Wall clock time and date at job start Tue Mar 31 2020 18:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46820 * 2 1 4 4 N 1.46499 * 109.47036 * 180.02562 * 3 2 1 5 5 C 1.36946 * 119.99937 * 274.34031 * 4 3 2 6 6 H 1.08001 * 119.99549 * 337.80073 * 5 4 3 7 7 C 1.38810 * 120.00009 * 157.80149 * 5 4 3 8 8 N 1.31618 * 120.00064 * 7.73571 * 7 5 4 9 9 Si 1.86807 * 119.99706 * 187.73028 * 7 5 4 10 10 H 1.48498 * 109.46918 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46635 * 120.00528 * 9 7 5 12 12 H 1.48499 * 109.47135 * 240.00117 * 9 7 5 13 13 C 1.46495 * 120.00195 * 94.33748 * 4 3 2 14 14 C 1.50697 * 109.47050 * 269.99835 * 13 4 3 15 15 O 1.21273 * 120.00252 * 0.02562 * 14 13 4 16 16 N 1.34784 * 119.99744 * 179.97438 * 14 13 4 17 17 C 1.46497 * 119.99796 * 180.02562 * 16 14 13 18 18 C 1.52997 * 109.46923 * 180.02562 * 17 16 14 19 19 H 1.08999 * 109.70994 * 305.58797 * 18 17 16 20 20 C 1.53477 * 109.71199 * 185.00323 * 18 17 16 21 21 O 1.43171 * 108.25458 * 180.58069 * 20 18 17 22 22 C 1.36104 * 116.71305 * 46.16685 * 21 20 18 23 23 C 1.38706 * 119.39808 * 162.82105 * 22 21 20 24 24 C 1.38195 * 120.06568 * 179.78684 * 23 22 21 25 25 C 1.38258 * 120.11808 * 0.07792 * 24 23 22 26 26 C 1.38191 * 120.10538 * 0.02562 * 25 24 23 27 27 C 1.38698 * 120.07146 * 359.97438 * 26 25 24 28 28 O 1.36113 * 119.39441 * 179.71617 * 27 26 25 29 29 H 1.08995 * 109.47201 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47381 * 299.99492 * 1 2 3 31 31 H 1.09000 * 109.47720 * 59.99744 * 1 2 3 32 32 H 1.08996 * 109.47253 * 240.00463 * 2 1 3 33 33 H 1.08993 * 109.47237 * 119.99794 * 2 1 3 34 34 H 1.09006 * 109.46729 * 60.00109 * 3 2 1 35 35 H 1.09000 * 109.47183 * 300.00584 * 3 2 1 36 36 H 0.96997 * 119.99823 * 179.97438 * 8 7 5 37 37 H 1.09002 * 109.46866 * 30.00160 * 13 4 3 38 38 H 1.09002 * 109.47198 * 149.99913 * 13 4 3 39 39 H 0.97000 * 119.99724 * 0.02562 * 16 14 13 40 40 H 1.09002 * 109.47475 * 300.00409 * 17 16 14 41 41 H 1.09002 * 109.47081 * 60.00463 * 17 16 14 42 42 H 1.09000 * 109.70447 * 300.26747 * 20 18 17 43 43 H 1.09002 * 109.70840 * 60.88238 * 20 18 17 44 44 H 1.07998 * 119.96937 * 359.85033 * 23 22 21 45 45 H 1.08003 * 119.94204 * 180.02562 * 24 23 22 46 46 H 1.07992 * 119.94568 * 180.02562 * 25 24 23 47 47 H 1.08007 * 119.96545 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1901 1.3527 1.1817 6 1 3.7105 1.6368 2.1067 7 6 5.5011 0.8965 1.1911 8 7 6.1361 0.6954 0.0559 9 14 6.3641 0.5682 2.8151 10 1 5.4391 0.8699 3.9369 11 1 6.7712 -0.8584 2.8796 12 1 7.5677 1.4316 2.9194 13 6 4.2369 1.5388 -1.2659 14 6 4.4879 0.1551 -1.8074 15 8 4.0938 -0.8158 -1.1969 16 7 5.1496 -0.0035 -2.9709 17 6 5.3932 -1.3486 -3.4976 18 6 6.1577 -1.2481 -4.8191 19 1 5.6188 -0.5966 -5.5070 20 6 6.3068 -2.6445 -5.4383 21 8 7.0367 -2.5162 -6.6633 22 6 8.1563 -1.7430 -6.6304 23 6 9.0924 -1.8567 -7.6476 24 6 10.2321 -1.0752 -7.6301 25 6 10.4433 -0.1794 -6.5984 26 6 9.5156 -0.0628 -5.5808 27 6 8.3697 -0.8441 -5.5922 28 8 7.4679 -0.7222 -4.5799 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.6765 1.9564 0.8901 35 1 1.6765 1.9564 -0.8899 36 1 7.0523 0.3770 0.0626 37 1 3.6475 2.1087 -1.9842 38 1 5.1894 2.0413 -1.0974 39 1 5.4645 0.7731 -3.4595 40 1 5.9826 -1.9188 -2.7796 41 1 4.4405 -1.8509 -3.6660 42 1 6.8507 -3.2944 -4.7528 43 1 5.3213 -3.0644 -5.6398 44 1 8.9300 -2.5558 -8.4545 45 1 10.9595 -1.1650 -8.4234 46 1 11.3346 0.4302 -6.5878 47 1 9.6827 0.6380 -4.7762 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123000855.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:32 Heat of formation + Delta-G solvation = -75.222975 kcal Electronic energy + Delta-G solvation = -29342.799992 eV Core-core repulsion = 25298.510256 eV Total energy + Delta-G solvation = -4044.289736 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.31891 -40.12612 -38.77582 -38.32043 -37.42543 -35.43767 -34.60596 -32.64356 -32.27642 -31.60699 -29.98400 -28.90593 -27.25045 -26.75097 -24.57782 -23.78206 -23.48088 -21.86794 -21.73297 -20.95062 -19.80303 -18.88783 -18.52080 -18.03963 -17.29214 -17.10321 -16.67792 -16.16770 -16.00910 -15.89310 -15.82011 -15.47360 -15.40367 -15.12251 -14.82959 -14.69300 -14.60217 -14.39014 -13.90874 -13.60712 -13.52020 -13.19982 -12.93289 -12.82632 -12.76588 -12.73141 -12.50503 -12.21412 -12.16722 -12.07128 -12.01599 -11.83865 -11.74313 -11.47373 -11.22863 -10.72839 -10.15456 -9.66020 -9.63682 -9.08190 -8.70892 -7.84422 -5.23045 0.30898 0.33159 1.41156 1.46011 1.52800 1.94108 2.16299 2.43064 2.49625 2.71560 2.75176 3.27156 3.39168 3.56772 3.63748 3.70887 3.76006 4.12161 4.17527 4.26754 4.32195 4.38690 4.42264 4.45950 4.46871 4.60181 4.64176 4.71124 4.75022 4.83992 4.91955 4.97408 5.03798 5.20519 5.23431 5.24516 5.31404 5.47245 5.50332 5.52208 5.63413 5.72652 5.77887 5.88138 5.96297 6.37691 6.40107 7.00972 7.22604 7.85881 8.09516 8.31046 9.18401 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014019 B = 0.003072 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.768042 B = 9113.142820 C =10429.609723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.130 4.130 3 C 0.148 3.852 4 N -0.595 5.595 5 C -0.247 4.247 6 H 0.070 0.930 7 C -0.041 4.041 8 N -0.917 5.917 9 Si 0.958 3.042 10 H -0.270 1.270 11 H -0.308 1.308 12 H -0.288 1.288 13 C 0.165 3.835 14 C 0.533 3.467 15 O -0.581 6.581 16 N -0.735 5.735 17 C 0.146 3.854 18 C 0.052 3.948 19 H 0.102 0.898 20 C 0.032 3.968 21 O -0.313 6.313 22 C 0.024 3.976 23 C -0.120 4.120 24 C -0.113 4.113 25 C -0.112 4.112 26 C -0.133 4.133 27 C 0.029 3.971 28 O -0.320 6.320 29 H 0.049 0.951 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.041 0.959 33 H 0.020 0.980 34 H 0.046 0.954 35 H 0.061 0.939 36 H 0.242 0.758 37 H 0.058 0.942 38 H 0.095 0.905 39 H 0.400 0.600 40 H 0.037 0.963 41 H 0.092 0.908 42 H 0.074 0.926 43 H 0.155 0.845 44 H 0.151 0.849 45 H 0.166 0.834 46 H 0.159 0.841 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.916 -1.888 -18.443 18.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.170 4.170 3 C 0.023 3.977 4 N -0.315 5.315 5 C -0.377 4.377 6 H 0.088 0.912 7 C -0.235 4.235 8 N -0.565 5.565 9 Si 0.789 3.211 10 H -0.195 1.195 11 H -0.236 1.236 12 H -0.215 1.215 13 C 0.035 3.965 14 C 0.321 3.679 15 O -0.459 6.459 16 N -0.390 5.390 17 C 0.021 3.979 18 C -0.005 4.005 19 H 0.120 0.880 20 C -0.044 4.044 21 O -0.227 6.227 22 C -0.021 4.021 23 C -0.139 4.139 24 C -0.131 4.131 25 C -0.130 4.130 26 C -0.152 4.152 27 C -0.015 4.015 28 O -0.236 6.236 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.060 0.940 33 H 0.039 0.961 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.052 0.948 37 H 0.076 0.924 38 H 0.113 0.887 39 H 0.234 0.766 40 H 0.056 0.944 41 H 0.109 0.891 42 H 0.092 0.908 43 H 0.173 0.827 44 H 0.168 0.832 45 H 0.183 0.817 46 H 0.177 0.823 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 2.687 -2.610 -17.917 18.305 hybrid contribution 0.851 -0.388 1.237 1.551 sum 3.538 -2.999 -16.680 17.313 Atomic orbital electron populations 1.21680 0.94427 1.01353 1.02050 1.21965 0.95586 0.99375 1.00051 1.21085 0.82528 0.94456 0.99673 1.43997 1.01161 1.84256 1.02113 1.19462 0.95443 1.35584 0.87201 0.91170 1.25506 0.98790 1.00011 0.99208 1.69832 1.10779 1.51364 1.24556 0.85322 0.78386 0.76337 0.81072 1.19458 1.23575 1.21509 1.20684 0.98121 0.91472 0.86237 1.22031 0.74525 0.93859 0.77518 1.90461 1.54099 1.43187 1.58177 1.45877 1.60724 1.07493 1.24870 1.20944 0.98408 0.86833 0.91709 1.23386 0.82260 0.96712 0.98098 0.88016 1.23706 0.99757 0.95527 0.85420 1.86275 1.36195 1.65949 1.34305 1.19270 0.90484 0.94187 0.98114 1.20799 0.92536 1.02161 0.98370 1.21338 0.96900 0.95327 0.99512 1.21302 0.99293 0.99382 0.93005 1.20762 0.93317 0.99770 1.01307 1.19336 0.93368 0.98310 0.90529 1.86425 1.21367 1.77960 1.37810 0.93140 0.92348 0.91756 0.93994 0.96063 0.93525 0.92079 0.94840 0.92404 0.88677 0.76564 0.94415 0.89055 0.90768 0.82696 0.83151 0.81672 0.82338 0.85121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.15 9.91 71.98 0.71 -3.44 16 2 C -0.13 -5.36 5.67 30.60 0.17 -5.19 16 3 C 0.15 6.14 5.72 86.38 0.49 6.63 16 4 N -0.60 -29.71 2.07 -706.33 -1.46 -31.17 16 5 C -0.25 -13.68 9.70 84.03 0.81 -12.86 16 6 H 0.07 3.83 7.84 -2.91 -0.02 3.81 16 7 C -0.04 -2.29 5.41 84.86 0.46 -1.84 16 8 N -0.92 -52.59 8.21 21.65 0.18 -52.41 16 9 Si 0.96 47.10 29.56 68.60 2.03 49.13 16 10 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 11 H -0.31 -15.86 7.11 99.48 0.71 -15.15 16 12 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 13 C 0.16 7.64 5.47 85.63 0.47 8.11 16 14 C 0.53 24.92 5.79 87.65 0.51 25.43 16 15 O -0.58 -31.91 13.88 -3.01 -0.04 -31.95 16 16 N -0.73 -27.54 5.52 -463.07 -2.56 -30.10 16 17 C 0.15 4.75 5.36 86.38 0.46 5.21 16 18 C 0.05 1.37 3.06 30.75 0.09 1.47 16 19 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 20 C 0.03 0.70 6.56 72.14 0.47 1.17 16 21 O -0.31 -7.73 10.42 -82.51 -0.86 -8.59 16 22 C 0.02 0.62 6.49 22.56 0.15 0.76 16 23 C -0.12 -2.36 9.96 22.37 0.22 -2.14 16 24 C -0.11 -1.78 10.04 22.26 0.22 -1.56 16 25 C -0.11 -2.00 10.04 22.26 0.22 -1.77 16 26 C -0.13 -3.28 9.96 22.37 0.22 -3.05 16 27 C 0.03 0.83 6.49 22.56 0.15 0.98 16 28 O -0.32 -10.21 10.04 -82.62 -0.83 -11.04 16 29 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 31 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.04 1.92 6.38 -2.39 -0.02 1.90 16 33 H 0.02 0.99 8.14 -2.39 -0.02 0.98 16 34 H 0.05 1.86 8.08 -2.38 -0.02 1.84 16 35 H 0.06 2.20 7.84 -2.39 -0.02 2.18 16 36 H 0.24 14.04 8.31 -92.71 -0.77 13.27 16 37 H 0.06 2.25 7.86 -2.39 -0.02 2.23 16 38 H 0.10 4.87 6.24 -2.39 -0.01 4.85 16 39 H 0.40 13.29 8.47 -92.71 -0.79 12.51 16 40 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 42 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.16 2.39 8.14 -2.39 -0.02 2.37 16 44 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 45 H 0.17 1.39 8.06 -2.91 -0.02 1.37 16 46 H 0.16 1.85 8.06 -2.91 -0.02 1.82 16 47 H 0.13 3.22 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -73.41 383.20 2.49 -70.92 By element: Atomic # 1 Polarization: 27.09 SS G_CDS: 0.19 Total: 27.28 kcal Atomic # 6 Polarization: 12.08 SS G_CDS: 5.85 Total: 17.93 kcal Atomic # 7 Polarization: -109.84 SS G_CDS: -3.84 Total: -113.68 kcal Atomic # 8 Polarization: -49.85 SS G_CDS: -1.73 Total: -51.58 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.13 kcal Total: -73.41 2.49 -70.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123000855.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.298 kcal (2) G-P(sol) polarization free energy of solvation -73.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds