Wall clock time and date at job start Tue Mar 31 2020 18:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47326 * 2 1 4 4 H 1.09001 * 109.47226 * 54.99445 * 3 2 1 5 5 C 1.52995 * 109.47613 * 174.99763 * 3 2 1 6 6 O 1.42903 * 109.47055 * 295.00076 * 3 2 1 7 7 C 1.35954 * 117.00179 * 154.94004 * 6 3 2 8 8 C 1.38744 * 119.97870 * 5.27483 * 7 6 3 9 9 C 1.38064 * 120.01999 * 179.97438 * 8 7 6 10 10 C 1.38921 * 119.97428 * 0.02562 * 9 8 7 11 11 N 1.39868 * 120.01487 * 179.97438 * 10 9 8 12 12 C 1.34783 * 119.99723 * 36.02258 * 11 10 9 13 13 O 1.21385 * 120.00420 * 355.20646 * 12 11 10 14 14 C 1.49342 * 119.99806 * 175.20070 * 12 11 10 15 15 O 1.21364 * 119.99430 * 0.02562 * 14 12 11 16 16 N 1.34774 * 119.99921 * 180.02562 * 14 12 11 17 17 C 1.46494 * 119.99764 * 180.02562 * 16 14 12 18 18 H 1.08993 * 109.47470 * 325.00343 * 17 16 14 19 19 C 1.53001 * 109.47009 * 85.00137 * 17 16 14 20 20 C 1.50700 * 109.47261 * 205.00048 * 17 16 14 21 21 H 1.08004 * 119.99786 * 0.02562 * 20 17 16 22 22 C 1.37876 * 120.00313 * 180.02562 * 20 17 16 23 23 N 1.31513 * 120.00021 * 0.02562 * 22 20 17 24 24 Si 1.86803 * 120.00086 * 179.97438 * 22 20 17 25 25 H 1.48496 * 109.47260 * 270.00177 * 24 22 20 26 26 H 1.48506 * 109.46952 * 30.00100 * 24 22 20 27 27 H 1.48499 * 109.46985 * 150.00160 * 24 22 20 28 28 C 1.38914 * 119.96251 * 0.25333 * 10 9 8 29 29 C 1.38057 * 119.97776 * 359.44976 * 28 10 9 30 30 H 1.08997 * 109.47228 * 300.00317 * 1 2 3 31 31 H 1.09004 * 109.46783 * 60.00492 * 1 2 3 32 32 H 1.09004 * 109.47332 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47228 * 239.99683 * 2 1 3 34 34 H 1.09003 * 109.46598 * 120.00271 * 2 1 3 35 35 H 1.09006 * 109.47141 * 300.00333 * 5 3 2 36 36 H 1.09005 * 109.46617 * 59.99650 * 5 3 2 37 37 H 1.08991 * 109.47641 * 179.97438 * 5 3 2 38 38 H 1.07993 * 119.99229 * 359.97438 * 8 7 6 39 39 H 1.07991 * 120.00929 * 179.97438 * 9 8 7 40 40 H 0.97001 * 120.00363 * 216.01619 * 11 10 9 41 41 H 0.96996 * 119.99847 * 359.97438 * 16 14 12 42 42 H 1.09004 * 109.47354 * 179.97438 * 19 17 16 43 43 H 1.08994 * 109.47230 * 299.99611 * 19 17 16 44 44 H 1.09001 * 109.47539 * 60.00281 * 19 17 16 45 45 H 0.97000 * 120.00193 * 179.97438 * 23 22 20 46 46 H 1.08002 * 120.00763 * 179.75033 * 28 10 9 47 47 H 1.08006 * 119.98568 * 180.27604 * 29 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4443 0.1258 6 8 1.6620 2.0813 -1.2211 7 6 1.5509 3.4362 -1.2002 8 6 1.9063 4.1434 -0.0606 9 6 1.7943 5.5193 -0.0386 10 6 1.3252 6.1955 -1.1579 11 7 1.2109 7.5893 -1.1363 12 6 2.1219 8.3300 -0.4744 13 8 2.9910 7.7854 0.1749 14 6 2.0622 9.8208 -0.5400 15 8 1.1931 10.3652 -1.1889 16 7 2.9735 10.5614 0.1214 17 6 2.9145 12.0237 0.0575 18 1 2.5729 12.3308 -0.9309 19 6 1.9403 12.5417 1.1175 20 6 4.2858 12.5935 0.3145 21 1 5.1181 11.9323 0.5058 22 6 4.4780 13.9588 0.3053 23 7 3.4644 14.7639 0.0729 24 14 6.1777 14.6649 0.6245 25 1 6.3505 14.9003 2.0805 26 1 7.2087 13.7062 0.1522 27 1 6.3249 15.9497 -0.1055 28 6 0.9642 5.4860 -2.2963 29 6 1.0827 4.1107 -2.3185 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 3.8532 0.9570 1.0572 36 1 3.9995 0.9052 -0.7161 37 1 3.9282 2.4719 0.1253 38 1 2.2705 3.6175 0.8095 39 1 2.0705 6.0696 0.8486 40 1 0.4761 8.0229 -1.5978 41 1 3.6678 10.1261 0.6403 42 1 1.8967 13.6298 1.0703 43 1 0.9485 12.1297 0.9317 44 1 2.2819 12.2347 2.1060 45 1 3.5995 15.7244 0.0668 46 1 0.5956 6.0106 -3.1654 47 1 0.8063 3.5593 -3.2052 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123185380.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:20 Heat of formation + Delta-G solvation = -108.943021 kcal Electronic energy + Delta-G solvation = -27864.519367 eV Core-core repulsion = 23818.767420 eV Total energy + Delta-G solvation = -4045.751947 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.12021 -41.16799 -39.96644 -38.59073 -37.02670 -35.88289 -34.75531 -34.30557 -32.17131 -31.13415 -30.82468 -29.91033 -27.38628 -26.25208 -24.85754 -24.35798 -23.50823 -22.32338 -21.63143 -21.23076 -20.10409 -19.33939 -18.58442 -18.15382 -17.38754 -17.14611 -17.05963 -16.55438 -16.23906 -15.87559 -15.79272 -15.32859 -15.11255 -14.96666 -14.81729 -14.45265 -14.33926 -14.31378 -13.98348 -13.76449 -13.61959 -13.47903 -13.08566 -12.91357 -12.86900 -12.80545 -12.69227 -12.62657 -12.31721 -12.17300 -12.12102 -11.98238 -11.73663 -11.48419 -11.16488 -10.97504 -10.69115 -10.59857 -10.03150 -9.99393 -8.80468 -8.20791 -6.38052 -0.01594 0.31069 0.59555 1.32580 1.45326 1.46532 1.56974 2.12456 2.23921 2.38793 2.73017 2.75730 3.09972 3.46816 3.71132 3.83241 3.86882 3.98829 4.09225 4.18603 4.36323 4.42957 4.45139 4.58173 4.68281 4.69160 4.70287 4.85739 4.87977 4.97346 5.00789 5.02461 5.09841 5.19534 5.22389 5.24401 5.29735 5.31252 5.32245 5.43137 5.43461 5.58766 5.71129 5.77666 6.02176 6.02946 6.45043 6.54722 6.64199 6.78542 7.05852 7.34103 8.85278 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.024797 B = 0.001961 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.898667 B =14276.572042 C =14886.777830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.115 4.115 3 C 0.072 3.928 4 H 0.077 0.923 5 C -0.180 4.180 6 O -0.315 6.315 7 C 0.118 3.882 8 C -0.194 4.194 9 C -0.092 4.092 10 C 0.081 3.919 11 N -0.631 5.631 12 C 0.516 3.484 13 O -0.522 6.522 14 C 0.496 3.504 15 O -0.557 6.557 16 N -0.670 5.670 17 C 0.267 3.733 18 H 0.016 0.984 19 C -0.136 4.136 20 C -0.552 4.552 21 H 0.070 0.930 22 C 0.020 3.980 23 N -0.912 5.912 24 Si 0.972 3.028 25 H -0.271 1.271 26 H -0.268 1.268 27 H -0.283 1.283 28 C -0.090 4.090 29 C -0.137 4.137 30 H 0.053 0.947 31 H 0.047 0.953 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.066 0.934 37 H 0.051 0.949 38 H 0.145 0.855 39 H 0.126 0.874 40 H 0.430 0.570 41 H 0.410 0.590 42 H 0.074 0.926 43 H 0.021 0.979 44 H 0.039 0.961 45 H 0.268 0.732 46 H 0.159 0.841 47 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.069 -28.925 -0.572 29.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.152 4.152 3 C 0.017 3.983 4 H 0.095 0.905 5 C -0.238 4.238 6 O -0.229 6.229 7 C 0.072 3.928 8 C -0.213 4.213 9 C -0.112 4.112 10 C -0.011 4.011 11 N -0.278 5.278 12 C 0.298 3.702 13 O -0.397 6.397 14 C 0.276 3.724 15 O -0.437 6.437 16 N -0.320 5.320 17 C 0.165 3.835 18 H 0.034 0.966 19 C -0.195 4.195 20 C -0.590 4.590 21 H 0.088 0.912 22 C -0.181 4.181 23 N -0.550 5.550 24 Si 0.797 3.203 25 H -0.197 1.197 26 H -0.192 1.192 27 H -0.209 1.209 28 C -0.110 4.110 29 C -0.156 4.156 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.119 0.881 35 H 0.109 0.891 36 H 0.085 0.915 37 H 0.070 0.930 38 H 0.163 0.837 39 H 0.144 0.856 40 H 0.269 0.731 41 H 0.246 0.754 42 H 0.092 0.908 43 H 0.040 0.960 44 H 0.059 0.941 45 H 0.077 0.923 46 H 0.176 0.824 47 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -5.116 -28.793 -0.735 29.253 hybrid contribution 0.751 1.042 0.359 1.334 sum -4.364 -27.750 -0.376 28.094 Atomic orbital electron populations 1.21766 0.95298 1.02373 1.01742 1.21659 0.96637 0.92827 1.04121 1.22756 0.95558 0.94683 0.85332 0.90549 1.22387 0.94680 1.02733 1.03973 1.86110 1.83801 1.16089 1.36911 1.19151 0.95917 0.83141 0.94560 1.21279 1.06728 0.93888 0.99385 1.21094 0.98419 0.94108 0.97553 1.17869 1.06045 0.81523 0.95706 1.42986 1.28061 1.04877 1.51901 1.20199 0.81851 0.87934 0.80182 1.90719 1.35895 1.73162 1.39969 1.20134 0.83187 0.87857 0.81239 1.90711 1.36488 1.73777 1.42746 1.46258 1.29415 1.08822 1.47456 1.18636 0.95971 0.73632 0.95291 0.96642 1.21925 0.96143 1.03197 0.98207 1.21477 0.93998 0.92642 1.50908 0.91223 1.25728 1.01202 0.97050 0.94146 1.70014 1.32240 1.04129 1.48580 0.85340 0.78984 0.77594 0.78402 1.19660 1.19215 1.20863 1.20999 1.00178 0.93565 0.96283 1.20472 1.03693 0.93048 0.98404 0.92766 0.93337 0.91369 0.90832 0.88120 0.89080 0.91512 0.92977 0.83704 0.85573 0.73103 0.75429 0.90761 0.96034 0.94150 0.92298 0.82388 0.82707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.81 71.98 0.71 -0.90 16 2 C -0.12 -1.10 5.64 30.59 0.17 -0.93 16 3 C 0.07 0.96 2.22 30.59 0.07 1.02 16 4 H 0.08 0.98 6.29 -2.39 -0.02 0.96 16 5 C -0.18 -2.20 9.17 71.98 0.66 -1.54 16 6 O -0.31 -5.72 9.34 -93.03 -0.87 -6.59 16 7 C 0.12 2.38 6.60 22.51 0.15 2.53 16 8 C -0.19 -4.13 8.24 22.35 0.18 -3.94 16 9 C -0.09 -2.35 8.69 22.39 0.19 -2.16 16 10 C 0.08 2.03 6.28 38.18 0.24 2.27 16 11 N -0.63 -17.12 5.32 -304.74 -1.62 -18.74 16 12 C 0.52 17.47 7.73 87.23 0.67 18.14 16 13 O -0.52 -18.84 13.96 -3.35 -0.05 -18.88 16 14 C 0.50 19.98 7.85 87.24 0.68 20.66 16 15 O -0.56 -24.81 16.14 -3.29 -0.05 -24.86 16 16 N -0.67 -28.98 5.06 -447.56 -2.27 -31.24 16 17 C 0.27 13.66 2.56 44.25 0.11 13.77 16 18 H 0.02 0.92 7.58 -2.39 -0.02 0.90 16 19 C -0.14 -6.70 9.26 71.98 0.67 -6.03 16 20 C -0.55 -29.23 8.73 25.60 0.22 -29.00 16 21 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 22 C 0.02 1.04 5.30 84.65 0.45 1.49 16 23 N -0.91 -50.92 11.32 21.45 0.24 -50.67 16 24 Si 0.97 41.84 29.54 68.60 2.03 43.87 16 25 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 26 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 27 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 28 C -0.09 -1.76 9.96 22.39 0.22 -1.54 16 29 C -0.14 -2.53 9.98 22.35 0.22 -2.31 16 30 H 0.05 0.55 8.14 -2.39 -0.02 0.54 16 31 H 0.05 0.64 7.82 -2.39 -0.02 0.62 16 32 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 33 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 36 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 37 H 0.05 0.79 6.93 -2.39 -0.02 0.78 16 38 H 0.15 2.56 5.43 -2.91 -0.02 2.55 16 39 H 0.13 3.61 6.29 -2.91 -0.02 3.60 16 40 H 0.43 10.20 8.30 -92.71 -0.77 9.43 16 41 H 0.41 16.40 8.01 -92.71 -0.74 15.65 16 42 H 0.07 3.98 6.07 -2.39 -0.01 3.96 16 43 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.27 14.12 8.31 -92.71 -0.77 13.35 16 46 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16 47 H 0.16 2.18 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -64.19 390.04 2.54 -61.65 By element: Atomic # 1 Polarization: 34.44 SS G_CDS: -0.50 Total: 33.94 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: 5.63 Total: 11.53 kcal Atomic # 7 Polarization: -97.01 SS G_CDS: -3.64 Total: -100.65 kcal Atomic # 8 Polarization: -49.37 SS G_CDS: -0.97 Total: -50.34 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Total: -64.19 2.54 -61.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123185380.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.294 kcal (2) G-P(sol) polarization free energy of solvation -64.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds