Wall clock time and date at job start Tue Mar 31 2020 17:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47594 * 2 1 4 4 H 1.08999 * 109.48717 * 301.15302 * 3 2 1 5 5 C 1.53233 * 109.49088 * 61.22953 * 3 2 1 6 6 N 1.47084 * 108.52068 * 173.79328 * 5 3 2 7 7 S 1.65599 * 120.88140 * 128.79432 * 6 5 3 8 8 O 1.42103 * 104.27797 * 26.09645 * 7 6 5 9 9 O 1.42106 * 104.27330 * 153.95054 * 7 6 5 10 10 C 1.81395 * 104.44977 * 270.02045 * 7 6 5 11 11 C 1.52994 * 109.47251 * 180.02562 * 10 7 6 12 12 C 1.50705 * 109.47310 * 180.02562 * 11 10 7 13 13 H 1.07997 * 120.00037 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99799 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00189 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99601 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47144 * 60.00263 * 16 14 12 18 18 H 1.48503 * 109.47082 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47324 * 300.00359 * 16 14 12 20 20 C 1.47077 * 118.23453 * 308.81545 * 6 5 3 21 21 C 1.53238 * 108.52174 * 51.18647 * 20 6 5 22 22 N 1.46896 * 109.49346 * 181.09967 * 3 2 1 23 23 C 1.46890 * 111.00344 * 52.78564 * 22 3 2 24 24 C 1.53000 * 109.47241 * 73.62938 * 23 22 3 25 25 H 1.09000 * 109.47282 * 53.64172 * 24 23 22 26 26 C 1.53004 * 109.47505 * 173.64273 * 24 23 22 27 27 O 1.42896 * 109.47089 * 293.64148 * 24 23 22 28 28 H 1.08999 * 109.47137 * 294.84279 * 1 2 3 29 29 H 1.08999 * 109.47310 * 174.83548 * 1 2 3 30 30 H 1.08999 * 109.46702 * 54.83786 * 1 2 3 31 31 H 1.09000 * 109.46805 * 120.00065 * 2 1 3 32 32 H 1.09001 * 109.47032 * 239.99347 * 2 1 3 33 33 H 1.09007 * 109.63379 * 293.49947 * 5 3 2 34 34 H 1.09001 * 109.63052 * 54.08528 * 5 3 2 35 35 H 1.09006 * 109.47193 * 300.00256 * 10 7 6 36 36 H 1.09002 * 109.47039 * 60.00084 * 10 7 6 37 37 H 1.09006 * 109.47145 * 300.00180 * 11 10 7 38 38 H 1.09001 * 109.47485 * 60.00415 * 11 10 7 39 39 H 0.97003 * 119.99674 * 179.97438 * 15 14 12 40 40 H 1.09004 * 109.62935 * 291.47485 * 20 6 5 41 41 H 1.09001 * 109.62687 * 170.89237 * 20 6 5 42 42 H 1.08999 * 109.49425 * 186.21035 * 21 20 6 43 43 H 1.08998 * 109.51970 * 66.14056 * 21 20 6 44 44 H 1.08994 * 109.47556 * 193.62783 * 23 22 3 45 45 H 1.09003 * 109.47231 * 313.63135 * 23 22 3 46 46 H 1.09000 * 109.46933 * 59.99685 * 26 24 23 47 47 H 1.08999 * 109.47535 * 179.97438 * 26 24 23 48 48 H 1.09004 * 109.47027 * 300.00475 * 26 24 23 49 49 H 0.96706 * 114.00301 * 180.02562 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6602 1.9625 -0.8794 5 6 1.5551 2.1563 1.2662 6 7 2.1775 3.4879 1.3193 7 16 1.2595 4.8466 1.5502 8 8 0.1135 4.3806 2.2495 9 8 2.1536 5.7764 2.1463 10 6 0.8104 5.3794 -0.1246 11 6 -0.0491 6.6426 -0.0447 12 6 -0.4228 7.0848 -1.4360 13 1 -0.0817 6.5211 -2.2917 14 6 -1.2009 8.2086 -1.6165 15 7 -1.6167 8.8949 -0.5745 16 14 -1.6635 8.7572 -3.3412 17 1 -2.4297 7.6783 -4.0150 18 1 -2.4978 9.9833 -3.2636 19 1 -0.4302 9.0465 -4.1161 20 6 3.6369 3.5806 1.1615 21 6 4.0399 2.8106 -0.1006 22 7 3.5088 1.4430 -0.0266 23 6 4.0157 0.6208 -1.1333 24 6 3.7947 1.3553 -2.4571 25 1 4.2307 2.3525 -2.3966 26 6 4.4622 0.5748 -3.5912 27 8 2.3931 1.4632 -2.7138 28 1 -0.3633 0.4317 0.9326 29 1 -0.3634 -1.0235 -0.0925 30 1 -0.3633 0.5918 -0.8402 31 1 1.8933 -0.5139 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 0.4704 2.2601 1.2354 34 1 1.8459 1.5809 2.1451 35 1 1.7157 5.5917 -0.6934 36 1 0.2479 4.5875 -0.6192 37 1 -0.9544 6.4306 0.5243 38 1 0.5137 7.4344 0.4497 39 1 -2.1639 9.6857 -0.7015 40 1 4.1278 3.1420 2.0304 41 1 3.9286 4.6260 1.0614 42 1 5.1269 2.7752 -0.1736 43 1 3.6326 3.3119 -0.9786 44 1 5.0810 0.4387 -0.9924 45 1 3.4838 -0.3305 -1.1524 46 1 4.0262 -0.4223 -3.6517 47 1 4.3044 1.0978 -4.5344 48 1 5.5314 0.4925 -3.3954 49 1 2.1783 1.9188 -3.5393 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122745168.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:08 Heat of formation + Delta-G solvation = -148.602438 kcal Electronic energy + Delta-G solvation = -29340.357811 eV Core-core repulsion = 25428.330054 eV Total energy + Delta-G solvation = -3912.027757 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.81711 -38.27304 -38.07355 -37.05794 -35.92480 -35.62461 -34.79919 -33.15129 -31.94675 -30.47744 -28.26635 -27.60591 -25.71524 -25.07739 -23.68686 -22.71426 -22.30550 -20.45753 -19.78972 -19.12356 -18.40339 -18.30457 -17.32190 -17.11124 -16.70258 -16.53483 -16.39575 -15.98609 -15.69077 -15.21226 -15.12182 -14.89075 -14.53667 -14.45302 -14.06765 -13.88889 -13.76203 -13.50869 -13.30783 -13.24567 -13.24489 -13.03347 -12.92585 -12.82914 -12.79404 -12.56668 -12.52563 -12.27123 -12.21190 -12.17243 -12.10618 -11.83040 -11.64981 -11.56723 -11.39658 -11.06593 -10.66473 -10.65336 -10.01895 -9.05125 -8.26844 -6.41425 -0.75303 1.39455 1.43145 1.51422 1.68582 2.36999 2.81112 2.92451 3.06218 3.11651 3.42037 3.59184 3.91462 3.96109 4.02498 4.05943 4.14144 4.18748 4.25493 4.28337 4.38432 4.40468 4.52538 4.66156 4.67858 4.70412 4.74860 4.77868 4.90786 4.94528 4.97419 5.02199 5.06636 5.13548 5.15939 5.23343 5.23679 5.25854 5.35941 5.43803 5.50564 5.61563 5.66128 6.04271 6.18933 6.21085 6.71255 6.86684 7.28701 8.85361 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011145 B = 0.004057 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2511.780200 B = 6900.585171 C = 8008.707127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.104 4.104 3 C 0.072 3.928 4 H 0.066 0.934 5 C 0.124 3.876 6 N -0.997 5.997 7 S 2.610 3.390 8 O -0.994 6.994 9 O -0.992 6.992 10 C -0.583 4.583 11 C 0.023 3.977 12 C -0.539 4.539 13 H 0.074 0.926 14 C -0.002 4.002 15 N -0.934 5.934 16 Si 0.974 3.026 17 H -0.263 1.263 18 H -0.284 1.284 19 H -0.262 1.262 20 C 0.119 3.881 21 C 0.040 3.960 22 N -0.528 5.528 23 C 0.053 3.947 24 C 0.059 3.941 25 H 0.055 0.945 26 C -0.176 4.176 27 O -0.575 6.575 28 H 0.051 0.949 29 H 0.067 0.933 30 H 0.048 0.952 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.137 0.863 36 H 0.134 0.866 37 H 0.004 0.996 38 H 0.006 0.994 39 H 0.268 0.732 40 H 0.086 0.914 41 H 0.090 0.910 42 H 0.110 0.890 43 H 0.040 0.960 44 H 0.105 0.895 45 H 0.090 0.910 46 H 0.060 0.940 47 H 0.058 0.942 48 H 0.075 0.925 49 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.356 -21.194 -5.270 26.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.143 4.143 3 C -0.038 4.038 4 H 0.084 0.916 5 C -0.001 4.001 6 N -0.836 5.836 7 S 2.708 3.292 8 O -0.984 6.984 9 O -0.982 6.982 10 C -0.715 4.715 11 C -0.016 4.016 12 C -0.577 4.577 13 H 0.093 0.907 14 C -0.201 4.201 15 N -0.574 5.574 16 Si 0.798 3.202 17 H -0.188 1.188 18 H -0.209 1.209 19 H -0.187 1.187 20 C -0.006 4.006 21 C -0.090 4.090 22 N -0.251 5.251 23 C -0.074 4.074 24 C -0.001 4.001 25 H 0.073 0.927 26 C -0.234 4.234 27 O -0.383 6.383 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.156 0.844 36 H 0.153 0.847 37 H 0.023 0.977 38 H 0.024 0.976 39 H 0.077 0.923 40 H 0.104 0.896 41 H 0.108 0.892 42 H 0.128 0.872 43 H 0.058 0.942 44 H 0.123 0.877 45 H 0.108 0.892 46 H 0.079 0.921 47 H 0.077 0.923 48 H 0.094 0.906 49 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 14.195 -21.194 -3.292 25.720 hybrid contribution -0.789 1.389 -2.381 2.867 sum 13.406 -19.805 -5.673 24.580 Atomic orbital electron populations 1.21818 0.95714 1.02249 1.01606 1.21513 0.95541 0.94500 1.02700 1.22132 0.87982 0.97181 0.96519 0.91603 1.21792 0.97245 0.81646 0.99467 1.57677 1.16916 1.19738 1.89262 1.04831 0.73069 0.73147 0.78124 1.93485 1.52822 1.80284 1.71818 1.93487 1.64888 1.64004 1.75809 1.30358 1.10513 1.08502 1.22118 1.18807 0.93534 0.90316 0.98958 1.21437 1.32685 1.11218 0.92403 0.90741 1.26117 0.95553 0.96442 1.01980 1.70099 1.36454 1.18490 1.32316 0.85363 0.78678 0.77772 0.78434 1.18775 1.20901 1.18682 1.21717 0.77971 1.01418 0.99480 1.22568 1.01434 0.88854 0.96126 1.62087 1.07795 1.11479 1.43772 1.22584 1.01990 0.97266 0.85603 1.22707 0.81855 0.98968 0.96591 0.92674 1.22381 1.01764 1.01042 0.98203 1.86586 1.23600 1.81877 1.46213 0.93031 0.91443 0.93286 0.91174 0.90527 0.89977 0.90191 0.84438 0.84740 0.97733 0.97571 0.92344 0.89573 0.89154 0.87216 0.94169 0.87701 0.89178 0.92056 0.92283 0.90606 0.76794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 9.45 71.98 0.68 -2.25 16 2 C -0.10 -1.86 5.06 30.59 0.15 -1.71 16 3 C 0.07 1.51 1.51 44.99 0.07 1.58 16 4 H 0.07 1.59 5.83 -2.39 -0.01 1.58 16 5 C 0.12 3.16 5.23 86.35 0.45 3.61 16 6 N -1.00 -28.48 3.26 -512.16 -1.67 -30.15 16 7 S 2.61 100.09 5.41 -56.49 -0.31 99.78 16 8 O -0.99 -43.94 16.79 -127.65 -2.14 -46.08 16 9 O -0.99 -43.05 16.79 -127.65 -2.14 -45.19 16 10 C -0.58 -23.13 6.11 71.98 0.44 -22.69 16 11 C 0.02 1.22 4.98 29.85 0.15 1.37 16 12 C -0.54 -30.09 9.11 25.60 0.23 -29.86 16 13 H 0.07 3.83 7.74 -2.91 -0.02 3.81 16 14 C 0.00 -0.14 5.46 84.66 0.46 0.33 16 15 N -0.93 -57.22 13.29 21.45 0.28 -56.94 16 16 Si 0.97 43.19 29.54 68.60 2.03 45.22 16 17 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 18 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 19 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 20 C 0.12 2.73 6.47 86.35 0.56 3.29 16 21 C 0.04 0.71 4.68 86.38 0.40 1.11 16 22 N -0.53 -9.44 4.68 -870.09 -4.07 -13.51 16 23 C 0.05 0.72 5.01 86.31 0.43 1.15 16 24 C 0.06 0.78 3.14 30.60 0.10 0.88 16 25 H 0.06 0.78 6.09 -2.39 -0.01 0.76 16 26 C -0.18 -1.73 9.53 71.98 0.69 -1.05 16 27 O -0.57 -9.54 10.45 -148.98 -1.56 -11.09 16 28 H 0.05 1.03 6.90 -2.39 -0.02 1.01 16 29 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.08 1.29 5.97 -2.39 -0.01 1.27 16 33 H 0.08 2.27 6.00 -2.38 -0.01 2.25 16 34 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.14 4.79 8.14 -2.39 -0.02 4.78 16 36 H 0.13 4.84 8.14 -2.39 -0.02 4.82 16 37 H 0.00 0.25 8.14 -2.38 -0.02 0.23 16 38 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 39 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 40 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.09 2.12 7.19 -2.39 -0.02 2.10 16 42 H 0.11 1.41 8.11 -2.39 -0.02 1.39 16 43 H 0.04 0.78 6.53 -2.39 -0.02 0.77 16 44 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.09 1.24 5.43 -2.39 -0.01 1.23 16 46 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 47 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 48 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 49 H 0.38 4.58 9.08 -74.05 -0.67 3.91 16 Total: -1.00 -75.58 386.31 -4.50 -80.08 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: 0.26 Total: 22.11 kcal Atomic # 6 Polarization: -49.05 SS G_CDS: 4.82 Total: -44.23 kcal Atomic # 7 Polarization: -95.14 SS G_CDS: -5.45 Total: -100.59 kcal Atomic # 8 Polarization: -96.53 SS G_CDS: -5.84 Total: -102.37 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Atomic # 16 Polarization: 100.09 SS G_CDS: -0.31 Total: 99.78 kcal Total: -75.58 -4.50 -80.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122745168.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.525 kcal (2) G-P(sol) polarization free energy of solvation -75.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds