Wall clock time and date at job start Tue Mar 31 2020 18:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47074 * 2 1 4 4 N 1.46496 * 109.47218 * 180.02562 * 3 2 1 5 5 C 1.36945 * 120.00011 * 272.14150 * 4 3 2 6 6 H 1.08006 * 119.99280 * 8.56079 * 5 4 3 7 7 C 1.38808 * 120.00431 * 188.56895 * 5 4 3 8 8 N 1.31624 * 119.99642 * 24.79129 * 7 5 4 9 9 Si 1.86797 * 120.00213 * 204.79333 * 7 5 4 10 10 H 1.48502 * 109.46861 * 89.99952 * 9 7 5 11 11 H 1.48501 * 109.47136 * 209.99813 * 9 7 5 12 12 H 1.48497 * 109.46779 * 330.00155 * 9 7 5 13 13 C 1.46496 * 120.00452 * 92.14211 * 4 3 2 14 14 C 1.50700 * 109.47569 * 90.00006 * 13 4 3 15 15 O 1.21289 * 119.99366 * 359.97438 * 14 13 4 16 16 N 1.34770 * 120.00329 * 180.02562 * 14 13 4 17 17 C 1.46499 * 120.00147 * 179.97438 * 16 14 13 18 18 C 1.52997 * 109.47585 * 180.02562 * 17 16 14 19 19 H 1.08998 * 109.70435 * 59.99847 * 18 17 16 20 20 C 1.53464 * 109.70953 * 180.58402 * 18 17 16 21 21 O 1.43176 * 108.23789 * 179.38287 * 20 18 17 22 22 C 1.36109 * 116.72531 * 313.82312 * 21 20 18 23 23 C 1.38707 * 119.38747 * 197.14953 * 22 21 20 24 24 C 1.38190 * 120.06275 * 180.18276 * 23 22 21 25 25 C 1.38255 * 120.11343 * 359.97438 * 24 23 22 26 26 C 1.38194 * 120.11504 * 359.95228 * 25 24 23 27 27 C 1.38702 * 120.06658 * 0.02562 * 26 25 24 28 28 O 1.36105 * 119.40003 * 180.15545 * 27 26 25 29 29 H 1.08996 * 109.46949 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46961 * 299.99665 * 1 2 3 31 31 H 1.08996 * 109.47487 * 60.00167 * 1 2 3 32 32 H 1.09003 * 109.46961 * 240.00335 * 2 1 3 33 33 H 1.08996 * 109.47487 * 119.99833 * 2 1 3 34 34 H 1.09005 * 109.47006 * 300.00243 * 3 2 1 35 35 H 1.09002 * 109.47333 * 59.99953 * 3 2 1 36 36 H 0.97002 * 119.99659 * 180.02562 * 8 7 5 37 37 H 1.09003 * 109.47289 * 209.99968 * 13 4 3 38 38 H 1.08997 * 109.47176 * 330.00016 * 13 4 3 39 39 H 0.96994 * 120.00304 * 0.02562 * 16 14 13 40 40 H 1.09003 * 109.47154 * 300.00327 * 17 16 14 41 41 H 1.09008 * 109.47363 * 60.00043 * 17 16 14 42 42 H 1.09002 * 109.71083 * 299.12053 * 20 18 17 43 43 H 1.08993 * 109.71446 * 59.75448 * 20 18 17 44 44 H 1.07994 * 119.96376 * 0.15784 * 23 22 21 45 45 H 1.08000 * 119.94495 * 179.97438 * 24 23 22 46 46 H 1.08001 * 119.94256 * 179.97438 * 25 24 23 47 47 H 1.08002 * 119.97005 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1901 1.3981 1.1842 6 1 3.6594 1.2240 2.1087 7 6 5.5666 1.5769 1.1972 8 7 6.1521 2.2484 0.2283 9 14 6.5880 0.8644 2.5895 10 1 7.0195 -0.5111 2.2331 11 1 7.7838 1.7163 2.8123 12 1 5.7725 0.8217 3.8298 13 6 4.2370 1.4902 -1.2687 14 6 4.4880 2.9263 -1.6503 15 8 4.0937 3.8219 -0.9336 16 7 5.1497 3.2155 -2.7882 17 6 5.3932 4.6116 -3.1594 18 6 6.1567 4.6614 -4.4843 19 1 5.5701 4.1771 -5.2649 20 6 6.4276 6.1216 -4.8710 21 8 7.1542 6.1311 -6.1046 22 6 8.2048 5.2713 -6.2028 23 6 9.1548 5.4679 -7.1941 24 6 10.2251 4.6013 -7.3089 25 6 10.3522 3.5366 -6.4361 26 6 9.4100 3.3359 -5.4454 27 6 8.3336 4.2022 -5.3243 28 8 7.4153 3.9937 -4.3416 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.6765 1.9564 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 7.1140 2.3730 0.2371 37 1 5.1895 0.9719 -1.1581 38 1 3.6476 1.0052 -2.0468 39 1 5.4640 2.4993 -3.3618 40 1 4.4406 5.1297 -3.2698 41 1 5.9827 5.0969 -2.3815 42 1 5.4825 6.6501 -4.9960 43 1 7.0192 6.6042 -4.0932 44 1 9.0578 6.2988 -7.8771 45 1 10.9635 4.7560 -8.0817 46 1 11.1895 2.8608 -6.5286 47 1 9.5118 2.5037 -4.7646 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123001102.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:35 Heat of formation + Delta-G solvation = -76.539429 kcal Electronic energy + Delta-G solvation = -29046.043802 eV Core-core repulsion = 25001.696980 eV Total energy + Delta-G solvation = -4044.346822 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.31791 -40.15401 -38.77343 -38.31872 -37.52555 -35.50890 -34.61638 -32.65750 -32.30416 -31.60519 -29.99786 -28.94166 -27.28708 -26.76271 -24.57221 -23.78156 -23.51037 -21.91485 -21.77509 -20.99516 -19.78427 -18.89632 -18.52906 -17.98922 -17.36621 -17.06109 -16.68497 -16.17530 -16.00111 -15.95289 -15.82226 -15.48176 -15.44519 -15.15696 -14.83475 -14.74673 -14.64582 -14.41626 -13.85770 -13.75457 -13.50320 -13.28822 -13.04794 -12.81571 -12.73476 -12.58962 -12.55522 -12.18829 -12.14876 -12.03641 -12.01711 -11.96071 -11.75680 -11.47733 -11.35114 -10.69208 -10.23544 -9.71573 -9.63752 -9.07794 -8.83718 -7.86125 -5.12150 0.31166 0.33484 1.46647 1.48213 1.56155 1.92204 2.16672 2.40140 2.49529 2.68078 2.75466 3.26108 3.30327 3.56405 3.62268 3.69504 3.72355 4.12330 4.17921 4.26043 4.27081 4.38982 4.39682 4.43772 4.46440 4.57623 4.63815 4.65227 4.73291 4.79418 4.92096 4.95007 4.98331 5.20695 5.23233 5.23523 5.29237 5.29490 5.45239 5.52467 5.63977 5.68450 5.72849 5.82537 5.94523 6.27304 6.40277 6.96223 7.17476 7.83159 8.03540 8.28885 9.20370 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013702 B = 0.002902 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.036664 B = 9646.820341 C =10777.893295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.130 4.130 3 C 0.151 3.849 4 N -0.592 5.592 5 C -0.253 4.253 6 H 0.070 0.930 7 C -0.050 4.050 8 N -0.914 5.914 9 Si 0.960 3.040 10 H -0.282 1.282 11 H -0.305 1.305 12 H -0.277 1.277 13 C 0.165 3.835 14 C 0.532 3.468 15 O -0.584 6.584 16 N -0.733 5.733 17 C 0.144 3.856 18 C 0.052 3.948 19 H 0.103 0.897 20 C 0.032 3.968 21 O -0.313 6.313 22 C 0.024 3.976 23 C -0.120 4.120 24 C -0.113 4.113 25 C -0.112 4.112 26 C -0.133 4.133 27 C 0.030 3.970 28 O -0.319 6.319 29 H 0.065 0.935 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.045 0.955 34 H 0.040 0.960 35 H 0.028 0.972 36 H 0.243 0.757 37 H 0.082 0.918 38 H 0.070 0.930 39 H 0.401 0.599 40 H 0.092 0.908 41 H 0.040 0.960 42 H 0.156 0.844 43 H 0.074 0.926 44 H 0.151 0.849 45 H 0.165 0.835 46 H 0.159 0.841 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.924 2.469 -18.543 18.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.170 4.170 3 C 0.025 3.975 4 N -0.312 5.312 5 C -0.383 4.383 6 H 0.088 0.912 7 C -0.245 4.245 8 N -0.561 5.561 9 Si 0.790 3.210 10 H -0.209 1.209 11 H -0.233 1.233 12 H -0.202 1.202 13 C 0.034 3.966 14 C 0.320 3.680 15 O -0.462 6.462 16 N -0.387 5.387 17 C 0.019 3.981 18 C -0.004 4.004 19 H 0.121 0.879 20 C -0.044 4.044 21 O -0.227 6.227 22 C -0.021 4.021 23 C -0.139 4.139 24 C -0.131 4.131 25 C -0.130 4.130 26 C -0.151 4.151 27 C -0.015 4.015 28 O -0.235 6.235 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.047 0.953 36 H 0.053 0.947 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.236 0.764 40 H 0.110 0.890 41 H 0.058 0.942 42 H 0.174 0.826 43 H 0.092 0.908 44 H 0.168 0.832 45 H 0.183 0.817 46 H 0.176 0.824 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 2.694 3.167 -17.944 18.420 hybrid contribution 0.863 -0.210 1.142 1.447 sum 3.557 2.956 -16.802 17.427 Atomic orbital electron populations 1.21662 0.94322 1.02045 1.01745 1.21936 0.96175 0.97692 1.01184 1.20916 0.82582 0.95321 0.98649 1.44136 1.01168 1.83996 1.01875 1.19433 0.90169 1.41333 0.87318 0.91195 1.25317 0.98181 1.00398 1.00567 1.70067 1.08706 1.41021 1.36334 0.85362 0.77978 0.78006 0.79678 1.20916 1.23257 1.20230 1.20665 0.97675 0.91125 0.87090 1.22115 0.74559 0.93606 0.77768 1.90471 1.54193 1.50210 1.51326 1.45856 1.60419 1.07162 1.25302 1.21000 0.98598 0.85597 0.92880 1.23390 0.83573 0.94477 0.99009 0.87921 1.23705 0.99468 0.95649 0.85598 1.86275 1.41576 1.57743 1.37135 1.19271 0.91989 0.91041 0.99757 1.20795 0.92686 1.02078 0.98306 1.21332 0.97604 0.94019 1.00137 1.21301 0.98854 0.98937 0.93912 1.20760 0.94226 0.99222 1.00931 1.19329 0.93562 0.96230 0.92383 1.86404 1.24218 1.68762 1.44102 0.91593 0.93112 0.92277 0.92489 0.93581 0.94135 0.95332 0.94747 0.89999 0.91239 0.76442 0.88964 0.94183 0.82632 0.90816 0.83173 0.81702 0.82358 0.85072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.65 9.91 71.98 0.71 -2.93 16 2 C -0.13 -4.43 6.25 30.59 0.19 -4.24 16 3 C 0.15 6.36 5.67 86.38 0.49 6.85 16 4 N -0.59 -29.81 2.02 -706.34 -1.43 -31.24 16 5 C -0.25 -14.15 9.70 84.03 0.82 -13.34 16 6 H 0.07 3.91 7.94 -2.91 -0.02 3.88 16 7 C -0.05 -2.80 4.90 84.86 0.42 -2.38 16 8 N -0.91 -53.34 8.96 21.65 0.19 -53.15 16 9 Si 0.96 46.25 29.62 68.60 2.03 48.28 16 10 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 11 H -0.31 -15.12 7.11 99.48 0.71 -14.41 16 12 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 13 C 0.16 7.66 5.42 85.63 0.46 8.13 16 14 C 0.53 25.30 5.89 87.66 0.52 25.82 16 15 O -0.58 -33.25 16.16 -3.06 -0.05 -33.29 16 16 N -0.73 -27.60 5.46 -463.05 -2.53 -30.12 16 17 C 0.14 4.68 5.39 86.38 0.47 5.15 16 18 C 0.05 1.36 3.10 30.75 0.10 1.46 16 19 H 0.10 2.36 8.14 -2.39 -0.02 2.35 16 20 C 0.03 0.70 6.56 72.14 0.47 1.17 16 21 O -0.31 -7.70 10.42 -82.57 -0.86 -8.56 16 22 C 0.02 0.61 6.49 22.56 0.15 0.76 16 23 C -0.12 -2.35 9.96 22.37 0.22 -2.13 16 24 C -0.11 -1.78 10.04 22.26 0.22 -1.55 16 25 C -0.11 -1.99 10.04 22.26 0.22 -1.76 16 26 C -0.13 -3.24 9.96 22.37 0.22 -3.02 16 27 C 0.03 0.84 6.49 22.56 0.15 0.98 16 28 O -0.32 -10.06 9.85 -82.53 -0.81 -10.88 16 29 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.05 1.69 8.14 -2.39 -0.02 1.68 16 34 H 0.04 1.63 8.06 -2.38 -0.02 1.61 16 35 H 0.03 1.27 8.06 -2.39 -0.02 1.25 16 36 H 0.24 14.19 8.31 -92.71 -0.77 13.42 16 37 H 0.08 4.16 6.30 -2.39 -0.02 4.15 16 38 H 0.07 2.68 8.07 -2.39 -0.02 2.67 16 39 H 0.40 13.31 8.37 -92.71 -0.78 12.53 16 40 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 41 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 42 H 0.16 2.37 8.14 -2.39 -0.02 2.35 16 43 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.15 2.29 8.06 -2.91 -0.02 2.26 16 45 H 0.17 1.39 8.06 -2.91 -0.02 1.37 16 46 H 0.16 1.83 8.06 -2.91 -0.02 1.81 16 47 H 0.13 3.18 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -75.30 388.36 2.56 -72.74 By element: Atomic # 1 Polarization: 27.07 SS G_CDS: 0.19 Total: 27.26 kcal Atomic # 6 Polarization: 13.14 SS G_CDS: 5.83 Total: 18.96 kcal Atomic # 7 Polarization: -110.75 SS G_CDS: -3.76 Total: -114.51 kcal Atomic # 8 Polarization: -51.01 SS G_CDS: -1.72 Total: -52.73 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -75.30 2.56 -72.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123001102.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.801 kcal (2) G-P(sol) polarization free energy of solvation -75.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds