Wall clock time and date at job start Tue Mar 31 2020 18:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47326 * 2 1 4 4 H 1.09001 * 109.47226 * 54.99445 * 3 2 1 5 5 C 1.52995 * 109.47613 * 174.99763 * 3 2 1 6 6 O 1.42903 * 109.47055 * 295.00076 * 3 2 1 7 7 C 1.35954 * 117.00179 * 154.94004 * 6 3 2 8 8 C 1.38744 * 119.97870 * 5.27483 * 7 6 3 9 9 C 1.38064 * 120.01999 * 179.97438 * 8 7 6 10 10 C 1.38921 * 119.97428 * 0.02562 * 9 8 7 11 11 N 1.39868 * 120.01487 * 179.97438 * 10 9 8 12 12 C 1.34783 * 119.99723 * 36.02258 * 11 10 9 13 13 O 1.21385 * 120.00420 * 355.20646 * 12 11 10 14 14 C 1.49342 * 119.99806 * 175.20070 * 12 11 10 15 15 O 1.21364 * 119.99430 * 0.02562 * 14 12 11 16 16 N 1.34774 * 119.99921 * 180.02562 * 14 12 11 17 17 C 1.46494 * 119.99764 * 180.02562 * 16 14 12 18 18 H 1.08993 * 109.47470 * 325.00343 * 17 16 14 19 19 C 1.53001 * 109.47009 * 85.00137 * 17 16 14 20 20 C 1.50700 * 109.47261 * 205.00048 * 17 16 14 21 21 H 1.08004 * 119.99786 * 0.02562 * 20 17 16 22 22 C 1.37876 * 120.00313 * 180.02562 * 20 17 16 23 23 N 1.31513 * 120.00021 * 0.02562 * 22 20 17 24 24 Si 1.86803 * 120.00086 * 179.97438 * 22 20 17 25 25 H 1.48496 * 109.47260 * 270.00177 * 24 22 20 26 26 H 1.48506 * 109.46952 * 30.00100 * 24 22 20 27 27 H 1.48499 * 109.46985 * 150.00160 * 24 22 20 28 28 C 1.38914 * 119.96251 * 0.25333 * 10 9 8 29 29 C 1.38057 * 119.97776 * 359.44976 * 28 10 9 30 30 H 1.08997 * 109.47228 * 300.00317 * 1 2 3 31 31 H 1.09004 * 109.46783 * 60.00492 * 1 2 3 32 32 H 1.09004 * 109.47332 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47228 * 239.99683 * 2 1 3 34 34 H 1.09003 * 109.46598 * 120.00271 * 2 1 3 35 35 H 1.09006 * 109.47141 * 300.00333 * 5 3 2 36 36 H 1.09005 * 109.46617 * 59.99650 * 5 3 2 37 37 H 1.08991 * 109.47641 * 179.97438 * 5 3 2 38 38 H 1.07993 * 119.99229 * 359.97438 * 8 7 6 39 39 H 1.07991 * 120.00929 * 179.97438 * 9 8 7 40 40 H 0.97001 * 120.00363 * 216.01619 * 11 10 9 41 41 H 0.96996 * 119.99847 * 359.97438 * 16 14 12 42 42 H 1.09004 * 109.47354 * 179.97438 * 19 17 16 43 43 H 1.08994 * 109.47230 * 299.99611 * 19 17 16 44 44 H 1.09001 * 109.47539 * 60.00281 * 19 17 16 45 45 H 0.97000 * 120.00193 * 179.97438 * 23 22 20 46 46 H 1.08002 * 120.00763 * 179.75033 * 28 10 9 47 47 H 1.08006 * 119.98568 * 180.27604 * 29 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4443 0.1258 6 8 1.6620 2.0813 -1.2211 7 6 1.5509 3.4362 -1.2002 8 6 1.9063 4.1434 -0.0606 9 6 1.7943 5.5193 -0.0386 10 6 1.3252 6.1955 -1.1579 11 7 1.2109 7.5893 -1.1363 12 6 2.1219 8.3300 -0.4744 13 8 2.9910 7.7854 0.1749 14 6 2.0622 9.8208 -0.5400 15 8 1.1931 10.3652 -1.1889 16 7 2.9735 10.5614 0.1214 17 6 2.9145 12.0237 0.0575 18 1 2.5729 12.3308 -0.9309 19 6 1.9403 12.5417 1.1175 20 6 4.2858 12.5935 0.3145 21 1 5.1181 11.9323 0.5058 22 6 4.4780 13.9588 0.3053 23 7 3.4644 14.7639 0.0729 24 14 6.1777 14.6649 0.6245 25 1 6.3505 14.9003 2.0805 26 1 7.2087 13.7062 0.1522 27 1 6.3249 15.9497 -0.1055 28 6 0.9642 5.4860 -2.2963 29 6 1.0827 4.1107 -2.3185 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 3.8532 0.9570 1.0572 36 1 3.9995 0.9052 -0.7161 37 1 3.9282 2.4719 0.1253 38 1 2.2705 3.6175 0.8095 39 1 2.0705 6.0696 0.8486 40 1 0.4761 8.0229 -1.5978 41 1 3.6678 10.1261 0.6403 42 1 1.8967 13.6298 1.0703 43 1 0.9485 12.1297 0.9317 44 1 2.2819 12.2347 2.1060 45 1 3.5995 15.7244 0.0668 46 1 0.5956 6.0106 -3.1654 47 1 0.8063 3.5593 -3.2052 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123185380.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:21 Heat of formation + Delta-G solvation = -90.439381 kcal Electronic energy + Delta-G solvation = -27863.716989 eV Core-core repulsion = 23818.767420 eV Total energy + Delta-G solvation = -4044.949569 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.93908 -40.15296 -38.59090 -37.49434 -35.35476 -34.78179 -33.88355 -32.42446 -31.34249 -30.24828 -29.34276 -28.80865 -25.37290 -24.92163 -24.16239 -23.52427 -22.38341 -20.96734 -20.73229 -19.62822 -18.73004 -18.49665 -17.38640 -16.53461 -16.08030 -15.71842 -15.64841 -15.35653 -15.07464 -14.98934 -14.50993 -14.26623 -14.10627 -13.82198 -13.67925 -13.46653 -13.30041 -13.22345 -12.73995 -12.67090 -12.49955 -12.20713 -12.12310 -11.82232 -11.51704 -11.48526 -11.24043 -11.13558 -11.09206 -11.00813 -10.85202 -10.76643 -10.39085 -10.28796 -9.96820 -9.23250 -9.15509 -9.03938 -8.64531 -8.15755 -7.85888 -6.18900 -4.28524 1.06652 1.20291 1.88496 2.68365 2.94624 3.22809 3.29708 3.32936 3.52808 3.74930 4.08361 4.25816 4.32472 4.47696 4.58516 4.69472 4.73243 4.87279 5.02494 5.07154 5.11828 5.14289 5.17011 5.20663 5.32114 5.36257 5.49997 5.52909 5.62532 5.74790 5.78826 5.87683 5.88569 6.18023 6.22583 6.27705 6.66032 6.70168 6.82635 7.00034 7.09390 7.20535 7.24365 7.39535 7.60352 7.76283 7.92063 8.03357 8.41858 8.59274 8.83255 9.38536 10.87102 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.024797 B = 0.001961 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.898667 B =14276.572042 C =14886.777830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C 0.080 3.920 4 H 0.074 0.926 5 C -0.183 4.183 6 O -0.309 6.309 7 C 0.117 3.883 8 C -0.192 4.192 9 C -0.078 4.078 10 C 0.108 3.892 11 N -0.649 5.649 12 C 0.508 3.492 13 O -0.509 6.509 14 C 0.495 3.505 15 O -0.536 6.536 16 N -0.668 5.668 17 C 0.261 3.739 18 H 0.055 0.945 19 C -0.148 4.148 20 C -0.536 4.536 21 H 0.064 0.936 22 C 0.067 3.933 23 N -0.883 5.883 24 Si 0.905 3.095 25 H -0.279 1.279 26 H -0.273 1.273 27 H -0.284 1.284 28 C -0.101 4.101 29 C -0.135 4.135 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.132 0.868 39 H 0.142 0.858 40 H 0.422 0.578 41 H 0.402 0.598 42 H 0.095 0.905 43 H 0.016 0.984 44 H 0.030 0.970 45 H 0.266 0.734 46 H 0.135 0.865 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.602 -26.749 -0.605 27.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.156 4.156 3 C 0.024 3.976 4 H 0.092 0.908 5 C -0.240 4.240 6 O -0.223 6.223 7 C 0.071 3.929 8 C -0.211 4.211 9 C -0.098 4.098 10 C 0.014 3.986 11 N -0.297 5.297 12 C 0.291 3.709 13 O -0.383 6.383 14 C 0.273 3.727 15 O -0.414 6.414 16 N -0.316 5.316 17 C 0.160 3.840 18 H 0.072 0.928 19 C -0.207 4.207 20 C -0.575 4.575 21 H 0.083 0.917 22 C -0.136 4.136 23 N -0.520 5.520 24 Si 0.732 3.268 25 H -0.205 1.205 26 H -0.198 1.198 27 H -0.210 1.210 28 C -0.121 4.121 29 C -0.154 4.154 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.149 0.851 39 H 0.160 0.840 40 H 0.260 0.740 41 H 0.237 0.763 42 H 0.113 0.887 43 H 0.035 0.965 44 H 0.049 0.951 45 H 0.076 0.924 46 H 0.153 0.847 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.627 -26.563 -0.761 27.163 hybrid contribution 0.991 0.528 0.413 1.196 sum -4.637 -26.036 -0.348 26.448 Atomic orbital electron populations 1.21766 0.95089 1.01838 1.02465 1.21631 0.96869 0.93925 1.03162 1.22501 0.95089 0.93890 0.86142 0.90803 1.22396 0.95193 1.03463 1.02942 1.86100 1.83992 1.16716 1.35494 1.18971 0.96777 0.82549 0.94607 1.21177 1.06826 0.94572 0.98539 1.21124 0.97597 0.93289 0.97808 1.17684 1.03959 0.82386 0.94547 1.43167 1.28969 1.04337 1.53179 1.20950 0.81111 0.89561 0.79326 1.90715 1.35044 1.73528 1.38990 1.19668 0.84242 0.86352 0.82415 1.90730 1.35811 1.72775 1.42130 1.46498 1.28495 1.10023 1.46616 1.18987 0.96214 0.71542 0.97237 0.92763 1.22099 0.96008 1.04651 0.97937 1.21188 0.93389 0.92106 1.50789 0.91748 1.24880 0.97520 0.96702 0.94516 1.69889 1.30280 1.03847 1.48004 0.86387 0.83547 0.78504 0.78347 1.20457 1.19753 1.21012 1.20769 1.01492 0.93375 0.96446 1.20163 1.04387 0.93101 0.97795 0.92783 0.91897 0.92485 0.90795 0.90108 0.91015 0.91415 0.91517 0.85058 0.84010 0.73988 0.76329 0.88695 0.96457 0.95105 0.92439 0.84715 0.84851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.81 37.16 0.36 -0.57 16 2 C -0.12 -0.70 5.64 -26.73 -0.15 -0.85 16 3 C 0.08 0.60 2.22 -26.74 -0.06 0.54 16 4 H 0.07 0.54 6.29 -51.93 -0.33 0.21 16 5 C -0.18 -1.27 9.17 37.16 0.34 -0.93 16 6 O -0.31 -3.07 9.34 -19.59 -0.18 -3.26 16 7 C 0.12 1.27 6.60 -39.21 -0.26 1.01 16 8 C -0.19 -2.14 8.24 -39.46 -0.33 -2.46 16 9 C -0.08 -1.02 8.69 -39.39 -0.34 -1.36 16 10 C 0.11 1.40 6.28 -83.69 -0.53 0.87 16 11 N -0.65 -8.99 5.32 -10.27 -0.05 -9.05 16 12 C 0.51 8.60 7.73 -11.63 -0.09 8.51 16 13 O -0.51 -9.18 13.96 5.47 0.08 -9.10 16 14 C 0.49 9.85 7.85 -11.64 -0.09 9.76 16 15 O -0.54 -11.73 16.14 5.49 0.09 -11.64 16 16 N -0.67 -14.23 5.06 -55.41 -0.28 -14.51 16 17 C 0.26 6.53 2.56 -69.08 -0.18 6.35 16 18 H 0.05 1.53 7.58 -51.93 -0.39 1.13 16 19 C -0.15 -3.59 9.26 37.16 0.34 -3.24 16 20 C -0.54 -14.09 8.73 -34.44 -0.30 -14.39 16 21 H 0.06 1.64 7.74 -52.48 -0.41 1.23 16 22 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 23 N -0.88 -24.31 11.32 55.43 0.63 -23.68 16 24 Si 0.90 20.50 29.54 -169.99 -5.02 15.47 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 28 C -0.10 -1.08 9.96 -39.40 -0.39 -1.47 16 29 C -0.14 -1.40 9.98 -39.46 -0.39 -1.79 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.46 7.82 -51.93 -0.41 0.05 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.55 6.93 -51.93 -0.36 0.19 16 38 H 0.13 1.23 5.43 -52.49 -0.28 0.94 16 39 H 0.14 2.00 6.29 -52.49 -0.33 1.67 16 40 H 0.42 5.17 8.30 -40.82 -0.34 4.83 16 41 H 0.40 7.99 8.01 -40.82 -0.33 7.66 16 42 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 43 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 46 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 47 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 LS Contribution 390.04 15.07 5.88 5.88 Total: -1.00 -29.87 390.04 -7.87 -37.74 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: -6.85 Total: 10.49 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: -2.15 Total: 1.65 kcal Atomic # 7 Polarization: -47.53 SS G_CDS: 0.29 Total: -47.24 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.02 Total: -24.00 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -29.87 -7.87 -37.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123185380.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.696 kcal (2) G-P(sol) polarization free energy of solvation -29.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds