Wall clock time and date at job start Tue Mar 31 2020 18:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47288 * 2 1 4 4 N 1.46496 * 109.47272 * 180.02562 * 3 2 1 5 5 C 1.37099 * 120.00113 * 270.00410 * 4 3 2 6 6 H 1.07998 * 120.00619 * 145.34113 * 5 4 3 7 7 C 1.38954 * 119.99517 * 325.34545 * 5 4 3 8 8 N 1.31410 * 120.00175 * 337.20774 * 7 5 4 9 9 Si 1.86805 * 120.00029 * 157.21621 * 7 5 4 10 10 H 1.48495 * 109.47549 * 59.99253 * 9 7 5 11 11 H 1.48496 * 109.47096 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46686 * 299.99518 * 9 7 5 13 13 C 1.34775 * 120.00484 * 89.99874 * 4 3 2 14 14 O 1.21293 * 119.99603 * 4.88436 * 13 4 3 15 15 C 1.50699 * 120.00274 * 184.88266 * 13 4 3 16 16 N 1.46506 * 109.46997 * 179.72106 * 15 13 4 17 17 C 1.34771 * 119.99754 * 179.97438 * 16 15 13 18 18 O 1.21582 * 120.00303 * 0.02562 * 17 16 15 19 19 C 1.47606 * 120.00073 * 180.02562 * 17 16 15 20 20 C 1.39726 * 120.09197 * 180.02562 * 19 17 16 21 21 C 1.37706 * 119.91459 * 180.02562 * 20 19 17 22 22 C 1.38997 * 120.08495 * 0.02562 * 21 20 19 23 23 O 1.35706 * 119.91051 * 179.97438 * 22 21 20 24 24 C 1.42898 * 117.00301 * 180.02562 * 23 22 21 25 25 C 1.52993 * 109.47563 * 179.97438 * 24 23 22 26 26 C 1.38999 * 120.17506 * 0.25211 * 22 21 20 27 27 C 1.37696 * 120.09077 * 359.44843 * 26 22 21 28 28 H 1.09010 * 109.47243 * 59.99677 * 1 2 3 29 29 H 1.08997 * 109.47556 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46898 * 300.00048 * 1 2 3 31 31 H 1.09005 * 109.47247 * 240.00159 * 2 1 3 32 32 H 1.09000 * 109.47116 * 120.00462 * 2 1 3 33 33 H 1.08998 * 109.47190 * 60.00131 * 3 2 1 34 34 H 1.09000 * 109.47419 * 300.00277 * 3 2 1 35 35 H 0.97000 * 120.00062 * 185.01004 * 8 7 5 36 36 H 1.08993 * 109.46928 * 59.72678 * 15 13 4 37 37 H 1.08990 * 109.47191 * 299.72315 * 15 13 4 38 38 H 0.97004 * 119.99966 * 0.02562 * 16 15 13 39 39 H 1.08005 * 120.04607 * 0.02562 * 20 19 17 40 40 H 1.07998 * 119.95738 * 179.97438 * 21 20 19 41 41 H 1.09001 * 109.47178 * 300.00283 * 24 23 22 42 42 H 1.09003 * 109.47378 * 59.99759 * 24 23 22 43 43 H 1.09008 * 109.47160 * 60.00235 * 25 24 23 44 44 H 1.08997 * 109.47468 * 180.02562 * 25 24 23 45 45 H 1.09000 * 109.47502 * 299.99938 * 25 24 23 46 46 H 1.08006 * 119.94787 * 179.72590 * 26 22 21 47 47 H 1.08003 * 120.04356 * 180.28059 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1910 1.4422 1.1864 6 1 5.1273 0.9103 1.2690 7 6 3.6815 2.1263 2.2833 8 7 2.8294 3.1108 2.1060 9 14 4.2080 1.6465 4.0102 10 1 5.6789 1.8036 4.1410 11 1 3.5265 2.5225 4.9968 12 1 3.8367 0.2316 4.2657 13 6 4.1784 1.4426 -1.1680 14 8 3.5749 1.5322 -2.2163 15 6 5.6813 1.3315 -1.1710 16 7 6.1695 1.3478 -2.5522 17 6 7.4911 1.2600 -2.8009 18 8 8.2783 1.1668 -1.8790 19 6 7.9830 1.2769 -4.1925 20 6 9.3529 1.1854 -4.4525 21 6 9.8078 1.2021 -5.7521 22 6 8.9064 1.3104 -6.8046 23 8 9.3586 1.3270 -8.0839 24 6 8.3782 1.4409 -9.1172 25 6 9.0721 1.4435 -10.4808 26 6 7.5434 1.4074 -6.5499 27 6 7.0800 1.3852 -5.2534 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9564 -0.8899 35 1 2.5296 3.6355 2.8648 36 1 5.9776 0.3984 -0.6920 37 1 6.1088 2.1721 -0.6246 38 1 5.5414 1.4226 -3.2878 39 1 10.0540 1.1017 -3.6352 40 1 10.8665 1.1319 -5.9538 41 1 7.6908 0.5969 -9.0606 42 1 7.8232 2.3705 -8.9907 43 1 9.6274 0.5140 -10.6076 44 1 8.3243 1.5308 -11.2689 45 1 9.7592 2.2878 -10.5373 46 1 6.8465 1.4958 -7.3703 47 1 6.0204 1.4561 -5.0566 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122919628.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:06 Heat of formation + Delta-G solvation = -106.499263 kcal Electronic energy + Delta-G solvation = -27984.594553 eV Core-core repulsion = 23938.948575 eV Total energy + Delta-G solvation = -4045.645978 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.57729 -40.87381 -40.14410 -38.16588 -37.22111 -35.52468 -34.52298 -33.31984 -32.99060 -32.01090 -31.12947 -29.01909 -27.44530 -26.09289 -24.97606 -24.35826 -22.76700 -22.34100 -21.49177 -21.15140 -19.80250 -19.17597 -18.37791 -17.59809 -17.28937 -17.10039 -16.87995 -16.55050 -16.23476 -16.20573 -15.71055 -15.57369 -15.42139 -15.08799 -14.66386 -14.43288 -14.38715 -14.22582 -14.04207 -13.72726 -13.54496 -13.29776 -13.20199 -13.18532 -12.96637 -12.85721 -12.64720 -12.59864 -12.39396 -12.10945 -12.01567 -11.79082 -11.66791 -11.53511 -11.16692 -11.07798 -10.51967 -10.25979 -10.15088 -9.52846 -9.31265 -8.36123 -6.09610 -0.17415 0.27420 1.40110 1.48434 1.56553 1.76653 1.87757 1.98548 2.14777 2.31458 2.79002 2.92958 3.01125 3.66336 3.70329 3.82194 4.05807 4.07673 4.11123 4.19065 4.21970 4.31827 4.35517 4.39829 4.44894 4.50969 4.55033 4.57885 4.78930 4.85092 4.91323 4.96037 4.96435 5.06116 5.08771 5.15654 5.21428 5.22721 5.28171 5.33161 5.36624 5.43504 5.57544 5.59554 5.93887 6.32636 6.34655 6.49133 7.03189 7.10908 7.46045 7.87662 8.65586 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017391 B = 0.002308 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.684497 B =12127.713587 C =13372.165962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.124 4.124 3 C 0.110 3.890 4 N -0.438 5.438 5 C -0.369 4.369 6 H 0.098 0.902 7 C 0.011 3.989 8 N -0.884 5.884 9 Si 0.981 3.019 10 H -0.267 1.267 11 H -0.280 1.280 12 H -0.265 1.265 13 C 0.451 3.549 14 O -0.625 6.625 15 C 0.132 3.868 16 N -0.706 5.706 17 C 0.557 3.443 18 O -0.582 6.582 19 C -0.190 4.190 20 C -0.024 4.024 21 C -0.163 4.163 22 C 0.156 3.844 23 O -0.322 6.322 24 C 0.039 3.961 25 C -0.150 4.150 26 C -0.213 4.213 27 C -0.042 4.042 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.043 0.957 32 H 0.055 0.945 33 H 0.095 0.905 34 H 0.040 0.960 35 H 0.276 0.724 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.412 0.588 39 H 0.141 0.859 40 H 0.156 0.844 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.064 0.936 44 H 0.099 0.901 45 H 0.063 0.937 46 H 0.160 0.840 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.038 -4.068 -18.006 19.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.162 4.162 3 C -0.014 4.014 4 N -0.154 5.154 5 C -0.496 4.496 6 H 0.116 0.884 7 C -0.193 4.193 8 N -0.520 5.520 9 Si 0.805 3.195 10 H -0.192 1.192 11 H -0.206 1.206 12 H -0.189 1.189 13 C 0.240 3.760 14 O -0.514 6.514 15 C 0.005 3.995 16 N -0.359 5.359 17 C 0.347 3.653 18 O -0.464 6.464 19 C -0.194 4.194 20 C -0.043 4.043 21 C -0.181 4.181 22 C 0.109 3.891 23 O -0.235 6.235 24 C -0.035 4.035 25 C -0.207 4.207 26 C -0.231 4.231 27 C -0.061 4.061 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.113 0.887 34 H 0.059 0.941 35 H 0.086 0.914 36 H 0.105 0.895 37 H 0.100 0.900 38 H 0.251 0.749 39 H 0.159 0.841 40 H 0.173 0.827 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.083 0.917 44 H 0.118 0.882 45 H 0.082 0.918 46 H 0.178 0.822 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 7.255 -3.986 -17.791 19.623 hybrid contribution -0.416 0.185 0.864 0.977 sum 6.839 -3.801 -16.927 18.648 Atomic orbital electron populations 1.21611 0.93542 1.02395 1.01822 1.21719 0.97306 0.96585 1.00626 1.21544 0.80650 0.96784 1.02373 1.43642 1.05610 1.61541 1.04615 1.19725 1.08421 1.33798 0.87632 0.88427 1.26146 0.96175 0.93329 1.03685 1.69937 1.32478 1.16147 1.33434 0.85170 0.78823 0.78684 0.76869 1.19164 1.20557 1.18949 1.20591 0.89697 0.81437 0.84309 1.90457 1.70489 1.58118 1.32344 1.20643 0.91786 1.03411 0.83707 1.45691 1.07597 1.73778 1.08882 1.18604 0.81488 0.75581 0.89614 1.90729 1.56079 1.52367 1.47187 1.19725 0.95512 1.12732 0.91384 1.21117 0.93829 0.92425 0.96939 1.20559 1.00845 1.07183 0.89552 1.19382 0.92521 0.92550 0.84629 1.86044 1.37920 1.87088 1.12450 1.23187 0.91243 1.02634 0.86415 1.21812 1.02178 1.03308 0.93385 1.21407 0.94766 1.08930 0.98010 1.21301 0.99742 0.93308 0.91736 0.92687 0.90901 0.92645 0.93849 0.92657 0.88700 0.94108 0.91415 0.89491 0.89966 0.74895 0.84125 0.82655 0.90637 0.90716 0.91716 0.88236 0.91768 0.82211 0.84368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.24 9.91 71.98 0.71 -3.53 16 2 C -0.12 -4.89 6.26 30.59 0.19 -4.70 16 3 C 0.11 5.18 5.05 86.38 0.44 5.62 16 4 N -0.44 -21.85 2.54 -635.55 -1.61 -23.47 16 5 C -0.37 -18.46 8.69 84.04 0.73 -17.73 16 6 H 0.10 4.71 7.01 -2.91 -0.02 4.69 16 7 C 0.01 0.55 4.95 84.93 0.42 0.97 16 8 N -0.88 -45.84 11.34 21.66 0.25 -45.60 16 9 Si 0.98 39.04 29.61 68.60 2.03 41.07 16 10 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 11 H -0.28 -10.96 7.11 99.48 0.71 -10.25 16 12 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 13 C 0.45 21.70 7.70 87.66 0.67 22.37 16 14 O -0.63 -31.28 15.22 -3.07 -0.05 -31.33 16 15 C 0.13 5.64 4.76 85.63 0.41 6.04 16 16 N -0.71 -26.46 5.48 -469.95 -2.57 -29.04 16 17 C 0.56 20.38 7.76 86.72 0.67 21.05 16 18 O -0.58 -24.83 16.34 -3.97 -0.06 -24.90 16 19 C -0.19 -5.52 5.88 -20.08 -0.12 -5.64 16 20 C -0.02 -0.62 9.58 22.50 0.22 -0.40 16 21 C -0.16 -3.44 9.97 22.33 0.22 -3.21 16 22 C 0.16 3.15 6.70 22.63 0.15 3.30 16 23 O -0.32 -5.72 10.12 -90.27 -0.91 -6.63 16 24 C 0.04 0.44 5.45 71.98 0.39 0.83 16 25 C -0.15 -1.18 10.28 71.98 0.74 -0.44 16 26 C -0.21 -4.12 9.01 22.32 0.20 -3.92 16 27 C -0.04 -1.01 9.53 22.50 0.21 -0.79 16 28 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 29 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.05 1.69 8.14 -2.39 -0.02 1.68 16 31 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 32 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.10 4.78 5.36 -2.39 -0.01 4.77 16 34 H 0.04 2.00 7.36 -2.39 -0.02 1.99 16 35 H 0.28 13.46 8.32 -92.71 -0.77 12.69 16 36 H 0.09 3.67 7.78 -2.39 -0.02 3.65 16 37 H 0.08 3.72 8.04 -2.39 -0.02 3.71 16 38 H 0.41 14.46 5.46 -92.71 -0.51 13.95 16 39 H 0.14 3.59 7.64 -2.91 -0.02 3.57 16 40 H 0.16 2.59 8.06 -2.91 -0.02 2.57 16 41 H 0.08 0.70 7.66 -2.39 -0.02 0.68 16 42 H 0.07 0.70 7.64 -2.39 -0.02 0.69 16 43 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 44 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 45 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 46 H 0.16 2.16 6.28 -2.91 -0.02 2.14 16 47 H 0.14 3.11 6.40 -2.91 -0.02 3.09 16 Total: -1.00 -64.65 391.60 3.81 -60.84 By element: Atomic # 1 Polarization: 38.74 SS G_CDS: 0.48 Total: 39.22 kcal Atomic # 6 Polarization: 13.55 SS G_CDS: 6.27 Total: 19.82 kcal Atomic # 7 Polarization: -94.16 SS G_CDS: -3.94 Total: -98.10 kcal Atomic # 8 Polarization: -61.83 SS G_CDS: -1.03 Total: -62.85 kcal Atomic # 14 Polarization: 39.04 SS G_CDS: 2.03 Total: 41.07 kcal Total: -64.65 3.81 -60.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122919628.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.656 kcal (2) G-P(sol) polarization free energy of solvation -64.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds