Wall clock time and date at job start Tue Mar 31 2020 18:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46820 * 2 1 4 4 N 1.46499 * 109.47036 * 180.02562 * 3 2 1 5 5 C 1.36946 * 119.99937 * 274.34031 * 4 3 2 6 6 H 1.08001 * 119.99549 * 337.80073 * 5 4 3 7 7 C 1.38810 * 120.00009 * 157.80149 * 5 4 3 8 8 N 1.31618 * 120.00064 * 7.73571 * 7 5 4 9 9 Si 1.86807 * 119.99706 * 187.73028 * 7 5 4 10 10 H 1.48498 * 109.46918 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46635 * 120.00528 * 9 7 5 12 12 H 1.48499 * 109.47135 * 240.00117 * 9 7 5 13 13 C 1.46495 * 120.00195 * 94.33748 * 4 3 2 14 14 C 1.50697 * 109.47050 * 269.99835 * 13 4 3 15 15 O 1.21273 * 120.00252 * 0.02562 * 14 13 4 16 16 N 1.34784 * 119.99744 * 179.97438 * 14 13 4 17 17 C 1.46497 * 119.99796 * 180.02562 * 16 14 13 18 18 C 1.52997 * 109.46923 * 180.02562 * 17 16 14 19 19 H 1.08999 * 109.70994 * 305.58797 * 18 17 16 20 20 C 1.53477 * 109.71199 * 185.00323 * 18 17 16 21 21 O 1.43171 * 108.25458 * 180.58069 * 20 18 17 22 22 C 1.36104 * 116.71305 * 46.16685 * 21 20 18 23 23 C 1.38706 * 119.39808 * 162.82105 * 22 21 20 24 24 C 1.38195 * 120.06568 * 179.78684 * 23 22 21 25 25 C 1.38258 * 120.11808 * 0.07792 * 24 23 22 26 26 C 1.38191 * 120.10538 * 0.02562 * 25 24 23 27 27 C 1.38698 * 120.07146 * 359.97438 * 26 25 24 28 28 O 1.36113 * 119.39441 * 179.71617 * 27 26 25 29 29 H 1.08995 * 109.47201 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47381 * 299.99492 * 1 2 3 31 31 H 1.09000 * 109.47720 * 59.99744 * 1 2 3 32 32 H 1.08996 * 109.47253 * 240.00463 * 2 1 3 33 33 H 1.08993 * 109.47237 * 119.99794 * 2 1 3 34 34 H 1.09006 * 109.46729 * 60.00109 * 3 2 1 35 35 H 1.09000 * 109.47183 * 300.00584 * 3 2 1 36 36 H 0.96997 * 119.99823 * 179.97438 * 8 7 5 37 37 H 1.09002 * 109.46866 * 30.00160 * 13 4 3 38 38 H 1.09002 * 109.47198 * 149.99913 * 13 4 3 39 39 H 0.97000 * 119.99724 * 0.02562 * 16 14 13 40 40 H 1.09002 * 109.47475 * 300.00409 * 17 16 14 41 41 H 1.09002 * 109.47081 * 60.00463 * 17 16 14 42 42 H 1.09000 * 109.70447 * 300.26747 * 20 18 17 43 43 H 1.09002 * 109.70840 * 60.88238 * 20 18 17 44 44 H 1.07998 * 119.96937 * 359.85033 * 23 22 21 45 45 H 1.08003 * 119.94204 * 180.02562 * 24 23 22 46 46 H 1.07992 * 119.94568 * 180.02562 * 25 24 23 47 47 H 1.08007 * 119.96545 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1901 1.3527 1.1817 6 1 3.7105 1.6368 2.1067 7 6 5.5011 0.8965 1.1911 8 7 6.1361 0.6954 0.0559 9 14 6.3641 0.5682 2.8151 10 1 5.4391 0.8699 3.9369 11 1 6.7712 -0.8584 2.8796 12 1 7.5677 1.4316 2.9194 13 6 4.2369 1.5388 -1.2659 14 6 4.4879 0.1551 -1.8074 15 8 4.0938 -0.8158 -1.1969 16 7 5.1496 -0.0035 -2.9709 17 6 5.3932 -1.3486 -3.4976 18 6 6.1577 -1.2481 -4.8191 19 1 5.6188 -0.5966 -5.5070 20 6 6.3068 -2.6445 -5.4383 21 8 7.0367 -2.5162 -6.6633 22 6 8.1563 -1.7430 -6.6304 23 6 9.0924 -1.8567 -7.6476 24 6 10.2321 -1.0752 -7.6301 25 6 10.4433 -0.1794 -6.5984 26 6 9.5156 -0.0628 -5.5808 27 6 8.3697 -0.8441 -5.5922 28 8 7.4679 -0.7222 -4.5799 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.6765 1.9564 0.8901 35 1 1.6765 1.9564 -0.8899 36 1 7.0523 0.3770 0.0626 37 1 3.6475 2.1087 -1.9842 38 1 5.1894 2.0413 -1.0974 39 1 5.4645 0.7731 -3.4595 40 1 5.9826 -1.9188 -2.7796 41 1 4.4405 -1.8509 -3.6660 42 1 6.8507 -3.2944 -4.7528 43 1 5.3213 -3.0644 -5.6398 44 1 8.9300 -2.5558 -8.4545 45 1 10.9595 -1.1650 -8.4234 46 1 11.3346 0.4302 -6.5878 47 1 9.6827 0.6380 -4.7762 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123000855.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:33 Heat of formation + Delta-G solvation = -54.875846 kcal Electronic energy + Delta-G solvation = -29341.917675 eV Core-core repulsion = 25298.510256 eV Total energy + Delta-G solvation = -4043.407418 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.35403 -38.46315 -37.76583 -37.30226 -35.68237 -33.91304 -32.82014 -31.32935 -30.73806 -30.47167 -28.93088 -27.34352 -25.53324 -25.43037 -23.41596 -22.74590 -21.89949 -20.78877 -20.10995 -19.28407 -18.77548 -17.59549 -17.16163 -16.73687 -15.78714 -15.51355 -15.15413 -15.11668 -14.98326 -14.49828 -14.33954 -14.17028 -14.01571 -13.89302 -13.67248 -13.34953 -12.94844 -12.83073 -12.63887 -12.19593 -12.05758 -11.84236 -11.82575 -11.43552 -11.29014 -11.09397 -10.97643 -10.93721 -10.72334 -10.53501 -10.50598 -10.22916 -9.97873 -9.80941 -9.53411 -8.76727 -8.72556 -8.22078 -8.15367 -8.01983 -6.75496 -5.75928 -3.15181 1.17666 1.20652 2.90899 3.10061 3.41346 3.49459 3.50598 3.61418 3.86072 4.28947 4.37656 4.56966 4.64061 4.68352 4.75641 4.86990 5.02349 5.14447 5.27297 5.30329 5.37768 5.42791 5.57657 5.66527 5.83398 5.84936 5.89527 6.00736 6.08384 6.10426 6.19418 6.30179 6.33981 6.44857 6.51697 6.56901 6.63598 6.70434 6.84929 6.92841 7.16810 7.34426 7.36077 7.44485 7.52391 7.79319 8.39087 8.69027 9.24073 9.76955 9.91752 10.32918 11.30942 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014019 B = 0.003072 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.768042 B = 9113.142820 C =10429.609723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.141 4.141 3 C 0.151 3.849 4 N -0.579 5.579 5 C -0.240 4.240 6 H 0.074 0.926 7 C 0.007 3.993 8 N -0.908 5.908 9 Si 0.907 3.093 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.293 1.293 13 C 0.166 3.834 14 C 0.532 3.468 15 O -0.539 6.539 16 N -0.746 5.746 17 C 0.140 3.860 18 C 0.044 3.956 19 H 0.089 0.911 20 C 0.029 3.971 21 O -0.308 6.308 22 C 0.045 3.955 23 C -0.116 4.116 24 C -0.123 4.123 25 C -0.117 4.117 26 C -0.114 4.114 27 C 0.059 3.941 28 O -0.291 6.291 29 H 0.040 0.960 30 H 0.044 0.956 31 H 0.042 0.958 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.041 0.959 35 H 0.035 0.965 36 H 0.253 0.747 37 H 0.025 0.975 38 H 0.118 0.882 39 H 0.390 0.610 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.125 0.875 44 H 0.131 0.869 45 H 0.129 0.871 46 H 0.130 0.870 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.070 -2.176 -16.377 16.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.180 4.180 3 C 0.025 3.975 4 N -0.298 5.298 5 C -0.369 4.369 6 H 0.091 0.909 7 C -0.189 4.189 8 N -0.555 5.555 9 Si 0.738 3.262 10 H -0.205 1.205 11 H -0.218 1.218 12 H -0.220 1.220 13 C 0.036 3.964 14 C 0.320 3.680 15 O -0.414 6.414 16 N -0.402 5.402 17 C 0.015 3.985 18 C -0.013 4.013 19 H 0.106 0.894 20 C -0.047 4.047 21 O -0.222 6.222 22 C 0.000 4.000 23 C -0.135 4.135 24 C -0.141 4.141 25 C -0.135 4.135 26 C -0.133 4.133 27 C 0.013 3.987 28 O -0.205 6.205 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.059 0.941 35 H 0.053 0.947 36 H 0.064 0.936 37 H 0.042 0.958 38 H 0.136 0.864 39 H 0.222 0.778 40 H 0.088 0.912 41 H 0.095 0.905 42 H 0.099 0.901 43 H 0.143 0.857 44 H 0.149 0.851 45 H 0.147 0.853 46 H 0.148 0.852 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.841 -2.927 -15.811 16.329 hybrid contribution 0.756 -0.334 0.677 1.068 sum 3.597 -3.261 -15.134 15.894 Atomic orbital electron populations 1.21788 0.98278 1.00149 1.00389 1.22157 0.92319 1.00491 1.03081 1.20917 0.84422 0.93967 0.98203 1.43789 0.99627 1.84051 1.02318 1.19267 0.95231 1.36196 0.86194 0.90859 1.24911 0.97874 0.99254 0.96885 1.69646 1.11460 1.50697 1.23669 0.86132 0.79034 0.77713 0.83291 1.20533 1.21810 1.21981 1.20717 0.98640 0.91114 0.85921 1.22123 0.74577 0.94429 0.76898 1.90482 1.52164 1.42102 1.56609 1.46119 1.62268 1.05840 1.25986 1.20940 0.97741 0.88720 0.91112 1.23486 0.82931 0.95124 0.99802 0.89359 1.23619 0.98444 0.96883 0.85772 1.86288 1.36040 1.65896 1.34012 1.18969 0.89719 0.93840 0.97512 1.20411 0.92685 1.01781 0.98630 1.20879 0.97057 0.96937 0.99250 1.20920 0.99200 0.99406 0.93975 1.20543 0.92890 0.99515 1.00335 1.19045 0.92853 0.96729 0.90061 1.86497 1.20454 1.77195 1.36394 0.94037 0.93656 0.93842 0.91650 0.92326 0.94082 0.94703 0.93591 0.95751 0.86402 0.77786 0.91216 0.90543 0.90112 0.85736 0.85077 0.85309 0.85196 0.84563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 9.91 37.16 0.37 -2.03 16 2 C -0.14 -2.91 5.67 -26.73 -0.15 -3.07 16 3 C 0.15 3.21 5.72 -4.04 -0.02 3.19 16 4 N -0.58 -14.36 2.07 -174.61 -0.36 -14.72 16 5 C -0.24 -6.54 9.70 -15.06 -0.15 -6.69 16 6 H 0.07 1.98 7.84 -52.49 -0.41 1.57 16 7 C 0.01 0.20 5.41 -17.43 -0.09 0.11 16 8 N -0.91 -25.24 8.21 55.49 0.46 -24.78 16 9 Si 0.91 22.40 29.56 -169.99 -5.03 17.38 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 13 C 0.17 3.83 5.47 -5.20 -0.03 3.80 16 14 C 0.53 12.21 5.79 -10.98 -0.06 12.15 16 15 O -0.54 -14.37 13.88 5.56 0.08 -14.29 16 16 N -0.75 -13.75 5.52 -60.30 -0.33 -14.08 16 17 C 0.14 2.23 5.36 -4.05 -0.02 2.21 16 18 C 0.04 0.57 3.06 -26.49 -0.08 0.49 16 19 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 20 C 0.03 0.33 6.56 37.40 0.25 0.57 16 21 O -0.31 -3.95 10.42 -32.85 -0.34 -4.29 16 22 C 0.04 0.58 6.49 -39.14 -0.25 0.33 16 23 C -0.12 -1.27 9.96 -39.42 -0.39 -1.66 16 24 C -0.12 -1.16 10.04 -39.59 -0.40 -1.56 16 25 C -0.12 -1.17 10.04 -39.59 -0.40 -1.56 16 26 C -0.11 -1.41 9.96 -39.43 -0.39 -1.81 16 27 C 0.06 0.82 6.49 -39.14 -0.25 0.57 16 28 O -0.29 -4.49 10.04 -32.88 -0.33 -4.82 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 1.49 6.38 -51.93 -0.33 1.16 16 33 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 34 H 0.04 0.84 8.08 -51.93 -0.42 0.42 16 35 H 0.03 0.66 7.84 -51.93 -0.41 0.26 16 36 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 37 H 0.02 0.49 7.86 -51.93 -0.41 0.08 16 38 H 0.12 2.95 6.24 -51.93 -0.32 2.63 16 39 H 0.39 6.41 8.47 -40.82 -0.35 6.07 16 40 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 41 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 45 H 0.13 0.85 8.06 -52.48 -0.42 0.42 16 46 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 47 H 0.14 1.61 8.06 -52.48 -0.42 1.19 16 LS Contribution 383.20 15.07 5.77 5.77 Total: -1.00 -32.68 383.20 -9.45 -42.13 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -7.28 Total: 6.66 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: -2.08 Total: 5.05 kcal Atomic # 7 Polarization: -53.34 SS G_CDS: -0.24 Total: -53.58 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: -0.60 Total: -23.40 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.03 Total: 17.38 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.68 -9.45 -42.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123000855.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.749 kcal (2) G-P(sol) polarization free energy of solvation -32.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds