Wall clock time and date at job start Tue Mar 31 2020 18:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47288 * 2 1 4 4 N 1.46496 * 109.47272 * 180.02562 * 3 2 1 5 5 C 1.37099 * 120.00113 * 270.00410 * 4 3 2 6 6 H 1.07998 * 120.00619 * 145.34113 * 5 4 3 7 7 C 1.38954 * 119.99517 * 325.34545 * 5 4 3 8 8 N 1.31410 * 120.00175 * 337.20774 * 7 5 4 9 9 Si 1.86805 * 120.00029 * 157.21621 * 7 5 4 10 10 H 1.48495 * 109.47549 * 59.99253 * 9 7 5 11 11 H 1.48496 * 109.47096 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46686 * 299.99518 * 9 7 5 13 13 C 1.34775 * 120.00484 * 89.99874 * 4 3 2 14 14 O 1.21293 * 119.99603 * 4.88436 * 13 4 3 15 15 C 1.50699 * 120.00274 * 184.88266 * 13 4 3 16 16 N 1.46506 * 109.46997 * 179.72106 * 15 13 4 17 17 C 1.34771 * 119.99754 * 179.97438 * 16 15 13 18 18 O 1.21582 * 120.00303 * 0.02562 * 17 16 15 19 19 C 1.47606 * 120.00073 * 180.02562 * 17 16 15 20 20 C 1.39726 * 120.09197 * 180.02562 * 19 17 16 21 21 C 1.37706 * 119.91459 * 180.02562 * 20 19 17 22 22 C 1.38997 * 120.08495 * 0.02562 * 21 20 19 23 23 O 1.35706 * 119.91051 * 179.97438 * 22 21 20 24 24 C 1.42898 * 117.00301 * 180.02562 * 23 22 21 25 25 C 1.52993 * 109.47563 * 179.97438 * 24 23 22 26 26 C 1.38999 * 120.17506 * 0.25211 * 22 21 20 27 27 C 1.37696 * 120.09077 * 359.44843 * 26 22 21 28 28 H 1.09010 * 109.47243 * 59.99677 * 1 2 3 29 29 H 1.08997 * 109.47556 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46898 * 300.00048 * 1 2 3 31 31 H 1.09005 * 109.47247 * 240.00159 * 2 1 3 32 32 H 1.09000 * 109.47116 * 120.00462 * 2 1 3 33 33 H 1.08998 * 109.47190 * 60.00131 * 3 2 1 34 34 H 1.09000 * 109.47419 * 300.00277 * 3 2 1 35 35 H 0.97000 * 120.00062 * 185.01004 * 8 7 5 36 36 H 1.08993 * 109.46928 * 59.72678 * 15 13 4 37 37 H 1.08990 * 109.47191 * 299.72315 * 15 13 4 38 38 H 0.97004 * 119.99966 * 0.02562 * 16 15 13 39 39 H 1.08005 * 120.04607 * 0.02562 * 20 19 17 40 40 H 1.07998 * 119.95738 * 179.97438 * 21 20 19 41 41 H 1.09001 * 109.47178 * 300.00283 * 24 23 22 42 42 H 1.09003 * 109.47378 * 59.99759 * 24 23 22 43 43 H 1.09008 * 109.47160 * 60.00235 * 25 24 23 44 44 H 1.08997 * 109.47468 * 180.02562 * 25 24 23 45 45 H 1.09000 * 109.47502 * 299.99938 * 25 24 23 46 46 H 1.08006 * 119.94787 * 179.72590 * 26 22 21 47 47 H 1.08003 * 120.04356 * 180.28059 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1910 1.4422 1.1864 6 1 5.1273 0.9103 1.2690 7 6 3.6815 2.1263 2.2833 8 7 2.8294 3.1108 2.1060 9 14 4.2080 1.6465 4.0102 10 1 5.6789 1.8036 4.1410 11 1 3.5265 2.5225 4.9968 12 1 3.8367 0.2316 4.2657 13 6 4.1784 1.4426 -1.1680 14 8 3.5749 1.5322 -2.2163 15 6 5.6813 1.3315 -1.1710 16 7 6.1695 1.3478 -2.5522 17 6 7.4911 1.2600 -2.8009 18 8 8.2783 1.1668 -1.8790 19 6 7.9830 1.2769 -4.1925 20 6 9.3529 1.1854 -4.4525 21 6 9.8078 1.2021 -5.7521 22 6 8.9064 1.3104 -6.8046 23 8 9.3586 1.3270 -8.0839 24 6 8.3782 1.4409 -9.1172 25 6 9.0721 1.4435 -10.4808 26 6 7.5434 1.4074 -6.5499 27 6 7.0800 1.3852 -5.2534 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9564 -0.8899 35 1 2.5296 3.6355 2.8648 36 1 5.9776 0.3984 -0.6920 37 1 6.1088 2.1721 -0.6246 38 1 5.5414 1.4226 -3.2878 39 1 10.0540 1.1017 -3.6352 40 1 10.8665 1.1319 -5.9538 41 1 7.6908 0.5969 -9.0606 42 1 7.8232 2.3705 -8.9907 43 1 9.6274 0.5140 -10.6076 44 1 8.3243 1.5308 -11.2689 45 1 9.7592 2.2878 -10.5373 46 1 6.8465 1.4958 -7.3703 47 1 6.0204 1.4561 -5.0566 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122919628.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:06 Heat of formation + Delta-G solvation = -89.351697 kcal Electronic energy + Delta-G solvation = -27983.850979 eV Core-core repulsion = 23938.948575 eV Total energy + Delta-G solvation = -4044.902403 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.53337 -39.48879 -38.54369 -37.15174 -35.40697 -33.92195 -32.86344 -32.35628 -31.43799 -31.10474 -30.11296 -27.50639 -25.67074 -24.57369 -24.10932 -23.25479 -21.86770 -20.81517 -20.13971 -19.32187 -18.69256 -17.97169 -16.73436 -16.45697 -16.22055 -15.76936 -15.24469 -15.08014 -14.94407 -14.57631 -14.37004 -14.03787 -13.92802 -13.80694 -13.70346 -13.58387 -13.32331 -13.00724 -12.73046 -12.47758 -12.32878 -12.17476 -11.99087 -11.81929 -11.55342 -11.40780 -11.28302 -11.01984 -10.99857 -10.98053 -10.70466 -10.42402 -10.36335 -9.82448 -9.69484 -9.23739 -9.22970 -8.72374 -8.62738 -8.34509 -7.61953 -6.47552 -4.14677 0.86469 1.18891 2.85005 2.99136 3.08999 3.18021 3.20542 3.46608 3.71636 3.88528 4.05370 4.47242 4.53243 4.62154 4.68632 4.73346 4.85767 4.88666 4.95990 5.05523 5.17901 5.29628 5.38380 5.51483 5.62628 5.71495 5.75368 5.80416 5.88434 5.97992 6.09975 6.13267 6.15912 6.28631 6.35555 6.43284 6.48279 6.50097 6.61535 6.74801 6.77345 7.04558 7.11266 7.28707 7.44326 7.80079 7.92363 8.25983 8.54186 8.94817 9.34827 9.77470 10.53619 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017391 B = 0.002308 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.684497 B =12127.713587 C =13372.165962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.133 4.133 3 C 0.109 3.891 4 N -0.426 5.426 5 C -0.353 4.353 6 H 0.094 0.906 7 C 0.049 3.951 8 N -0.854 5.854 9 Si 0.916 3.084 10 H -0.270 1.270 11 H -0.283 1.283 12 H -0.271 1.271 13 C 0.458 3.542 14 O -0.610 6.610 15 C 0.119 3.881 16 N -0.708 5.708 17 C 0.557 3.443 18 O -0.547 6.547 19 C -0.166 4.166 20 C -0.021 4.021 21 C -0.163 4.163 22 C 0.150 3.850 23 O -0.314 6.314 24 C 0.051 3.949 25 C -0.152 4.152 26 C -0.217 4.217 27 C -0.042 4.042 28 H 0.049 0.951 29 H 0.045 0.955 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.110 0.890 34 H 0.056 0.944 35 H 0.273 0.727 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.406 0.594 39 H 0.144 0.856 40 H 0.136 0.864 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.078 0.922 45 H 0.066 0.934 46 H 0.133 0.867 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.927 -3.345 -16.662 18.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.172 4.172 3 C -0.014 4.014 4 N -0.143 5.143 5 C -0.480 4.480 6 H 0.112 0.888 7 C -0.158 4.158 8 N -0.490 5.490 9 Si 0.742 3.258 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.196 1.196 13 C 0.247 3.753 14 O -0.498 6.498 15 C -0.008 4.008 16 N -0.361 5.361 17 C 0.344 3.656 18 O -0.426 6.426 19 C -0.169 4.169 20 C -0.039 4.039 21 C -0.181 4.181 22 C 0.104 3.896 23 O -0.228 6.228 24 C -0.024 4.024 25 C -0.209 4.209 26 C -0.236 4.236 27 C -0.061 4.061 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.127 0.873 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.104 0.896 37 H 0.113 0.887 38 H 0.245 0.755 39 H 0.162 0.838 40 H 0.154 0.846 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.097 0.903 45 H 0.085 0.915 46 H 0.151 0.849 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 7.152 -3.260 -16.413 18.198 hybrid contribution -0.405 -0.081 0.626 0.750 sum 6.747 -3.341 -15.787 17.490 Atomic orbital electron populations 1.21654 0.96472 1.00506 1.01450 1.21819 0.94789 0.99241 1.01314 1.21544 0.80988 0.94853 1.04000 1.43394 1.04998 1.61560 1.04304 1.19461 1.07912 1.33378 0.87248 0.88809 1.25355 0.96243 0.93794 1.00427 1.69843 1.31469 1.15333 1.32357 0.86158 0.79241 0.78912 0.81451 1.19452 1.20845 1.19619 1.20198 0.88687 0.81828 0.84635 1.90487 1.69861 1.57477 1.31993 1.20923 0.93668 1.03973 0.82204 1.45747 1.07064 1.73429 1.09881 1.18073 0.82260 0.76926 0.88364 1.90762 1.55464 1.50657 1.45722 1.19920 0.94455 1.09488 0.93057 1.21091 0.94508 0.92263 0.96082 1.20382 0.99663 1.07867 0.90237 1.19245 0.92433 0.93946 0.83997 1.86028 1.36556 1.87624 1.12577 1.22847 0.91222 1.01639 0.86661 1.21779 1.01724 1.03541 0.93878 1.21164 0.94281 1.10071 0.98082 1.21232 0.99797 0.93587 0.91501 0.93145 0.93571 0.92899 0.93163 0.92129 0.87261 0.92547 0.91651 0.89614 0.88667 0.75541 0.83831 0.84611 0.91729 0.91719 0.91490 0.90273 0.91484 0.84939 0.84829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.91 37.16 0.37 -1.97 16 2 C -0.13 -2.64 6.26 -26.73 -0.17 -2.81 16 3 C 0.11 2.54 5.05 -4.04 -0.02 2.52 16 4 N -0.43 -10.41 2.54 -114.81 -0.29 -10.70 16 5 C -0.35 -8.71 8.69 -14.93 -0.13 -8.84 16 6 H 0.09 2.23 7.01 -52.49 -0.37 1.86 16 7 C 0.05 1.20 4.95 -17.47 -0.09 1.12 16 8 N -0.85 -21.92 11.34 55.50 0.63 -21.29 16 9 Si 0.92 19.13 29.61 -169.99 -5.03 14.09 16 10 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 11 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 12 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 13 C 0.46 10.77 7.70 -10.99 -0.08 10.69 16 14 O -0.61 -15.00 15.22 5.55 0.08 -14.92 16 15 C 0.12 2.47 4.76 -5.19 -0.02 2.44 16 16 N -0.71 -12.97 5.48 -62.51 -0.34 -13.31 16 17 C 0.56 9.94 7.76 -12.44 -0.10 9.84 16 18 O -0.55 -11.31 16.34 5.29 0.09 -11.22 16 19 C -0.17 -2.41 5.88 -104.96 -0.62 -3.02 16 20 C -0.02 -0.27 9.58 -39.22 -0.38 -0.64 16 21 C -0.16 -1.84 9.97 -39.49 -0.39 -2.23 16 22 C 0.15 1.68 6.70 -39.02 -0.26 1.41 16 23 O -0.31 -3.19 10.12 -18.82 -0.19 -3.38 16 24 C 0.05 0.36 5.45 37.15 0.20 0.56 16 25 C -0.15 -0.79 10.28 37.15 0.38 -0.41 16 26 C -0.22 -2.35 9.01 -39.50 -0.36 -2.70 16 27 C -0.04 -0.53 9.53 -39.22 -0.37 -0.90 16 28 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 33 H 0.11 2.69 5.36 -51.93 -0.28 2.41 16 34 H 0.06 1.35 7.36 -51.93 -0.38 0.97 16 35 H 0.27 6.62 8.32 -40.82 -0.34 6.28 16 36 H 0.09 1.76 7.78 -51.93 -0.40 1.35 16 37 H 0.10 2.07 8.04 -51.93 -0.42 1.65 16 38 H 0.41 7.02 5.46 -40.82 -0.22 6.80 16 39 H 0.14 1.80 7.64 -52.48 -0.40 1.40 16 40 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 41 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 42 H 0.06 0.41 7.64 -51.93 -0.40 0.01 16 43 H 0.07 0.36 8.14 -51.92 -0.42 -0.07 16 44 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 45 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.13 1.11 6.28 -52.48 -0.33 0.78 16 47 H 0.13 1.56 6.40 -52.48 -0.34 1.22 16 LS Contribution 391.60 15.07 5.90 5.90 Total: -1.00 -29.89 391.60 -8.07 -37.95 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -6.87 Total: 11.83 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: -2.03 Total: 5.05 kcal Atomic # 7 Polarization: -45.29 SS G_CDS: 0.00 Total: -45.30 kcal Atomic # 8 Polarization: -29.50 SS G_CDS: -0.02 Total: -29.52 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.03 Total: 14.09 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -29.89 -8.07 -37.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122919628.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.398 kcal (2) G-P(sol) polarization free energy of solvation -29.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds