Wall clock time and date at job start Tue Mar 31 2020 18:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47074 * 2 1 4 4 N 1.46496 * 109.47218 * 180.02562 * 3 2 1 5 5 C 1.36945 * 120.00011 * 272.14150 * 4 3 2 6 6 H 1.08006 * 119.99280 * 8.56079 * 5 4 3 7 7 C 1.38808 * 120.00431 * 188.56895 * 5 4 3 8 8 N 1.31624 * 119.99642 * 24.79129 * 7 5 4 9 9 Si 1.86797 * 120.00213 * 204.79333 * 7 5 4 10 10 H 1.48502 * 109.46861 * 89.99952 * 9 7 5 11 11 H 1.48501 * 109.47136 * 209.99813 * 9 7 5 12 12 H 1.48497 * 109.46779 * 330.00155 * 9 7 5 13 13 C 1.46496 * 120.00452 * 92.14211 * 4 3 2 14 14 C 1.50700 * 109.47569 * 90.00006 * 13 4 3 15 15 O 1.21289 * 119.99366 * 359.97438 * 14 13 4 16 16 N 1.34770 * 120.00329 * 180.02562 * 14 13 4 17 17 C 1.46499 * 120.00147 * 179.97438 * 16 14 13 18 18 C 1.52997 * 109.47585 * 180.02562 * 17 16 14 19 19 H 1.08998 * 109.70435 * 59.99847 * 18 17 16 20 20 C 1.53464 * 109.70953 * 180.58402 * 18 17 16 21 21 O 1.43176 * 108.23789 * 179.38287 * 20 18 17 22 22 C 1.36109 * 116.72531 * 313.82312 * 21 20 18 23 23 C 1.38707 * 119.38747 * 197.14953 * 22 21 20 24 24 C 1.38190 * 120.06275 * 180.18276 * 23 22 21 25 25 C 1.38255 * 120.11343 * 359.97438 * 24 23 22 26 26 C 1.38194 * 120.11504 * 359.95228 * 25 24 23 27 27 C 1.38702 * 120.06658 * 0.02562 * 26 25 24 28 28 O 1.36105 * 119.40003 * 180.15545 * 27 26 25 29 29 H 1.08996 * 109.46949 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46961 * 299.99665 * 1 2 3 31 31 H 1.08996 * 109.47487 * 60.00167 * 1 2 3 32 32 H 1.09003 * 109.46961 * 240.00335 * 2 1 3 33 33 H 1.08996 * 109.47487 * 119.99833 * 2 1 3 34 34 H 1.09005 * 109.47006 * 300.00243 * 3 2 1 35 35 H 1.09002 * 109.47333 * 59.99953 * 3 2 1 36 36 H 0.97002 * 119.99659 * 180.02562 * 8 7 5 37 37 H 1.09003 * 109.47289 * 209.99968 * 13 4 3 38 38 H 1.08997 * 109.47176 * 330.00016 * 13 4 3 39 39 H 0.96994 * 120.00304 * 0.02562 * 16 14 13 40 40 H 1.09003 * 109.47154 * 300.00327 * 17 16 14 41 41 H 1.09008 * 109.47363 * 60.00043 * 17 16 14 42 42 H 1.09002 * 109.71083 * 299.12053 * 20 18 17 43 43 H 1.08993 * 109.71446 * 59.75448 * 20 18 17 44 44 H 1.07994 * 119.96376 * 0.15784 * 23 22 21 45 45 H 1.08000 * 119.94495 * 179.97438 * 24 23 22 46 46 H 1.08001 * 119.94256 * 179.97438 * 25 24 23 47 47 H 1.08002 * 119.97005 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1901 1.3981 1.1842 6 1 3.6594 1.2240 2.1087 7 6 5.5666 1.5769 1.1972 8 7 6.1521 2.2484 0.2283 9 14 6.5880 0.8644 2.5895 10 1 7.0195 -0.5111 2.2331 11 1 7.7838 1.7163 2.8123 12 1 5.7725 0.8217 3.8298 13 6 4.2370 1.4902 -1.2687 14 6 4.4880 2.9263 -1.6503 15 8 4.0937 3.8219 -0.9336 16 7 5.1497 3.2155 -2.7882 17 6 5.3932 4.6116 -3.1594 18 6 6.1567 4.6614 -4.4843 19 1 5.5701 4.1771 -5.2649 20 6 6.4276 6.1216 -4.8710 21 8 7.1542 6.1311 -6.1046 22 6 8.2048 5.2713 -6.2028 23 6 9.1548 5.4679 -7.1941 24 6 10.2251 4.6013 -7.3089 25 6 10.3522 3.5366 -6.4361 26 6 9.4100 3.3359 -5.4454 27 6 8.3336 4.2022 -5.3243 28 8 7.4153 3.9937 -4.3416 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.6765 1.9564 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 7.1140 2.3730 0.2371 37 1 5.1895 0.9719 -1.1581 38 1 3.6476 1.0052 -2.0468 39 1 5.4640 2.4993 -3.3618 40 1 4.4406 5.1297 -3.2698 41 1 5.9827 5.0969 -2.3815 42 1 5.4825 6.6501 -4.9960 43 1 7.0192 6.6042 -4.0932 44 1 9.0578 6.2988 -7.8771 45 1 10.9635 4.7560 -8.0817 46 1 11.1895 2.8608 -6.5286 47 1 9.5118 2.5037 -4.7646 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123001102.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:36 Heat of formation + Delta-G solvation = -55.314700 kcal Electronic energy + Delta-G solvation = -29045.123428 eV Core-core repulsion = 25001.696980 eV Total energy + Delta-G solvation = -4043.426449 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.35664 -38.46983 -37.76351 -37.30281 -35.79729 -33.98739 -32.89686 -31.35147 -30.73932 -30.51468 -28.94681 -27.38891 -25.59326 -25.44825 -23.41979 -22.75124 -21.99301 -20.77787 -20.30157 -19.31778 -18.75000 -17.60964 -17.20119 -16.69295 -15.75454 -15.51603 -15.20193 -15.10144 -14.98564 -14.51627 -14.38273 -14.25332 -14.03052 -13.90399 -13.75444 -13.43096 -13.03573 -12.84123 -12.66801 -12.29647 -12.04911 -11.94730 -11.83794 -11.48073 -11.31172 -11.28421 -10.98314 -10.96522 -10.71146 -10.65483 -10.51741 -10.29217 -10.07535 -9.77128 -9.75819 -8.77296 -8.73561 -8.22833 -8.15396 -8.06057 -6.87415 -5.76982 -3.02457 1.17523 1.20583 2.89794 3.09758 3.42543 3.50024 3.51444 3.61253 3.85271 4.26227 4.36974 4.55502 4.63764 4.68221 4.74873 4.86869 5.02206 5.14367 5.27026 5.30224 5.33721 5.38186 5.48439 5.64324 5.66197 5.74458 5.83619 6.00745 6.02925 6.08549 6.09830 6.23990 6.33777 6.35318 6.42026 6.50450 6.51517 6.58974 6.78421 6.84446 6.92724 7.11199 7.23244 7.34247 7.42683 7.82296 8.29455 8.65361 9.20328 9.73134 9.91536 10.31485 11.33018 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013702 B = 0.002902 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.036664 B = 9646.820341 C =10777.893295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.142 4.142 3 C 0.153 3.847 4 N -0.575 5.575 5 C -0.244 4.244 6 H 0.077 0.923 7 C -0.002 4.002 8 N -0.897 5.897 9 Si 0.900 3.100 10 H -0.289 1.289 11 H -0.295 1.295 12 H -0.282 1.282 13 C 0.165 3.835 14 C 0.531 3.469 15 O -0.534 6.534 16 N -0.745 5.745 17 C 0.140 3.860 18 C 0.043 3.957 19 H 0.088 0.912 20 C 0.029 3.971 21 O -0.308 6.308 22 C 0.045 3.955 23 C -0.116 4.116 24 C -0.123 4.123 25 C -0.117 4.117 26 C -0.114 4.114 27 C 0.059 3.941 28 O -0.291 6.291 29 H 0.044 0.956 30 H 0.049 0.951 31 H 0.046 0.954 32 H 0.051 0.949 33 H 0.060 0.940 34 H 0.034 0.966 35 H 0.044 0.956 36 H 0.253 0.747 37 H 0.103 0.897 38 H 0.035 0.965 39 H 0.390 0.610 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.125 0.875 43 H 0.081 0.919 44 H 0.131 0.869 45 H 0.129 0.871 46 H 0.130 0.870 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.722 2.962 -16.409 16.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.182 4.182 3 C 0.026 3.974 4 N -0.294 5.294 5 C -0.373 4.373 6 H 0.095 0.905 7 C -0.199 4.199 8 N -0.543 5.543 9 Si 0.731 3.269 10 H -0.217 1.217 11 H -0.222 1.222 12 H -0.207 1.207 13 C 0.034 3.966 14 C 0.318 3.682 15 O -0.407 6.407 16 N -0.402 5.402 17 C 0.014 3.986 18 C -0.014 4.014 19 H 0.106 0.894 20 C -0.047 4.047 21 O -0.222 6.222 22 C 0.000 4.000 23 C -0.135 4.135 24 C -0.141 4.141 25 C -0.135 4.135 26 C -0.133 4.133 27 C 0.013 3.987 28 O -0.205 6.205 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.053 0.947 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.121 0.879 38 H 0.053 0.947 39 H 0.222 0.778 40 H 0.095 0.905 41 H 0.089 0.911 42 H 0.143 0.857 43 H 0.100 0.900 44 H 0.149 0.851 45 H 0.147 0.853 46 H 0.148 0.852 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.497 3.687 -15.762 16.379 hybrid contribution 0.885 -0.377 0.557 1.112 sum 3.382 3.310 -15.204 15.923 Atomic orbital electron populations 1.21722 0.97280 1.00419 1.01077 1.22119 0.93712 1.00718 1.01685 1.20764 0.84364 0.93078 0.99180 1.43906 0.99693 1.83725 1.02074 1.19242 0.89680 1.41962 0.86396 0.90524 1.24675 0.97304 0.99757 0.98183 1.69896 1.09491 1.40006 1.34861 0.86288 0.79925 0.78856 0.81834 1.21685 1.22150 1.20728 1.20675 0.98112 0.91094 0.86677 1.22155 0.74733 0.93976 0.77332 1.90503 1.51839 1.49008 1.49386 1.46117 1.62123 1.05413 1.26518 1.20973 0.97858 0.87541 0.92190 1.23488 0.84115 0.93002 1.00754 0.89403 1.23618 0.98321 0.96824 0.85944 1.86287 1.41412 1.57712 1.36838 1.18968 0.91150 0.90920 0.98987 1.20409 0.92977 1.01293 0.98811 1.20875 0.97782 0.95328 1.00132 1.20920 0.99004 0.98480 0.95096 1.20538 0.93704 0.99167 0.99890 1.19039 0.93019 0.94836 0.91767 1.86477 1.23338 1.67923 1.42801 0.93718 0.93215 0.93442 0.93013 0.92080 0.94729 0.93714 0.93686 0.87924 0.94677 0.77763 0.90512 0.91077 0.85703 0.90050 0.85073 0.85310 0.85203 0.84583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.91 37.16 0.37 -1.72 16 2 C -0.14 -2.51 6.25 -26.73 -0.17 -2.67 16 3 C 0.15 3.22 5.67 -4.04 -0.02 3.20 16 4 N -0.58 -14.28 2.02 -174.61 -0.35 -14.63 16 5 C -0.24 -6.69 9.70 -15.06 -0.15 -6.84 16 6 H 0.08 2.09 7.94 -52.48 -0.42 1.68 16 7 C 0.00 -0.05 4.90 -17.43 -0.09 -0.14 16 8 N -0.90 -25.40 8.96 55.49 0.50 -24.90 16 9 Si 0.90 22.00 29.62 -169.99 -5.04 16.97 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 C 0.17 3.80 5.42 -5.20 -0.03 3.77 16 14 C 0.53 12.38 5.89 -10.99 -0.06 12.31 16 15 O -0.53 -14.75 16.16 5.55 0.09 -14.67 16 16 N -0.75 -13.81 5.46 -60.29 -0.33 -14.14 16 17 C 0.14 2.23 5.39 -4.04 -0.02 2.20 16 18 C 0.04 0.57 3.10 -26.49 -0.08 0.49 16 19 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 20 C 0.03 0.33 6.56 37.40 0.25 0.57 16 21 O -0.31 -3.94 10.42 -32.87 -0.34 -4.28 16 22 C 0.04 0.58 6.49 -39.14 -0.25 0.33 16 23 C -0.12 -1.26 9.96 -39.43 -0.39 -1.66 16 24 C -0.12 -1.16 10.04 -39.59 -0.40 -1.55 16 25 C -0.12 -1.16 10.04 -39.59 -0.40 -1.56 16 26 C -0.11 -1.41 9.96 -39.43 -0.39 -1.80 16 27 C 0.06 0.82 6.49 -39.14 -0.25 0.57 16 28 O -0.29 -4.46 9.85 -32.86 -0.32 -4.78 16 29 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.03 0.70 8.06 -51.93 -0.42 0.29 16 35 H 0.04 0.98 8.06 -51.93 -0.42 0.56 16 36 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 37 H 0.10 2.55 6.30 -51.93 -0.33 2.22 16 38 H 0.04 0.69 8.07 -51.93 -0.42 0.27 16 39 H 0.39 6.41 8.37 -40.82 -0.34 6.07 16 40 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 41 H 0.07 1.32 8.14 -51.92 -0.42 0.90 16 42 H 0.13 1.06 8.14 -51.93 -0.42 0.63 16 43 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 44 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 45 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 46 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 47 H 0.14 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 388.36 15.07 5.85 5.85 Total: -1.00 -33.69 388.36 -9.43 -43.12 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -7.40 Total: 5.95 kcal Atomic # 6 Polarization: 7.60 SS G_CDS: -2.09 Total: 5.51 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: -0.18 Total: -53.68 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -0.58 Total: -23.72 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.04 Total: 16.97 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.69 -9.43 -43.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123001102.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.195 kcal (2) G-P(sol) polarization free energy of solvation -33.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds