.93 -0.28 0.47 16 46 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.37 2.52 9.08 45.56 0.41 2.94 16 LS Contribution 386.31 15.07 5.82 5.82 Total: -1.00 -34.64 386.31 -10.43 -45.07 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -7.64 Total: 2.82 kcal Atomic # 6 Polarization: -22.02 SS G_CDS: -0.02 Total: -22.04 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: -0.69 Total: -47.37 kcal Atomic # 8 Polarization: -46.39 SS G_CDS: -2.30 Total: -48.69 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: 48.84 SS G_CDS: -0.58 Total: 48.26 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.64 -10.43 -45.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122745168.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.723 kcal (2) G-P(sol) polarization free energy of solvation -34.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds